Wall clock time and date at job start Tue Mar 31 2020 22:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.60980 * 2 1 4 4 C 1.53373 * 109.74880 * 239.57377 * 2 1 3 5 5 N 1.47001 * 108.77360 * 190.84046 * 4 2 1 6 6 C 1.34767 * 120.61634 * 235.16440 * 5 4 2 7 7 O 1.21585 * 120.00347 * 185.20221 * 6 5 4 8 8 N 1.34784 * 120.00031 * 5.19571 * 6 5 4 9 9 C 1.46495 * 120.00035 * 185.00969 * 8 6 5 10 10 C 1.52998 * 109.47122 * 180.02562 * 9 8 6 11 11 C 1.53006 * 109.47084 * 180.02562 * 10 9 8 12 12 H 1.08996 * 110.85865 * 51.20892 * 11 10 9 13 13 C 1.54479 * 110.96694 * 287.37534 * 11 10 9 14 14 N 1.46766 * 105.47267 * 216.46682 * 13 11 10 15 15 C 1.34419 * 111.30012 * 17.01874 * 14 13 11 16 16 O 1.21281 * 124.93715 * 179.55513 * 15 14 13 17 17 C 1.51283 * 110.11724 * 359.59321 * 15 14 13 18 18 C 1.46970 * 118.78764 * 54.91967 * 5 4 2 19 19 C 1.53373 * 108.77878 * 305.07782 * 18 5 4 20 20 H 1.09005 * 109.61065 * 289.42896 * 19 18 5 21 21 C 1.52995 * 109.61064 * 169.08285 * 19 18 5 22 22 N 1.46964 * 109.60868 * 120.34454 * 2 1 3 23 23 C 1.36938 * 120.59914 * 355.11700 * 22 2 1 24 24 H 1.07998 * 119.99740 * 56.29895 * 23 22 2 25 25 C 1.38814 * 120.00179 * 236.30513 * 23 22 2 26 26 N 1.31618 * 120.00038 * 18.23771 * 25 23 22 27 27 Si 1.86797 * 119.99814 * 198.24115 * 25 23 22 28 28 H 1.48501 * 109.47288 * 0.02562 * 27 25 23 29 29 H 1.48507 * 109.46911 * 119.99603 * 27 25 23 30 30 H 1.48493 * 109.47286 * 239.99535 * 27 25 23 31 31 H 1.08999 * 109.46880 * 303.77144 * 1 2 3 32 32 H 1.08998 * 109.47033 * 63.77577 * 1 2 3 33 33 H 1.08999 * 109.46816 * 183.77707 * 1 2 3 34 34 H 1.09007 * 109.60753 * 310.48926 * 4 2 1 35 35 H 1.08994 * 109.61195 * 70.82957 * 4 2 1 36 36 H 0.96992 * 119.99732 * 5.01194 * 8 6 5 37 37 H 1.09001 * 109.47366 * 299.99938 * 9 8 6 38 38 H 1.09007 * 109.47229 * 60.00097 * 9 8 6 39 39 H 1.09001 * 109.46831 * 300.00120 * 10 9 8 40 40 H 1.09004 * 109.47006 * 60.00394 * 10 9 8 41 41 H 1.09000 * 110.24932 * 335.46769 * 13 11 10 42 42 H 1.09005 * 110.24246 * 97.46692 * 13 11 10 43 43 H 0.97003 * 124.34456 * 197.04189 * 14 13 11 44 44 H 1.09000 * 110.48392 * 225.07056 * 17 15 14 45 45 H 1.08998 * 110.59884 * 102.47761 * 17 15 14 46 46 H 1.09001 * 109.60444 * 185.24736 * 18 5 4 47 47 H 1.08990 * 109.61167 * 64.91064 * 18 5 4 48 48 H 1.09009 * 109.47002 * 52.27074 * 21 19 18 49 49 H 1.09000 * 109.47431 * 172.26144 * 21 19 18 50 50 H 1.08999 * 109.47164 * 292.26905 * 21 19 18 51 51 H 0.97000 * 119.99885 * 174.95811 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0267 0.0000 4 6 2.0483 -0.7310 -1.2447 5 7 3.4947 -0.9483 -1.0978 6 6 4.3534 -0.5132 -2.0409 7 8 5.5364 -0.7808 -1.9561 8 7 3.9008 0.2186 -3.0784 9 6 4.8129 0.5986 -4.1599 10 6 4.0527 1.4197 -5.2033 11 6 5.0052 1.8160 -6.3333 12 1 5.5385 0.9453 -6.7146 13 6 5.9920 2.9091 -5.8666 14 7 6.1812 3.7872 -7.0273 15 6 5.2115 3.6054 -7.9402 16 8 5.1233 4.2079 -8.9891 17 6 4.2457 2.5408 -7.4686 18 6 3.9879 -1.6441 0.0991 19 6 3.4697 -0.9131 1.3439 20 1 3.9757 0.0475 1.4412 21 6 3.7377 -1.7631 2.5874 22 7 2.0232 -0.6994 1.1948 23 6 1.1509 -1.1437 2.1522 24 1 0.3466 -1.8118 1.8817 25 6 1.3002 -0.7352 3.4705 26 7 2.0229 0.3282 3.7521 27 14 0.4754 -1.6947 4.8447 28 1 -0.2734 -2.8403 4.2683 29 1 1.5084 -2.2014 5.7837 30 1 -0.4637 -0.8057 5.5746 31 1 -0.3633 0.5713 0.8543 32 1 -0.3633 0.4541 -0.9219 33 1 -0.3633 -1.0254 0.0677 34 1 1.5444 -1.6929 -1.3404 35 1 1.8546 -0.1269 -2.1310 36 1 2.9712 0.4937 -3.1088 37 1 5.6299 1.1949 -3.7537 38 1 5.2163 -0.2997 -4.6275 39 1 3.2355 0.8238 -5.6097 40 1 3.6498 2.3180 -4.7355 41 1 5.5674 3.4703 -5.0343 42 1 6.9415 2.4602 -5.5745 43 1 6.9122 4.4175 -7.1233 44 1 4.0172 1.8474 -8.2780 45 1 3.3312 2.9946 -7.0866 46 1 5.0779 -1.6414 0.1006 47 1 3.6247 -2.6717 0.1007 48 1 4.7896 -2.0480 2.6130 49 1 3.4957 -1.1869 3.4805 50 1 3.1190 -2.6599 2.5547 51 1 2.0678 0.6565 4.6638 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926995145.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:48 Heat of formation + Delta-G solvation = -36.407665 kcal Electronic energy + Delta-G solvation = -30243.959214 eV Core-core repulsion = 26179.022430 eV Total energy + Delta-G solvation = -4064.936784 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.71540 -39.95462 -37.67213 -37.13867 -35.21003 -34.22814 -32.97363 -32.63438 -31.31408 -29.50870 -27.78406 -27.22742 -26.15617 -25.54432 -23.97186 -23.04647 -21.18667 -20.80746 -20.40498 -20.09426 -19.13773 -17.86744 -17.69353 -16.69448 -16.23064 -15.97905 -15.56127 -15.33317 -15.05669 -14.75161 -14.45679 -14.32656 -14.04827 -13.81045 -13.71457 -13.63883 -13.52125 -13.00003 -12.70686 -12.62936 -12.36062 -12.08065 -11.75157 -11.63389 -11.47958 -11.43680 -11.35026 -11.19292 -10.93388 -10.88679 -10.57008 -10.52955 -10.35544 -10.21609 -10.08401 -9.88770 -9.82151 -9.55540 -9.51678 -9.00605 -8.35128 -7.98536 -6.35036 -5.81833 -3.64210 2.23768 2.93384 2.98955 3.25537 3.36285 3.38209 3.53694 3.89106 3.95099 4.10324 4.29361 4.35734 4.54470 4.82755 4.85489 5.05523 5.09129 5.12841 5.16286 5.20497 5.29858 5.36120 5.56411 5.62370 5.65429 5.75685 5.79566 5.88724 6.01919 6.17093 6.26911 6.29936 6.36226 6.38496 6.44060 6.58684 6.60477 6.62086 6.77189 6.86409 6.94019 7.00847 7.16139 7.32250 7.45751 7.65668 7.82967 7.86963 8.27658 8.57702 8.91458 9.13698 9.64200 10.43761 11.10496 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.024559 B = 0.002140 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.822697 B =13083.328343 C =13517.340140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.156 3.844 3 H 0.027 0.973 4 C 0.100 3.900 5 N -0.615 5.615 6 C 0.705 3.295 7 O -0.603 6.603 8 N -0.754 5.754 9 C 0.139 3.861 10 C -0.123 4.123 11 C -0.096 4.096 12 H 0.097 0.903 13 C 0.099 3.901 14 N -0.733 5.733 15 C 0.519 3.481 16 O -0.539 6.539 17 C -0.152 4.152 18 C 0.112 3.888 19 C 0.182 3.818 20 H 0.030 0.970 21 C -0.141 4.141 22 N -0.575 5.575 23 C -0.268 4.268 24 H 0.052 0.948 25 C 0.041 3.959 26 N -0.875 5.875 27 Si 0.885 3.115 28 H -0.273 1.273 29 H -0.284 1.284 30 H -0.288 1.288 31 H 0.065 0.935 32 H 0.034 0.966 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.395 0.605 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.410 0.590 44 H 0.104 0.896 45 H 0.108 0.892 46 H 0.078 0.922 47 H 0.058 0.942 48 H 0.025 0.975 49 H 0.088 0.912 50 H 0.052 0.948 51 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.263 2.277 -16.594 17.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.049 3.951 3 H 0.045 0.955 4 C -0.025 4.025 5 N -0.350 5.350 6 C 0.406 3.594 7 O -0.482 6.482 8 N -0.413 5.413 9 C 0.014 3.986 10 C -0.161 4.161 11 C -0.115 4.115 12 H 0.116 0.884 13 C -0.025 4.025 14 N -0.388 5.388 15 C 0.305 3.695 16 O -0.416 6.416 17 C -0.192 4.192 18 C -0.012 4.012 19 C 0.075 3.925 20 H 0.048 0.952 21 C -0.199 4.199 22 N -0.299 5.299 23 C -0.398 4.398 24 H 0.070 0.930 25 C -0.162 4.162 26 N -0.514 5.514 27 Si 0.713 3.287 28 H -0.197 1.197 29 H -0.211 1.211 30 H -0.214 1.214 31 H 0.084 0.916 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.232 0.768 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.103 0.897 43 H 0.248 0.752 44 H 0.122 0.878 45 H 0.126 0.874 46 H 0.097 0.903 47 H 0.076 0.924 48 H 0.044 0.956 49 H 0.107 0.893 50 H 0.071 0.929 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.078 2.346 -16.887 17.530 hybrid contribution -0.519 0.065 0.898 1.039 sum 3.559 2.411 -15.989 16.557 Atomic orbital electron populations 1.21642 0.95030 1.01916 0.99880 1.20851 0.93426 0.93666 0.87170 0.95526 1.22335 0.80387 1.00592 0.99187 1.47222 1.06210 1.59958 1.21586 1.15855 0.84950 0.78898 0.79693 1.90858 1.15066 1.63978 1.78338 1.45238 1.13830 1.58743 1.23462 1.21111 0.92377 0.98605 0.86518 1.21832 0.98314 1.01008 0.94949 1.22093 0.96167 0.98095 0.95171 0.88447 1.22298 1.00672 0.91235 0.88292 1.46276 1.29138 1.42619 1.20775 1.20941 0.82290 0.83297 0.82965 1.90765 1.75213 1.51859 1.23758 1.22428 0.99071 0.97858 0.99890 1.22364 0.99168 0.95326 0.84362 1.20633 0.85485 0.95366 0.90976 0.95175 1.21928 0.97136 1.00509 1.00321 1.43900 1.00917 1.65107 1.20014 1.18628 1.10836 1.23562 0.86758 0.93034 1.25665 0.96505 0.94868 0.99172 1.70042 1.41088 1.21026 1.19239 0.86544 0.79231 0.80337 0.82592 1.19733 1.21058 1.21432 0.91602 0.94652 0.92594 0.91770 0.92181 0.76793 0.91666 0.91815 0.90182 0.90443 0.90395 0.89739 0.75161 0.87799 0.87404 0.90339 0.92364 0.95650 0.89304 0.92910 0.93377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 8.22 37.16 0.31 -1.88 16 2 C 0.16 2.99 3.65 -67.48 -0.25 2.74 16 3 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 4 C 0.10 1.57 5.89 -3.58 -0.02 1.55 16 5 N -0.61 -10.84 2.96 -178.18 -0.53 -11.37 16 6 C 0.70 12.03 8.29 -86.92 -0.72 11.31 16 7 O -0.60 -12.28 15.78 5.29 0.08 -12.20 16 8 N -0.75 -9.10 5.45 -65.23 -0.36 -9.45 16 9 C 0.14 1.25 5.58 -4.05 -0.02 1.23 16 10 C -0.12 -0.65 4.69 -26.73 -0.13 -0.78 16 11 C -0.10 -0.46 3.12 -88.98 -0.28 -0.74 16 12 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 13 C 0.10 0.50 6.82 -3.12 -0.02 0.48 16 14 N -0.73 -4.87 6.24 -59.20 -0.37 -5.24 16 15 C 0.52 4.74 8.43 -10.86 -0.09 4.65 16 16 O -0.54 -7.38 18.03 5.56 0.10 -7.28 16 17 C -0.15 -0.88 6.42 -26.74 -0.17 -1.05 16 18 C 0.11 2.18 5.88 -3.59 -0.02 2.16 16 19 C 0.18 4.03 3.26 -67.48 -0.22 3.81 16 20 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 21 C -0.14 -3.08 7.88 37.16 0.29 -2.79 16 22 N -0.57 -13.05 2.72 -157.02 -0.43 -13.48 16 23 C -0.27 -6.58 6.57 -15.06 -0.10 -6.68 16 24 H 0.05 1.29 7.15 -52.49 -0.38 0.92 16 25 C 0.04 1.03 3.42 -17.43 -0.06 0.97 16 26 N -0.87 -23.55 11.79 55.49 0.65 -22.90 16 27 Si 0.88 19.95 29.59 -169.99 -5.03 14.92 16 28 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 29 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 30 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 31 H 0.06 1.29 7.89 -51.93 -0.41 0.88 16 32 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.05 0.98 7.29 -51.93 -0.38 0.60 16 34 H 0.06 1.02 8.12 -51.93 -0.42 0.59 16 35 H 0.06 0.73 5.59 -51.93 -0.29 0.44 16 36 H 0.40 4.00 5.97 -40.82 -0.24 3.75 16 37 H 0.07 0.64 7.74 -51.93 -0.40 0.24 16 38 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 39 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.08 0.39 7.92 -51.93 -0.41 -0.02 16 41 H 0.08 0.38 7.74 -51.93 -0.40 -0.02 16 42 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.41 2.29 8.96 -40.82 -0.37 1.92 16 44 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.11 0.53 7.90 -51.93 -0.41 0.12 16 46 H 0.08 1.56 7.02 -51.93 -0.36 1.19 16 47 H 0.06 1.11 8.11 -51.93 -0.42 0.69 16 48 H 0.02 0.48 8.14 -51.92 -0.42 0.06 16 49 H 0.09 2.19 5.11 -51.93 -0.27 1.92 16 50 H 0.05 1.15 7.53 -51.93 -0.39 0.76 16 51 H 0.26 6.70 8.32 -40.82 -0.34 6.36 16 LS Contribution 393.63 15.07 5.93 5.93 Total: -1.00 -32.92 393.63 -9.93 -42.86 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -8.49 Total: 3.23 kcal Atomic # 6 Polarization: 16.47 SS G_CDS: -1.50 Total: 14.97 kcal Atomic # 7 Polarization: -61.41 SS G_CDS: -1.02 Total: -62.43 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: 0.18 Total: -19.47 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.03 Total: 14.92 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.92 -9.93 -42.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926995145.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.448 kcal (2) G-P(sol) polarization free energy of solvation -32.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds