Wall clock time and date at job start Tue Mar 31 2020 22:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.75220 * 2 1 4 4 C 1.53371 * 109.61402 * 239.57321 * 2 1 3 5 5 N 1.46967 * 108.63348 * 289.67841 * 4 2 1 6 6 C 1.34772 * 120.59005 * 124.74980 * 5 4 2 7 7 O 1.21585 * 120.00550 * 5.10708 * 6 5 4 8 8 N 1.34778 * 120.00018 * 185.10955 * 6 5 4 9 9 C 1.46503 * 120.00353 * 185.05357 * 8 6 5 10 10 C 1.53001 * 109.47130 * 180.02562 * 9 8 6 11 11 C 1.52997 * 109.47099 * 180.02562 * 10 9 8 12 12 H 1.08999 * 110.85730 * 308.78512 * 11 10 9 13 13 C 1.54479 * 110.97010 * 184.99574 * 11 10 9 14 14 N 1.46764 * 105.47559 * 216.46115 * 13 11 10 15 15 C 1.34422 * 111.29806 * 17.02110 * 14 13 11 16 16 O 1.21285 * 124.94238 * 179.55388 * 15 14 13 17 17 C 1.51281 * 110.11618 * 359.58676 * 15 14 13 18 18 C 1.46962 * 118.81429 * 304.77345 * 5 4 2 19 19 C 1.53375 * 108.63204 * 55.22433 * 18 5 4 20 20 H 1.08997 * 109.75547 * 70.40721 * 19 18 5 21 21 C 1.53002 * 109.60874 * 190.83077 * 19 18 5 22 22 N 1.46966 * 109.61063 * 120.42212 * 2 1 3 23 23 C 1.36930 * 120.59918 * 244.79373 * 22 2 1 24 24 H 1.08001 * 120.00184 * 216.20674 * 23 22 2 25 25 C 1.38815 * 119.99736 * 36.21024 * 23 22 2 26 26 N 1.31611 * 120.00117 * 0.69677 * 25 23 22 27 27 Si 1.86805 * 119.99977 * 180.70172 * 25 23 22 28 28 H 1.48499 * 109.47152 * 89.99685 * 27 25 23 29 29 H 1.48496 * 109.46872 * 209.99903 * 27 25 23 30 30 H 1.48503 * 109.46734 * 330.00105 * 27 25 23 31 31 H 1.08997 * 109.47147 * 299.57628 * 1 2 3 32 32 H 1.09003 * 109.46643 * 59.57587 * 1 2 3 33 33 H 1.08990 * 109.46885 * 179.56994 * 1 2 3 34 34 H 1.09002 * 109.61400 * 169.93862 * 4 2 1 35 35 H 1.09003 * 109.60995 * 49.42301 * 4 2 1 36 36 H 0.97008 * 119.99676 * 5.05302 * 8 6 5 37 37 H 1.08998 * 109.46651 * 299.99518 * 9 8 6 38 38 H 1.09000 * 109.46914 * 59.99548 * 9 8 6 39 39 H 1.09006 * 109.46797 * 299.99605 * 10 9 8 40 40 H 1.09000 * 109.47184 * 59.99823 * 10 9 8 41 41 H 1.09000 * 110.24413 * 335.46490 * 13 11 10 42 42 H 1.09005 * 110.24290 * 97.46469 * 13 11 10 43 43 H 0.96998 * 124.35439 * 197.03375 * 14 13 11 44 44 H 1.09000 * 110.48703 * 225.06769 * 17 15 14 45 45 H 1.09007 * 110.48324 * 102.42571 * 17 15 14 46 46 H 1.09001 * 109.60788 * 295.48403 * 18 5 4 47 47 H 1.09002 * 109.60848 * 174.96465 * 18 5 4 48 48 H 1.08999 * 109.47562 * 179.14307 * 21 19 18 49 49 H 1.09000 * 109.47194 * 299.14764 * 21 19 18 50 50 H 1.09006 * 109.47152 * 59.14597 * 21 19 18 51 51 H 0.97003 * 120.00224 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8983 1.0259 0.0000 4 6 2.0448 -0.7317 -1.2457 5 7 1.7607 -2.1661 -1.0988 6 6 1.0600 -2.8266 -2.0417 7 8 0.7367 -2.2597 -3.0676 8 7 0.7175 -4.1156 -1.8475 9 6 0.0534 -4.8662 -2.9162 10 6 -0.2241 -6.2936 -2.4403 11 6 -0.9169 -7.0776 -3.5566 12 1 -1.7795 -6.5307 -3.9372 13 6 -1.3256 -8.4861 -3.0713 14 7 -1.1218 -9.3718 -4.2238 15 6 -0.3348 -8.7959 -5.1489 16 8 -0.0006 -9.3113 -6.1948 17 6 0.0741 -7.4118 -4.6955 18 6 2.2538 -2.8672 0.0949 19 6 1.7390 -2.1355 1.3407 20 1 0.6642 -2.2872 1.4392 21 6 2.4497 -2.6751 2.5835 22 7 2.0232 -0.7010 1.1938 23 6 2.7300 -0.0286 2.1547 24 1 3.5435 -0.5187 2.6689 25 6 2.4008 1.2830 2.4680 26 7 1.4006 1.8758 1.8512 27 14 3.3775 2.2069 3.7650 28 1 4.5164 2.9086 3.1204 29 1 2.4981 3.1999 4.4327 30 1 3.8942 1.2464 4.7728 31 1 -0.3633 0.5072 0.8937 32 1 -0.3633 0.5204 -0.8862 33 1 -0.3633 -1.0276 -0.0077 34 1 3.1199 -0.5797 -1.3412 35 1 1.5384 -0.3472 -2.1312 36 1 0.9106 -4.5463 -1.0000 37 1 -0.8877 -4.3792 -3.1713 38 1 0.6979 -4.8944 -3.7948 39 1 0.7170 -6.7808 -2.1848 40 1 -0.8687 -6.2649 -1.5618 41 1 -0.6927 -8.7970 -2.2401 42 1 -2.3736 -8.4924 -2.7715 43 1 -1.5058 -10.2586 -4.3073 44 1 -0.0282 -6.6971 -5.5122 45 1 1.0976 -7.4201 -4.3205 46 1 3.3439 -2.8671 0.0950 47 1 1.8855 -3.8931 0.0949 48 1 2.0934 -2.1431 3.4656 49 1 2.2375 -3.7389 2.6903 50 1 3.5248 -2.5277 2.4801 51 1 1.1707 2.7925 2.0699 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926995144.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:43 Heat of formation + Delta-G solvation = -35.881523 kcal Electronic energy + Delta-G solvation = -30408.549876 eV Core-core repulsion = 26343.635908 eV Total energy + Delta-G solvation = -4064.913969 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.72370 -39.95235 -37.67225 -37.12368 -35.24703 -34.01619 -32.97422 -32.47587 -31.18559 -29.16788 -27.98209 -27.65058 -26.27963 -25.29784 -23.69990 -23.08597 -21.21592 -20.96530 -20.81440 -20.02369 -18.68437 -17.89551 -17.76263 -16.66170 -16.22231 -15.82999 -15.59425 -15.31452 -15.15332 -14.72438 -14.38721 -14.08629 -13.92242 -13.89848 -13.71346 -13.46410 -13.34027 -13.15282 -12.80130 -12.52587 -12.43887 -11.95626 -11.73373 -11.70008 -11.52421 -11.35380 -11.27363 -11.18684 -10.94901 -10.81428 -10.63799 -10.60533 -10.20571 -10.12783 -10.03887 -9.80841 -9.76915 -9.55584 -9.43408 -8.95641 -8.46977 -8.02867 -6.53230 -5.82284 -3.38010 2.24215 2.89565 3.04099 3.33007 3.40353 3.41049 3.60248 3.88557 3.95908 4.13097 4.31485 4.42171 4.54568 4.82163 4.84439 5.05489 5.06125 5.12813 5.17997 5.28881 5.35322 5.41471 5.59472 5.61363 5.64031 5.76786 5.81569 5.86974 6.05119 6.14786 6.24993 6.29822 6.36892 6.40357 6.48968 6.57756 6.63991 6.68515 6.80914 6.89369 6.95748 7.04702 7.09118 7.34731 7.66940 7.71843 7.82611 7.86164 8.33594 8.46975 8.97854 9.19285 9.76623 10.37357 11.22979 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.027889 B = 0.002156 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.733962 B =12981.535051 C =13420.042515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.177 3.823 3 H 0.111 0.889 4 C 0.109 3.891 5 N -0.612 5.612 6 C 0.704 3.296 7 O -0.601 6.601 8 N -0.755 5.755 9 C 0.139 3.861 10 C -0.122 4.122 11 C -0.097 4.097 12 H 0.098 0.902 13 C 0.105 3.895 14 N -0.735 5.735 15 C 0.519 3.481 16 O -0.537 6.537 17 C -0.155 4.155 18 C 0.101 3.899 19 C 0.154 3.846 20 H 0.030 0.970 21 C -0.135 4.135 22 N -0.581 5.581 23 C -0.254 4.254 24 H 0.067 0.933 25 C 0.011 3.989 26 N -0.898 5.898 27 Si 0.901 3.099 28 H -0.288 1.288 29 H -0.291 1.291 30 H -0.280 1.280 31 H 0.072 0.928 32 H 0.027 0.973 33 H 0.018 0.982 34 H 0.055 0.945 35 H 0.079 0.921 36 H 0.394 0.606 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.409 0.591 44 H 0.106 0.894 45 H 0.108 0.892 46 H 0.064 0.936 47 H 0.059 0.941 48 H 0.065 0.935 49 H 0.038 0.962 50 H 0.055 0.945 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.574 -18.727 -4.887 19.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.071 3.929 3 H 0.129 0.871 4 C -0.015 4.015 5 N -0.347 5.347 6 C 0.406 3.594 7 O -0.480 6.480 8 N -0.414 5.414 9 C 0.015 3.985 10 C -0.160 4.160 11 C -0.116 4.116 12 H 0.116 0.884 13 C -0.020 4.020 14 N -0.391 5.391 15 C 0.306 3.694 16 O -0.413 6.413 17 C -0.195 4.195 18 C -0.024 4.024 19 C 0.046 3.954 20 H 0.047 0.953 21 C -0.193 4.193 22 N -0.304 5.304 23 C -0.383 4.383 24 H 0.085 0.915 25 C -0.188 4.188 26 N -0.541 5.541 27 Si 0.731 3.269 28 H -0.215 1.215 29 H -0.217 1.217 30 H -0.205 1.205 31 H 0.091 0.909 32 H 0.046 0.954 33 H 0.038 0.962 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.231 0.769 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.094 0.906 42 H 0.100 0.900 43 H 0.248 0.752 44 H 0.124 0.876 45 H 0.126 0.874 46 H 0.082 0.918 47 H 0.078 0.922 48 H 0.084 0.916 49 H 0.057 0.943 50 H 0.074 0.926 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.613 -18.267 -6.149 19.818 hybrid contribution 0.275 -0.087 1.238 1.271 sum -4.338 -18.354 -4.911 19.488 Atomic orbital electron populations 1.21941 0.98290 0.98181 1.00920 1.20845 0.92269 0.97176 0.82655 0.87111 1.22425 0.99707 0.78040 1.01316 1.47207 1.55883 1.10875 1.20762 1.15855 0.79054 0.80943 0.83576 1.90863 1.61320 1.67681 1.28170 1.45244 1.66129 1.11763 1.18265 1.21079 0.97752 0.89650 0.90055 1.21798 1.01321 0.94857 0.98017 1.22098 0.99002 0.95077 0.95427 0.88389 1.22162 1.02242 0.89087 0.88503 1.46257 1.52279 1.19790 1.20732 1.20995 0.77316 0.88278 0.82847 1.90770 1.56976 1.69557 1.24037 1.22518 1.01459 0.95245 1.00325 1.22284 0.99045 0.94212 0.86880 1.20790 0.96292 0.86935 0.91340 0.95262 1.21760 1.00829 0.97933 0.98740 1.44045 1.63249 1.02814 1.20269 1.19077 1.09377 0.95640 1.14249 0.91550 1.25327 0.96515 0.98841 0.98152 1.69888 1.28808 1.12682 1.42746 0.86321 0.79099 0.79605 0.81845 1.21481 1.21715 1.20506 0.90915 0.95395 0.96242 0.92683 0.90221 0.76942 0.91636 0.91808 0.90637 0.90242 0.90635 0.89957 0.75232 0.87586 0.87378 0.91760 0.92245 0.91557 0.94306 0.92637 0.93518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.00 8.90 37.15 0.33 -2.67 16 2 C 0.18 3.99 2.32 -67.49 -0.16 3.83 16 3 H 0.11 2.84 6.08 -51.93 -0.32 2.52 16 4 C 0.11 2.19 5.96 -3.60 -0.02 2.16 16 5 N -0.61 -10.87 2.59 -178.21 -0.46 -11.33 16 6 C 0.70 12.24 8.29 -86.92 -0.72 11.52 16 7 O -0.60 -12.58 15.78 5.29 0.08 -12.49 16 8 N -0.75 -9.28 5.45 -65.22 -0.36 -9.64 16 9 C 0.14 1.33 5.58 -4.04 -0.02 1.30 16 10 C -0.12 -0.64 4.69 -26.73 -0.13 -0.77 16 11 C -0.10 -0.46 3.12 -88.99 -0.28 -0.74 16 12 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 13 C 0.10 0.39 7.35 -3.12 -0.02 0.37 16 14 N -0.73 -4.40 6.24 -59.20 -0.37 -4.77 16 15 C 0.52 4.80 8.43 -10.86 -0.09 4.71 16 16 O -0.54 -7.49 18.03 5.55 0.10 -7.39 16 17 C -0.16 -1.03 5.89 -26.74 -0.16 -1.19 16 18 C 0.10 1.57 5.90 -3.60 -0.02 1.55 16 19 C 0.15 2.85 3.23 -67.48 -0.22 2.63 16 20 H 0.03 0.58 7.41 -51.93 -0.38 0.20 16 21 C -0.13 -2.20 8.01 37.16 0.30 -1.91 16 22 N -0.58 -13.11 2.68 -157.02 -0.42 -13.53 16 23 C -0.25 -6.28 8.39 -15.06 -0.13 -6.41 16 24 H 0.07 1.61 6.43 -52.49 -0.34 1.28 16 25 C 0.01 0.28 5.23 -17.43 -0.09 0.19 16 26 N -0.90 -24.04 9.67 55.49 0.54 -23.51 16 27 Si 0.90 20.50 29.55 -169.99 -5.02 15.48 16 28 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 29 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 30 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 31 H 0.07 1.81 7.08 -51.93 -0.37 1.44 16 32 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.02 0.41 7.02 -51.93 -0.36 0.05 16 34 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.08 1.65 6.99 -51.93 -0.36 1.29 16 36 H 0.39 3.99 5.96 -40.82 -0.24 3.74 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.65 7.74 -51.93 -0.40 0.25 16 39 H 0.07 0.35 7.93 -51.93 -0.41 -0.06 16 40 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.08 0.22 7.89 -51.93 -0.41 -0.19 16 42 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 43 H 0.41 1.94 8.96 -40.82 -0.37 1.57 16 44 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.11 0.66 7.75 -51.92 -0.40 0.26 16 46 H 0.06 1.02 8.12 -51.93 -0.42 0.59 16 47 H 0.06 0.71 5.57 -51.93 -0.29 0.42 16 48 H 0.07 1.21 7.70 -51.93 -0.40 0.81 16 49 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 50 H 0.05 0.92 7.36 -51.93 -0.38 0.54 16 51 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 LS Contribution 392.05 15.07 5.91 5.91 Total: -1.00 -32.98 392.05 -9.81 -42.79 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -8.38 Total: 3.88 kcal Atomic # 6 Polarization: 16.02 SS G_CDS: -1.42 Total: 14.60 kcal Atomic # 7 Polarization: -61.70 SS G_CDS: -1.07 Total: -62.77 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: 0.18 Total: -19.88 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.98 -9.81 -42.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926995144.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.904 kcal (2) G-P(sol) polarization free energy of solvation -32.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds