Wall clock time and date at job start Tue Mar 31 2020 22:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.60503 * 2 1 4 4 C 1.53366 * 109.75241 * 239.56766 * 2 1 3 5 5 N 1.46959 * 108.63545 * 190.74979 * 4 2 1 6 6 C 1.34781 * 120.59125 * 235.24812 * 5 4 2 7 7 O 1.21588 * 119.99871 * 185.26897 * 6 5 4 8 8 N 1.34777 * 120.00436 * 5.27459 * 6 5 4 9 9 C 1.46496 * 119.99888 * 185.39713 * 8 6 5 10 10 C 1.53008 * 109.46738 * 179.97438 * 9 8 6 11 11 C 1.53001 * 109.46831 * 179.97438 * 10 9 8 12 12 H 1.08994 * 110.85982 * 54.29510 * 11 10 9 13 13 C 1.54480 * 110.96536 * 178.08731 * 11 10 9 14 14 N 1.46770 * 105.47141 * 143.53426 * 13 11 10 15 15 C 1.34420 * 111.30209 * 342.98212 * 14 13 11 16 16 O 1.21274 * 124.94495 * 180.41903 * 15 14 13 17 17 C 1.51349 * 110.12653 * 0.43934 * 15 14 13 18 18 C 1.46964 * 118.81389 * 55.22847 * 5 4 2 19 19 C 1.53813 * 108.57843 * 304.64584 * 18 5 4 20 20 H 1.08997 * 109.76249 * 289.95101 * 19 18 5 21 21 C 1.52994 * 109.69646 * 169.28966 * 19 18 5 22 22 N 1.46960 * 109.60595 * 120.33961 * 2 1 3 23 23 C 1.36937 * 120.59691 * 355.11732 * 22 2 1 24 24 H 1.08002 * 120.00019 * 126.90763 * 23 22 2 25 25 C 1.38817 * 119.99784 * 306.91013 * 23 22 2 26 26 N 1.31618 * 119.99986 * 337.34670 * 25 23 22 27 27 Si 1.86799 * 119.99665 * 157.35335 * 25 23 22 28 28 H 1.48502 * 109.46870 * 179.97438 * 27 25 23 29 29 H 1.48504 * 109.47010 * 299.99530 * 27 25 23 30 30 H 1.48499 * 109.47590 * 59.99706 * 27 25 23 31 31 H 1.09000 * 109.47139 * 307.60526 * 1 2 3 32 32 H 1.09007 * 109.46807 * 67.60505 * 1 2 3 33 33 H 1.08995 * 109.47326 * 187.60105 * 1 2 3 34 34 H 1.08996 * 109.61252 * 310.49857 * 4 2 1 35 35 H 1.09007 * 109.60918 * 71.00691 * 4 2 1 36 36 H 0.97000 * 119.99419 * 5.39331 * 8 6 5 37 37 H 1.09000 * 109.47379 * 299.99234 * 9 8 6 38 38 H 1.09001 * 109.47548 * 59.99907 * 9 8 6 39 39 H 1.09000 * 109.46694 * 299.99818 * 10 9 8 40 40 H 1.09001 * 109.47044 * 59.99762 * 10 9 8 41 41 H 1.09002 * 110.24498 * 262.52703 * 13 11 10 42 42 H 1.09000 * 110.24784 * 24.44905 * 13 11 10 43 43 H 0.96997 * 124.34734 * 162.96131 * 14 13 11 44 44 H 1.09002 * 110.47360 * 257.54508 * 17 15 14 45 45 H 1.09004 * 110.52177 * 134.88530 * 17 15 14 46 46 H 1.08996 * 109.60769 * 64.51542 * 18 5 4 47 47 H 1.09000 * 109.61231 * 184.86132 * 18 5 4 48 48 H 1.09002 * 109.47145 * 304.59349 * 21 19 18 49 49 H 1.08994 * 109.47352 * 64.59131 * 21 19 18 50 50 H 1.09001 * 109.47323 * 184.59674 * 21 19 18 51 51 H 0.96999 * 119.99415 * 175.07016 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8958 1.0268 0.0000 4 6 2.0484 -0.7311 -1.2446 5 7 3.4947 -0.9447 -1.0954 6 6 4.3534 -0.5068 -2.0374 7 8 5.5369 -0.7723 -1.9517 8 7 3.9005 0.2255 -3.0742 9 6 4.8109 0.6012 -4.1587 10 6 4.0502 1.4229 -5.2015 11 6 5.0012 1.8158 -6.3338 12 1 5.4913 0.9365 -6.7517 13 6 4.2564 2.6077 -7.4314 14 7 5.2123 3.6166 -7.9031 15 6 6.2221 3.7781 -7.0308 16 8 7.1439 4.5537 -7.1711 17 6 6.0420 2.8510 -5.8481 18 6 3.9879 -1.6440 0.0994 19 6 3.4701 -0.9080 1.3467 20 1 3.9707 0.0557 1.4404 21 6 3.7389 -1.7535 2.5931 22 7 2.0232 -0.6993 1.1948 23 6 1.1507 -1.1434 2.1523 24 1 1.1773 -2.1753 2.4702 25 6 0.2321 -0.2674 2.7142 26 7 0.4589 1.0289 2.6898 27 14 -1.3257 -0.9284 3.5052 28 1 -2.1339 0.2026 4.0275 29 1 -2.1154 -1.6762 2.4939 30 1 -0.9661 -1.8371 4.6233 31 1 -0.3633 0.6271 0.8141 32 1 -0.3633 0.3916 -0.9502 33 1 -0.3634 -1.0186 0.1359 34 1 1.5445 -1.6929 -1.3403 35 1 1.8575 -0.1256 -2.1306 36 1 2.9717 0.5037 -3.1023 37 1 5.6310 1.1952 -3.7554 38 1 5.2099 -0.2989 -4.6265 39 1 3.2304 0.8285 -5.6048 40 1 3.6509 2.3230 -4.7340 41 1 3.9738 1.9445 -8.2490 42 1 3.3722 3.0898 -7.0145 43 1 5.1264 4.1040 -8.7374 44 1 5.6606 3.4006 -4.9875 45 1 6.9830 2.3591 -5.6014 46 1 3.6221 -2.6708 0.0994 47 1 5.0779 -1.6440 0.0995 48 1 3.2950 -2.7408 2.4651 49 1 4.8143 -1.8548 2.7385 50 1 3.2987 -1.2674 3.4638 51 1 -0.2146 1.6452 3.0176 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926995142.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:34 Heat of formation + Delta-G solvation = -58.515734 kcal Electronic energy + Delta-G solvation = -30335.557816 eV Core-core repulsion = 26269.662355 eV Total energy + Delta-G solvation = -4065.895462 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.44416 -41.17388 -39.10087 -37.97489 -36.24624 -35.76799 -34.64921 -33.41490 -32.99548 -29.98181 -29.41267 -28.42250 -27.46601 -27.11723 -25.37515 -23.79226 -22.03469 -21.89081 -21.46488 -21.42437 -20.53589 -19.15559 -18.36722 -17.86874 -17.42644 -17.24027 -16.78269 -16.57749 -16.23642 -16.01100 -15.59707 -15.48917 -15.39752 -15.22457 -14.76437 -14.57401 -14.49368 -14.08580 -13.79421 -13.63153 -13.36020 -13.25317 -13.19212 -13.09694 -12.88487 -12.64628 -12.43727 -12.33023 -12.26876 -12.21209 -12.10407 -11.85044 -11.77538 -11.68431 -11.62855 -11.49170 -11.07186 -10.92107 -10.22738 -10.07378 -10.04239 -9.43120 -8.36157 -7.65598 -5.56200 1.48841 1.52925 1.54714 1.57321 1.74576 2.19812 2.47515 2.53304 2.97612 3.25254 3.41931 3.48603 3.56549 3.79637 4.08560 4.16648 4.26779 4.29064 4.34924 4.36848 4.54255 4.55857 4.59176 4.62885 4.70853 4.75616 4.77408 4.80054 4.89190 4.90708 4.93660 4.99306 5.04400 5.06052 5.23085 5.23851 5.35768 5.41139 5.46625 5.60705 5.66007 5.67184 5.78516 5.88432 5.95046 6.01447 6.12020 6.60443 7.03992 7.24269 7.27048 7.61637 7.81542 8.55607 9.15173 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.018631 B = 0.002310 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.491153 B =12118.910198 C =12865.433637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.178 3.822 3 H 0.000 1.000 4 C 0.109 3.891 5 N -0.622 5.622 6 C 0.699 3.301 7 O -0.639 6.639 8 N -0.737 5.737 9 C 0.134 3.866 10 C -0.109 4.109 11 C -0.086 4.086 12 H 0.107 0.893 13 C 0.105 3.895 14 N -0.723 5.723 15 C 0.509 3.491 16 O -0.596 6.596 17 C -0.157 4.157 18 C 0.130 3.870 19 C 0.151 3.849 20 H -0.003 1.003 21 C -0.117 4.117 22 N -0.590 5.590 23 C -0.262 4.262 24 H 0.048 0.952 25 C 0.003 3.997 26 N -0.904 5.904 27 Si 0.933 3.067 28 H -0.297 1.297 29 H -0.269 1.269 30 H -0.279 1.279 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.047 0.953 34 H 0.072 0.928 35 H 0.099 0.901 36 H 0.407 0.593 37 H 0.050 0.950 38 H 0.062 0.938 39 H 0.104 0.896 40 H 0.083 0.917 41 H 0.109 0.891 42 H 0.092 0.908 43 H 0.416 0.584 44 H 0.109 0.891 45 H 0.099 0.901 46 H 0.067 0.933 47 H 0.076 0.924 48 H 0.057 0.943 49 H 0.064 0.936 50 H 0.041 0.959 51 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.703 -0.952 -20.595 20.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.072 3.928 3 H 0.018 0.982 4 C -0.016 4.016 5 N -0.357 5.357 6 C 0.401 3.599 7 O -0.522 6.522 8 N -0.395 5.395 9 C 0.011 3.989 10 C -0.147 4.147 11 C -0.105 4.105 12 H 0.125 0.875 13 C -0.019 4.019 14 N -0.377 5.377 15 C 0.297 3.703 16 O -0.477 6.477 17 C -0.197 4.197 18 C 0.005 3.995 19 C 0.044 3.956 20 H 0.015 0.985 21 C -0.175 4.175 22 N -0.315 5.315 23 C -0.392 4.392 24 H 0.066 0.934 25 C -0.197 4.197 26 N -0.546 5.546 27 Si 0.760 3.240 28 H -0.223 1.223 29 H -0.194 1.194 30 H -0.205 1.205 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.090 0.910 35 H 0.117 0.883 36 H 0.246 0.754 37 H 0.068 0.932 38 H 0.081 0.919 39 H 0.122 0.878 40 H 0.101 0.899 41 H 0.127 0.873 42 H 0.110 0.890 43 H 0.255 0.745 44 H 0.128 0.872 45 H 0.118 0.882 46 H 0.086 0.914 47 H 0.094 0.906 48 H 0.076 0.924 49 H 0.082 0.918 50 H 0.060 0.940 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 1.949 -0.687 -20.405 20.510 hybrid contribution -1.046 0.593 0.646 1.365 sum 0.902 -0.094 -19.760 19.780 Atomic orbital electron populations 1.21893 0.94594 1.01884 1.01214 1.20614 0.94149 0.92236 0.85828 0.98216 1.22345 0.79074 1.01216 0.98924 1.47239 1.06978 1.60001 1.21508 1.16073 0.84334 0.79142 0.80391 1.90834 1.16555 1.65516 1.79257 1.45187 1.14966 1.56859 1.22500 1.21300 0.92285 0.98995 0.86361 1.21722 0.98272 1.00862 0.93834 1.22053 0.95191 0.97955 0.95342 0.87526 1.22377 0.91523 0.89903 0.98064 1.46311 1.25025 1.42865 1.23546 1.21452 0.80803 0.82343 0.85749 1.90727 1.35839 1.41734 1.79421 1.22550 1.02822 0.97432 0.96885 1.21983 0.98809 0.95068 0.83632 1.21056 0.86197 0.94684 0.93623 0.98538 1.21536 0.99972 0.99356 0.96679 1.44236 0.99931 1.67667 1.19621 1.18740 1.12856 0.91957 1.15651 0.93420 1.25990 1.02565 0.95169 0.95956 1.70317 1.33206 1.02495 1.48538 0.85944 0.81532 0.77510 0.79028 1.22348 1.19390 1.20519 0.92218 0.92056 0.93419 0.90998 0.88336 0.75398 0.93158 0.91939 0.87781 0.89873 0.87281 0.89000 0.74513 0.87243 0.88244 0.91441 0.90576 0.92438 0.91762 0.93992 0.94022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.35 7.83 71.98 0.56 -4.78 16 2 C 0.18 7.18 3.26 45.03 0.15 7.32 16 3 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 4 C 0.11 3.32 5.90 86.41 0.51 3.83 16 5 N -0.62 -21.16 2.95 -835.16 -2.46 -23.62 16 6 C 0.70 23.15 8.29 179.05 1.48 24.64 16 7 O -0.64 -25.81 15.78 -3.99 -0.06 -25.87 16 8 N -0.74 -16.58 5.45 -478.52 -2.61 -19.19 16 9 C 0.13 2.27 5.56 86.38 0.48 2.75 16 10 C -0.11 -0.80 4.68 30.60 0.14 -0.65 16 11 C -0.09 -0.58 3.15 -9.74 -0.03 -0.61 16 12 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 13 C 0.10 0.43 7.35 86.83 0.64 1.07 16 14 N -0.72 -7.75 6.24 -459.71 -2.87 -10.61 16 15 C 0.51 9.70 8.43 87.92 0.74 10.44 16 16 O -0.60 -17.86 18.03 -3.01 -0.05 -17.91 16 17 C -0.16 -2.10 5.74 30.61 0.18 -1.93 16 18 C 0.13 4.77 5.92 86.57 0.51 5.28 16 19 C 0.15 6.37 3.67 45.17 0.17 6.54 16 20 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 21 C -0.12 -4.51 8.19 71.98 0.59 -3.92 16 22 N -0.59 -26.93 2.75 -649.88 -1.79 -28.72 16 23 C -0.26 -12.95 6.56 84.03 0.55 -12.40 16 24 H 0.05 2.40 7.29 -2.91 -0.02 2.38 16 25 C 0.00 0.14 3.17 84.86 0.27 0.41 16 26 N -0.90 -49.27 11.80 21.65 0.26 -49.02 16 27 Si 0.93 40.70 29.61 68.60 2.03 42.73 16 28 H -0.30 -13.23 7.11 99.48 0.71 -12.52 16 29 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 30 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 31 H 0.06 2.74 4.91 -2.39 -0.01 2.73 16 32 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 33 H 0.05 1.89 7.55 -2.39 -0.02 1.87 16 34 H 0.07 2.16 8.12 -2.39 -0.02 2.14 16 35 H 0.10 2.20 5.58 -2.38 -0.01 2.19 16 36 H 0.41 7.20 5.97 -92.71 -0.55 6.65 16 37 H 0.05 1.04 7.62 -2.39 -0.02 1.02 16 38 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 40 H 0.08 0.58 8.01 -2.39 -0.02 0.57 16 41 H 0.11 -0.03 8.14 -2.39 -0.02 -0.05 16 42 H 0.09 0.18 7.89 -2.39 -0.02 0.17 16 43 H 0.42 3.47 8.96 -92.71 -0.83 2.64 16 44 H 0.11 1.46 7.81 -2.39 -0.02 1.44 16 45 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 46 H 0.07 2.36 8.12 -2.39 -0.02 2.34 16 47 H 0.08 2.85 7.02 -2.39 -0.02 2.84 16 48 H 0.06 2.10 7.67 -2.39 -0.02 2.09 16 49 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 50 H 0.04 1.82 7.55 -2.39 -0.02 1.80 16 51 H 0.25 13.33 8.32 -92.71 -0.77 12.55 16 Total: -1.00 -75.15 393.29 -1.05 -76.20 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -0.44 Total: 18.02 kcal Atomic # 6 Polarization: 31.05 SS G_CDS: 6.94 Total: 37.99 kcal Atomic # 7 Polarization: -121.70 SS G_CDS: -9.47 Total: -131.16 kcal Atomic # 8 Polarization: -43.67 SS G_CDS: -0.12 Total: -43.78 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.73 kcal Total: -75.15 -1.05 -76.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926995142.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.688 kcal (2) G-P(sol) polarization free energy of solvation -75.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds