Wall clock time and date at job start Tue Mar 31 2020 22:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.75220 * 2 1 4 4 C 1.53371 * 109.61402 * 239.57321 * 2 1 3 5 5 N 1.46967 * 108.63348 * 289.67841 * 4 2 1 6 6 C 1.34772 * 120.59005 * 124.74980 * 5 4 2 7 7 O 1.21585 * 120.00550 * 5.10708 * 6 5 4 8 8 N 1.34778 * 120.00018 * 185.10955 * 6 5 4 9 9 C 1.46503 * 120.00353 * 185.05357 * 8 6 5 10 10 C 1.53001 * 109.47130 * 180.02562 * 9 8 6 11 11 C 1.52997 * 109.47099 * 180.02562 * 10 9 8 12 12 H 1.08999 * 110.85730 * 308.78512 * 11 10 9 13 13 C 1.54479 * 110.97010 * 184.99574 * 11 10 9 14 14 N 1.46764 * 105.47559 * 216.46115 * 13 11 10 15 15 C 1.34422 * 111.29806 * 17.02110 * 14 13 11 16 16 O 1.21285 * 124.94238 * 179.55388 * 15 14 13 17 17 C 1.51281 * 110.11618 * 359.58676 * 15 14 13 18 18 C 1.46962 * 118.81429 * 304.77345 * 5 4 2 19 19 C 1.53375 * 108.63204 * 55.22433 * 18 5 4 20 20 H 1.08997 * 109.75547 * 70.40721 * 19 18 5 21 21 C 1.53002 * 109.60874 * 190.83077 * 19 18 5 22 22 N 1.46966 * 109.61063 * 120.42212 * 2 1 3 23 23 C 1.36930 * 120.59918 * 244.79373 * 22 2 1 24 24 H 1.08001 * 120.00184 * 216.20674 * 23 22 2 25 25 C 1.38815 * 119.99736 * 36.21024 * 23 22 2 26 26 N 1.31611 * 120.00117 * 0.69677 * 25 23 22 27 27 Si 1.86805 * 119.99977 * 180.70172 * 25 23 22 28 28 H 1.48499 * 109.47152 * 89.99685 * 27 25 23 29 29 H 1.48496 * 109.46872 * 209.99903 * 27 25 23 30 30 H 1.48503 * 109.46734 * 330.00105 * 27 25 23 31 31 H 1.08997 * 109.47147 * 299.57628 * 1 2 3 32 32 H 1.09003 * 109.46643 * 59.57587 * 1 2 3 33 33 H 1.08990 * 109.46885 * 179.56994 * 1 2 3 34 34 H 1.09002 * 109.61400 * 169.93862 * 4 2 1 35 35 H 1.09003 * 109.60995 * 49.42301 * 4 2 1 36 36 H 0.97008 * 119.99676 * 5.05302 * 8 6 5 37 37 H 1.08998 * 109.46651 * 299.99518 * 9 8 6 38 38 H 1.09000 * 109.46914 * 59.99548 * 9 8 6 39 39 H 1.09006 * 109.46797 * 299.99605 * 10 9 8 40 40 H 1.09000 * 109.47184 * 59.99823 * 10 9 8 41 41 H 1.09000 * 110.24413 * 335.46490 * 13 11 10 42 42 H 1.09005 * 110.24290 * 97.46469 * 13 11 10 43 43 H 0.96998 * 124.35439 * 197.03375 * 14 13 11 44 44 H 1.09000 * 110.48703 * 225.06769 * 17 15 14 45 45 H 1.09007 * 110.48324 * 102.42571 * 17 15 14 46 46 H 1.09001 * 109.60788 * 295.48403 * 18 5 4 47 47 H 1.09002 * 109.60848 * 174.96465 * 18 5 4 48 48 H 1.08999 * 109.47562 * 179.14307 * 21 19 18 49 49 H 1.09000 * 109.47194 * 299.14764 * 21 19 18 50 50 H 1.09006 * 109.47152 * 59.14597 * 21 19 18 51 51 H 0.97003 * 120.00224 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8983 1.0259 0.0000 4 6 2.0448 -0.7317 -1.2457 5 7 1.7607 -2.1661 -1.0988 6 6 1.0600 -2.8266 -2.0417 7 8 0.7367 -2.2597 -3.0676 8 7 0.7175 -4.1156 -1.8475 9 6 0.0534 -4.8662 -2.9162 10 6 -0.2241 -6.2936 -2.4403 11 6 -0.9169 -7.0776 -3.5566 12 1 -1.7795 -6.5307 -3.9372 13 6 -1.3256 -8.4861 -3.0713 14 7 -1.1218 -9.3718 -4.2238 15 6 -0.3348 -8.7959 -5.1489 16 8 -0.0006 -9.3113 -6.1948 17 6 0.0741 -7.4118 -4.6955 18 6 2.2538 -2.8672 0.0949 19 6 1.7390 -2.1355 1.3407 20 1 0.6642 -2.2872 1.4392 21 6 2.4497 -2.6751 2.5835 22 7 2.0232 -0.7010 1.1938 23 6 2.7300 -0.0286 2.1547 24 1 3.5435 -0.5187 2.6689 25 6 2.4008 1.2830 2.4680 26 7 1.4006 1.8758 1.8512 27 14 3.3775 2.2069 3.7650 28 1 4.5164 2.9086 3.1204 29 1 2.4981 3.1999 4.4327 30 1 3.8942 1.2464 4.7728 31 1 -0.3633 0.5072 0.8937 32 1 -0.3633 0.5204 -0.8862 33 1 -0.3633 -1.0276 -0.0077 34 1 3.1199 -0.5797 -1.3412 35 1 1.5384 -0.3472 -2.1312 36 1 0.9106 -4.5463 -1.0000 37 1 -0.8877 -4.3792 -3.1713 38 1 0.6979 -4.8944 -3.7948 39 1 0.7170 -6.7808 -2.1848 40 1 -0.8687 -6.2649 -1.5618 41 1 -0.6927 -8.7970 -2.2401 42 1 -2.3736 -8.4924 -2.7715 43 1 -1.5058 -10.2586 -4.3073 44 1 -0.0282 -6.6971 -5.5122 45 1 1.0976 -7.4201 -4.3205 46 1 3.3439 -2.8671 0.0950 47 1 1.8855 -3.8931 0.0949 48 1 2.0934 -2.1431 3.4656 49 1 2.2375 -3.7389 2.6903 50 1 3.5248 -2.5277 2.4801 51 1 1.1707 2.7925 2.0699 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926995144.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:42 Heat of formation + Delta-G solvation = -59.486347 kcal Electronic energy + Delta-G solvation = -30409.573458 eV Core-core repulsion = 26343.635908 eV Total energy + Delta-G solvation = -4065.937551 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.44487 -41.17609 -39.07953 -37.94896 -36.20881 -35.61244 -34.26600 -33.65388 -32.80320 -29.92557 -29.60022 -28.37119 -27.65303 -26.76489 -25.38134 -23.90251 -22.43883 -21.87511 -21.46328 -21.24261 -20.24378 -19.20311 -18.35543 -17.79128 -17.26398 -17.19527 -16.91001 -16.61899 -15.97404 -15.81431 -15.67733 -15.43267 -15.24732 -15.05130 -14.72309 -14.60608 -14.49985 -14.17938 -13.85472 -13.55848 -13.43066 -13.19963 -13.13991 -12.87858 -12.84920 -12.74297 -12.42973 -12.32973 -12.24972 -12.21788 -11.92120 -11.83761 -11.75970 -11.70419 -11.50678 -11.42411 -11.01316 -10.90255 -10.39240 -10.12998 -10.05550 -9.45058 -8.34478 -7.74270 -5.31358 1.50881 1.53361 1.56393 1.59869 1.77472 2.24988 2.49257 2.56446 3.01493 3.41133 3.43455 3.51061 3.60866 3.81111 4.09721 4.22330 4.28268 4.29724 4.36417 4.39603 4.52507 4.62887 4.69532 4.72198 4.72378 4.76923 4.77904 4.80725 4.88565 4.92462 4.96225 5.02822 5.07278 5.17151 5.23732 5.25824 5.37267 5.42094 5.48351 5.63963 5.65045 5.78705 5.84016 5.89455 5.89916 6.03004 6.16728 6.56455 7.10894 7.25686 7.28522 7.66864 7.94773 8.50389 9.28080 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.027889 B = 0.002156 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.733962 B =12981.535051 C =13420.042515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.180 3.820 3 H 0.075 0.925 4 C 0.123 3.877 5 N -0.617 5.617 6 C 0.699 3.301 7 O -0.641 6.641 8 N -0.735 5.735 9 C 0.135 3.865 10 C -0.107 4.107 11 C -0.088 4.088 12 H 0.100 0.900 13 C 0.105 3.895 14 N -0.724 5.724 15 C 0.509 3.491 16 O -0.596 6.596 17 C -0.154 4.154 18 C 0.109 3.891 19 C 0.148 3.852 20 H 0.020 0.980 21 C -0.126 4.126 22 N -0.596 5.596 23 C -0.248 4.248 24 H 0.073 0.927 25 C -0.043 4.043 26 N -0.924 5.924 27 Si 0.957 3.043 28 H -0.292 1.292 29 H -0.302 1.302 30 H -0.269 1.269 31 H 0.043 0.957 32 H 0.028 0.972 33 H 0.024 0.976 34 H 0.053 0.947 35 H 0.068 0.932 36 H 0.408 0.592 37 H 0.052 0.948 38 H 0.055 0.945 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.105 0.895 43 H 0.415 0.585 44 H 0.097 0.903 45 H 0.116 0.884 46 H 0.068 0.932 47 H 0.106 0.894 48 H 0.041 0.959 49 H 0.083 0.917 50 H 0.052 0.948 51 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.486 -21.754 -3.392 22.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.073 3.927 3 H 0.092 0.908 4 C -0.003 4.003 5 N -0.352 5.352 6 C 0.400 3.600 7 O -0.524 6.524 8 N -0.394 5.394 9 C 0.011 3.989 10 C -0.145 4.145 11 C -0.108 4.108 12 H 0.118 0.882 13 C -0.018 4.018 14 N -0.378 5.378 15 C 0.296 3.704 16 O -0.478 6.478 17 C -0.194 4.194 18 C -0.016 4.016 19 C 0.041 3.959 20 H 0.037 0.963 21 C -0.184 4.184 22 N -0.319 5.319 23 C -0.378 4.378 24 H 0.091 0.909 25 C -0.239 4.239 26 N -0.570 5.570 27 Si 0.787 3.213 28 H -0.219 1.219 29 H -0.229 1.229 30 H -0.193 1.193 31 H 0.062 0.938 32 H 0.047 0.953 33 H 0.043 0.957 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.247 0.753 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.110 0.890 40 H 0.117 0.883 41 H 0.114 0.886 42 H 0.123 0.877 43 H 0.254 0.746 44 H 0.116 0.884 45 H 0.134 0.866 46 H 0.086 0.914 47 H 0.124 0.876 48 H 0.060 0.940 49 H 0.102 0.898 50 H 0.071 0.929 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -4.541 -21.377 -4.582 22.329 hybrid contribution 0.206 0.790 0.767 1.120 sum -4.335 -20.587 -3.815 21.382 Atomic orbital electron populations 1.21720 0.98408 0.97911 0.99407 1.20606 0.92006 0.95960 0.84136 0.90756 1.22002 0.99212 0.79744 0.99301 1.47164 1.56299 1.09947 1.21771 1.16074 0.78781 0.82286 0.82815 1.90840 1.62699 1.68998 1.29842 1.45132 1.64861 1.09916 1.19465 1.21282 0.96603 0.91720 0.89324 1.21710 1.02636 0.91702 0.98435 1.22050 0.98378 0.95860 0.94499 0.88189 1.22369 1.04116 0.87548 0.87786 1.46324 1.50657 1.20212 1.20591 1.21459 0.77264 0.89203 0.82434 1.90732 1.59412 1.71028 1.26589 1.22533 1.02478 0.93521 1.00914 1.22307 0.99315 0.95717 0.84225 1.21028 0.96193 0.84678 0.93992 0.96253 1.21683 1.00092 1.00304 0.96346 1.44246 1.63181 1.04653 1.19847 1.19350 1.09238 0.95641 1.13581 0.90949 1.25956 0.97746 1.00068 1.00119 1.70064 1.30479 1.12324 1.44141 0.85427 0.77507 0.78343 0.80016 1.21884 1.22910 1.19331 0.93838 0.95327 0.95655 0.92820 0.91354 0.75258 0.92925 0.92675 0.88992 0.88269 0.88627 0.87717 0.74561 0.88413 0.86595 0.91360 0.87612 0.94004 0.89808 0.92933 0.94511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.26 8.90 71.98 0.64 -4.62 16 2 C 0.18 8.26 2.32 45.03 0.10 8.37 16 3 H 0.07 3.98 6.08 -2.39 -0.01 3.96 16 4 C 0.12 4.93 5.96 86.41 0.51 5.44 16 5 N -0.62 -20.79 2.59 -836.00 -2.17 -22.95 16 6 C 0.70 22.95 8.29 179.06 1.49 24.44 16 7 O -0.64 -26.51 15.78 -3.98 -0.06 -26.57 16 8 N -0.73 -15.54 5.45 -478.53 -2.61 -18.15 16 9 C 0.13 2.18 5.58 86.38 0.48 2.66 16 10 C -0.11 -0.64 4.69 30.59 0.14 -0.50 16 11 C -0.09 -0.54 3.12 -9.74 -0.03 -0.57 16 12 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 13 C 0.11 0.35 7.35 86.83 0.64 0.99 16 14 N -0.72 -6.99 6.24 -459.79 -2.87 -9.86 16 15 C 0.51 8.97 8.43 87.90 0.74 9.71 16 16 O -0.60 -17.02 18.03 -3.05 -0.05 -17.08 16 17 C -0.15 -1.79 5.89 30.59 0.18 -1.61 16 18 C 0.11 3.00 5.90 86.42 0.51 3.51 16 19 C 0.15 5.11 3.23 45.03 0.15 5.26 16 20 H 0.02 0.73 7.41 -2.39 -0.02 0.71 16 21 C -0.13 -3.73 8.01 71.98 0.58 -3.16 16 22 N -0.60 -26.69 2.68 -650.69 -1.74 -28.43 16 23 C -0.25 -12.22 8.39 84.04 0.70 -11.51 16 24 H 0.07 3.44 6.43 -2.91 -0.02 3.42 16 25 C -0.04 -2.24 5.23 84.86 0.44 -1.80 16 26 N -0.92 -51.24 9.67 21.65 0.21 -51.03 16 27 Si 0.96 42.74 29.55 68.60 2.03 44.77 16 28 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 29 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 30 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 31 H 0.04 2.22 7.08 -2.39 -0.02 2.20 16 32 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.02 1.07 7.02 -2.39 -0.02 1.06 16 34 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.07 2.89 6.99 -2.39 -0.02 2.87 16 36 H 0.41 6.16 5.96 -92.70 -0.55 5.61 16 37 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.05 1.02 7.74 -2.39 -0.02 1.00 16 39 H 0.09 0.34 7.93 -2.38 -0.02 0.32 16 40 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 41 H 0.10 0.04 7.89 -2.39 -0.02 0.02 16 42 H 0.10 -0.01 8.14 -2.38 -0.02 -0.03 16 43 H 0.42 3.10 8.96 -92.71 -0.83 2.27 16 44 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.12 1.16 7.75 -2.38 -0.02 1.14 16 46 H 0.07 1.90 8.12 -2.39 -0.02 1.88 16 47 H 0.11 1.93 5.57 -2.39 -0.01 1.92 16 48 H 0.04 1.44 7.70 -2.39 -0.02 1.42 16 49 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 50 H 0.05 1.58 7.36 -2.38 -0.02 1.56 16 51 H 0.25 13.50 8.31 -92.71 -0.77 12.73 16 Total: -1.00 -76.21 392.05 -0.42 -76.63 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -0.43 Total: 16.08 kcal Atomic # 6 Polarization: 29.31 SS G_CDS: 7.28 Total: 36.59 kcal Atomic # 7 Polarization: -121.25 SS G_CDS: -9.18 Total: -130.43 kcal Atomic # 8 Polarization: -43.53 SS G_CDS: -0.12 Total: -43.65 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -76.21 -0.42 -76.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926995144.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.147 kcal (2) G-P(sol) polarization free energy of solvation -76.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds