Wall clock time and date at job start Tue Mar 31 2020 22:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.60503 * 2 1 4 4 C 1.53366 * 109.75241 * 239.56766 * 2 1 3 5 5 N 1.46959 * 108.63545 * 190.74979 * 4 2 1 6 6 C 1.34781 * 120.59125 * 235.24812 * 5 4 2 7 7 O 1.21588 * 119.99871 * 185.26897 * 6 5 4 8 8 N 1.34777 * 120.00436 * 5.27459 * 6 5 4 9 9 C 1.46496 * 119.99888 * 185.39713 * 8 6 5 10 10 C 1.53008 * 109.46738 * 179.97438 * 9 8 6 11 11 C 1.53001 * 109.46831 * 179.97438 * 10 9 8 12 12 H 1.08994 * 110.85982 * 54.29510 * 11 10 9 13 13 C 1.54480 * 110.96536 * 178.08731 * 11 10 9 14 14 N 1.46770 * 105.47141 * 143.53426 * 13 11 10 15 15 C 1.34420 * 111.30209 * 342.98212 * 14 13 11 16 16 O 1.21274 * 124.94495 * 180.41903 * 15 14 13 17 17 C 1.51349 * 110.12653 * 0.43934 * 15 14 13 18 18 C 1.46964 * 118.81389 * 55.22847 * 5 4 2 19 19 C 1.53813 * 108.57843 * 304.64584 * 18 5 4 20 20 H 1.08997 * 109.76249 * 289.95101 * 19 18 5 21 21 C 1.52994 * 109.69646 * 169.28966 * 19 18 5 22 22 N 1.46960 * 109.60595 * 120.33961 * 2 1 3 23 23 C 1.36937 * 120.59691 * 355.11732 * 22 2 1 24 24 H 1.08002 * 120.00019 * 126.90763 * 23 22 2 25 25 C 1.38817 * 119.99784 * 306.91013 * 23 22 2 26 26 N 1.31618 * 119.99986 * 337.34670 * 25 23 22 27 27 Si 1.86799 * 119.99665 * 157.35335 * 25 23 22 28 28 H 1.48502 * 109.46870 * 179.97438 * 27 25 23 29 29 H 1.48504 * 109.47010 * 299.99530 * 27 25 23 30 30 H 1.48499 * 109.47590 * 59.99706 * 27 25 23 31 31 H 1.09000 * 109.47139 * 307.60526 * 1 2 3 32 32 H 1.09007 * 109.46807 * 67.60505 * 1 2 3 33 33 H 1.08995 * 109.47326 * 187.60105 * 1 2 3 34 34 H 1.08996 * 109.61252 * 310.49857 * 4 2 1 35 35 H 1.09007 * 109.60918 * 71.00691 * 4 2 1 36 36 H 0.97000 * 119.99419 * 5.39331 * 8 6 5 37 37 H 1.09000 * 109.47379 * 299.99234 * 9 8 6 38 38 H 1.09001 * 109.47548 * 59.99907 * 9 8 6 39 39 H 1.09000 * 109.46694 * 299.99818 * 10 9 8 40 40 H 1.09001 * 109.47044 * 59.99762 * 10 9 8 41 41 H 1.09002 * 110.24498 * 262.52703 * 13 11 10 42 42 H 1.09000 * 110.24784 * 24.44905 * 13 11 10 43 43 H 0.96997 * 124.34734 * 162.96131 * 14 13 11 44 44 H 1.09002 * 110.47360 * 257.54508 * 17 15 14 45 45 H 1.09004 * 110.52177 * 134.88530 * 17 15 14 46 46 H 1.08996 * 109.60769 * 64.51542 * 18 5 4 47 47 H 1.09000 * 109.61231 * 184.86132 * 18 5 4 48 48 H 1.09002 * 109.47145 * 304.59349 * 21 19 18 49 49 H 1.08994 * 109.47352 * 64.59131 * 21 19 18 50 50 H 1.09001 * 109.47323 * 184.59674 * 21 19 18 51 51 H 0.96999 * 119.99415 * 175.07016 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8958 1.0268 0.0000 4 6 2.0484 -0.7311 -1.2446 5 7 3.4947 -0.9447 -1.0954 6 6 4.3534 -0.5068 -2.0374 7 8 5.5369 -0.7723 -1.9517 8 7 3.9005 0.2255 -3.0742 9 6 4.8109 0.6012 -4.1587 10 6 4.0502 1.4229 -5.2015 11 6 5.0012 1.8158 -6.3338 12 1 5.4913 0.9365 -6.7517 13 6 4.2564 2.6077 -7.4314 14 7 5.2123 3.6166 -7.9031 15 6 6.2221 3.7781 -7.0308 16 8 7.1439 4.5537 -7.1711 17 6 6.0420 2.8510 -5.8481 18 6 3.9879 -1.6440 0.0994 19 6 3.4701 -0.9080 1.3467 20 1 3.9707 0.0557 1.4404 21 6 3.7389 -1.7535 2.5931 22 7 2.0232 -0.6993 1.1948 23 6 1.1507 -1.1434 2.1523 24 1 1.1773 -2.1753 2.4702 25 6 0.2321 -0.2674 2.7142 26 7 0.4589 1.0289 2.6898 27 14 -1.3257 -0.9284 3.5052 28 1 -2.1339 0.2026 4.0275 29 1 -2.1154 -1.6762 2.4939 30 1 -0.9661 -1.8371 4.6233 31 1 -0.3633 0.6271 0.8141 32 1 -0.3633 0.3916 -0.9502 33 1 -0.3634 -1.0186 0.1359 34 1 1.5445 -1.6929 -1.3403 35 1 1.8575 -0.1256 -2.1306 36 1 2.9717 0.5037 -3.1023 37 1 5.6310 1.1952 -3.7554 38 1 5.2099 -0.2989 -4.6265 39 1 3.2304 0.8285 -5.6048 40 1 3.6509 2.3230 -4.7340 41 1 3.9738 1.9445 -8.2490 42 1 3.3722 3.0898 -7.0145 43 1 5.1264 4.1040 -8.7374 44 1 5.6606 3.4006 -4.9875 45 1 6.9830 2.3591 -5.6014 46 1 3.6221 -2.6708 0.0994 47 1 5.0779 -1.6440 0.0995 48 1 3.2950 -2.7408 2.4651 49 1 4.8143 -1.8548 2.7385 50 1 3.2987 -1.2674 3.4638 51 1 -0.2146 1.6452 3.0176 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926995142.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:35 Heat of formation + Delta-G solvation = -34.623564 kcal Electronic energy + Delta-G solvation = -30334.521774 eV Core-core repulsion = 26269.662355 eV Total energy + Delta-G solvation = -4064.859419 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.69755 -39.94174 -37.65624 -37.11981 -35.26305 -34.16621 -33.23525 -32.44905 -31.23801 -29.19584 -27.94066 -27.57428 -26.06076 -25.56511 -23.88766 -22.90606 -21.18947 -20.85929 -20.40449 -20.06374 -19.12410 -17.84296 -17.73452 -16.66978 -16.16257 -16.06154 -15.54305 -15.28812 -15.05795 -14.64613 -14.51039 -14.35119 -14.03776 -13.84478 -13.73426 -13.65231 -13.38734 -13.00613 -12.74401 -12.49589 -12.44830 -12.07473 -11.69519 -11.58805 -11.55944 -11.35864 -11.29478 -11.23049 -11.04936 -10.76956 -10.55920 -10.49246 -10.39598 -10.17484 -10.08153 -9.96627 -9.83974 -9.57303 -9.53048 -8.98053 -8.31890 -7.93263 -6.47531 -5.79415 -3.62358 2.27665 2.89158 3.03880 3.28116 3.35358 3.37934 3.54743 3.90466 3.97334 4.13669 4.31474 4.38270 4.57063 4.83471 4.85615 5.05401 5.08800 5.11412 5.15800 5.23730 5.30970 5.45288 5.58406 5.65828 5.71806 5.79318 5.82302 5.93899 6.02682 6.11138 6.16596 6.37207 6.39735 6.42660 6.52327 6.56058 6.60316 6.63436 6.65006 6.77940 6.90842 7.10234 7.20567 7.30332 7.42508 7.57895 7.78473 7.89243 8.28795 8.53554 8.92680 9.10947 9.64503 10.42214 11.07694 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.018631 B = 0.002310 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.491153 B =12118.910198 C =12865.433637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.182 3.818 3 H 0.030 0.970 4 C 0.095 3.905 5 N -0.616 5.616 6 C 0.705 3.295 7 O -0.604 6.604 8 N -0.753 5.753 9 C 0.139 3.861 10 C -0.123 4.123 11 C -0.096 4.096 12 H 0.097 0.903 13 C 0.105 3.895 14 N -0.735 5.735 15 C 0.519 3.481 16 O -0.536 6.536 17 C -0.156 4.156 18 C 0.118 3.882 19 C 0.155 3.845 20 H 0.029 0.971 21 C -0.127 4.127 22 N -0.575 5.575 23 C -0.265 4.265 24 H 0.054 0.946 25 C 0.038 3.962 26 N -0.871 5.871 27 Si 0.880 3.120 28 H -0.290 1.290 29 H -0.278 1.278 30 H -0.278 1.278 31 H 0.090 0.910 32 H 0.022 0.978 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.396 0.604 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.409 0.591 44 H 0.109 0.891 45 H 0.106 0.894 46 H 0.059 0.941 47 H 0.080 0.920 48 H 0.050 0.950 49 H 0.037 0.963 50 H 0.069 0.931 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.410 0.335 -18.257 18.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.075 3.925 3 H 0.048 0.952 4 C -0.030 4.030 5 N -0.350 5.350 6 C 0.406 3.594 7 O -0.483 6.483 8 N -0.412 5.412 9 C 0.015 3.985 10 C -0.161 4.161 11 C -0.115 4.115 12 H 0.115 0.885 13 C -0.020 4.020 14 N -0.391 5.391 15 C 0.306 3.694 16 O -0.413 6.413 17 C -0.196 4.196 18 C -0.007 4.007 19 C 0.048 3.952 20 H 0.047 0.953 21 C -0.185 4.185 22 N -0.300 5.300 23 C -0.394 4.394 24 H 0.071 0.929 25 C -0.165 4.165 26 N -0.510 5.510 27 Si 0.708 3.292 28 H -0.216 1.216 29 H -0.204 1.204 30 H -0.204 1.204 31 H 0.109 0.891 32 H 0.041 0.959 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.233 0.767 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.100 0.900 42 H 0.094 0.906 43 H 0.248 0.752 44 H 0.127 0.873 45 H 0.124 0.876 46 H 0.077 0.923 47 H 0.098 0.902 48 H 0.069 0.931 49 H 0.056 0.944 50 H 0.088 0.912 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.722 0.620 -18.010 18.401 hybrid contribution -1.616 0.172 -0.073 1.627 sum 2.106 0.792 -18.083 18.222 Atomic orbital electron populations 1.22033 0.95051 1.02914 1.00333 1.20584 0.93691 0.93477 0.84780 0.95207 1.22498 0.80000 1.00797 0.99670 1.47205 1.06386 1.59846 1.21612 1.15852 0.84919 0.78898 0.79697 1.90858 1.15025 1.64136 1.78314 1.45237 1.14016 1.58621 1.23342 1.21088 0.92420 0.98607 0.86434 1.21804 0.98221 1.01031 0.95029 1.22087 0.95952 0.98218 0.95288 0.88487 1.22154 0.92103 0.90208 0.97526 1.46251 1.25737 1.43092 1.24013 1.21008 0.80987 0.82716 0.84709 1.90767 1.33345 1.39156 1.78003 1.22535 1.02112 0.97214 0.97754 1.22264 0.99177 0.95034 0.84175 1.21001 0.87075 0.95544 0.91565 0.95345 1.21648 0.98360 0.99877 0.98663 1.43952 0.99447 1.67666 1.18909 1.18630 1.12889 0.92302 1.15585 0.92865 1.25500 1.00431 0.95185 0.95338 1.70217 1.32600 1.01488 1.46676 0.86777 0.84268 0.78444 0.79735 1.21578 1.20429 1.20393 0.89112 0.95860 0.92719 0.91728 0.92301 0.76727 0.91534 0.91854 0.90304 0.90458 0.90024 0.90592 0.75241 0.87258 0.87563 0.92298 0.90189 0.93077 0.94381 0.91188 0.93503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 7.83 37.16 0.29 -2.64 16 2 C 0.18 3.74 3.26 -67.49 -0.22 3.52 16 3 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 4 C 0.10 1.58 5.90 -3.60 -0.02 1.56 16 5 N -0.62 -10.95 2.95 -177.95 -0.52 -11.47 16 6 C 0.70 12.23 8.29 -86.91 -0.72 11.51 16 7 O -0.60 -12.38 15.78 5.29 0.08 -12.30 16 8 N -0.75 -9.50 5.45 -65.22 -0.36 -9.86 16 9 C 0.14 1.34 5.56 -4.04 -0.02 1.32 16 10 C -0.12 -0.69 4.68 -26.73 -0.12 -0.81 16 11 C -0.10 -0.48 3.15 -88.99 -0.28 -0.76 16 12 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 13 C 0.10 0.42 7.35 -3.12 -0.02 0.40 16 14 N -0.74 -4.68 6.24 -59.17 -0.37 -5.05 16 15 C 0.52 5.05 8.43 -10.83 -0.09 4.96 16 16 O -0.54 -7.74 18.03 5.56 0.10 -7.64 16 17 C -0.16 -1.12 5.74 -26.71 -0.15 -1.28 16 18 C 0.12 2.21 5.92 -3.37 -0.02 2.19 16 19 C 0.15 3.24 3.67 -67.25 -0.25 2.99 16 20 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 21 C -0.13 -2.44 8.19 37.15 0.30 -2.14 16 22 N -0.58 -13.12 2.75 -156.76 -0.43 -13.55 16 23 C -0.26 -6.53 6.56 -15.06 -0.10 -6.63 16 24 H 0.05 1.34 7.29 -52.49 -0.38 0.96 16 25 C 0.04 0.96 3.17 -17.43 -0.06 0.90 16 26 N -0.87 -23.24 11.80 55.49 0.65 -22.58 16 27 Si 0.88 19.77 29.61 -169.99 -5.03 14.73 16 28 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 29 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 30 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 31 H 0.09 2.10 4.91 -51.93 -0.26 1.85 16 32 H 0.02 0.38 8.14 -51.92 -0.42 -0.04 16 33 H 0.05 1.13 7.55 -51.93 -0.39 0.74 16 34 H 0.06 1.08 8.12 -51.93 -0.42 0.66 16 35 H 0.06 0.78 5.58 -51.93 -0.29 0.49 16 36 H 0.40 4.28 5.97 -40.82 -0.24 4.04 16 37 H 0.07 0.72 7.62 -51.93 -0.40 0.33 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.08 0.43 8.01 -51.93 -0.42 0.01 16 41 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 42 H 0.08 0.26 7.89 -51.93 -0.41 -0.15 16 43 H 0.41 2.08 8.96 -40.82 -0.37 1.71 16 44 H 0.11 0.77 7.81 -51.93 -0.41 0.37 16 45 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 46 H 0.06 1.08 8.12 -51.93 -0.42 0.65 16 47 H 0.08 1.51 7.02 -51.93 -0.36 1.15 16 48 H 0.05 0.95 7.67 -51.93 -0.40 0.55 16 49 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.07 1.49 7.55 -51.93 -0.39 1.10 16 51 H 0.25 6.62 8.32 -40.82 -0.34 6.28 16 LS Contribution 393.29 15.07 5.93 5.93 Total: -1.00 -32.93 393.29 -9.92 -42.86 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -8.49 Total: 3.83 kcal Atomic # 6 Polarization: 16.59 SS G_CDS: -1.48 Total: 15.10 kcal Atomic # 7 Polarization: -61.48 SS G_CDS: -1.02 Total: -62.51 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: 0.18 Total: -19.94 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.03 Total: 14.73 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.93 -9.92 -42.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926995142.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.234 kcal (2) G-P(sol) polarization free energy of solvation -32.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds