Wall clock time and date at job start Tue Mar 31 2020 21:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.49637 * 2 1 4 4 C 1.53193 * 109.52672 * 239.92160 * 2 1 3 5 5 N 1.46921 * 108.77531 * 185.39504 * 4 2 1 6 6 C 1.36931 * 120.62915 * 233.58517 * 5 4 2 7 7 H 1.08007 * 120.00108 * 151.83480 * 6 5 4 8 8 C 1.38819 * 120.00283 * 331.83686 * 6 5 4 9 9 N 1.31622 * 119.99483 * 343.07260 * 8 6 5 10 10 Si 1.86798 * 120.00167 * 163.07572 * 8 6 5 11 11 H 1.48507 * 109.47335 * 359.97438 * 10 8 6 12 12 H 1.48506 * 109.47142 * 119.99801 * 10 8 6 13 13 H 1.48496 * 109.47148 * 239.99705 * 10 8 6 14 14 C 1.46924 * 118.73897 * 53.60651 * 5 4 2 15 15 C 1.53187 * 108.76567 * 306.38568 * 14 5 4 16 16 C 1.53032 * 109.31581 * 54.65610 * 15 14 5 17 17 H 1.08998 * 109.46429 * 58.62414 * 16 15 14 18 18 N 1.46505 * 109.46416 * 178.60422 * 16 15 14 19 19 C 1.34774 * 119.99492 * 275.02621 * 18 16 15 20 20 O 1.21284 * 120.00337 * 359.97438 * 19 18 16 21 21 C 1.50699 * 119.99717 * 179.72060 * 19 18 16 22 22 N 1.46905 * 109.47212 * 180.27428 * 21 19 18 23 23 C 1.47185 * 110.99943 * 170.00238 * 22 21 19 24 24 C 1.52981 * 108.73587 * 54.36827 * 23 22 21 25 25 N 1.46018 * 110.03705 * 50.28908 * 24 23 22 26 26 C 1.46495 * 118.53155 * 161.86520 * 25 24 23 27 27 C 1.33711 * 122.93018 * 341.84299 * 25 24 23 28 28 O 1.21278 * 118.62462 * 181.68899 * 27 25 24 29 29 C 1.46901 * 111.00098 * 292.89291 * 22 21 19 30 30 H 1.08995 * 109.47607 * 299.93292 * 1 2 3 31 31 H 1.09001 * 109.47044 * 59.93759 * 1 2 3 32 32 H 1.09003 * 109.46910 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.58305 * 305.18462 * 4 2 1 34 34 H 1.09003 * 109.58337 * 65.60568 * 4 2 1 35 35 H 0.97001 * 119.99319 * 180.02562 * 9 8 6 36 36 H 1.09008 * 109.58337 * 66.17975 * 14 5 4 37 37 H 1.09001 * 109.58879 * 186.45653 * 14 5 4 38 38 H 1.09003 * 109.50852 * 294.69397 * 15 14 5 39 39 H 1.09004 * 109.48904 * 174.60250 * 15 14 5 40 40 H 0.96993 * 120.00072 * 95.01892 * 18 16 15 41 41 H 1.08994 * 109.47425 * 300.27405 * 21 19 18 42 42 H 1.09004 * 109.47262 * 60.27629 * 21 19 18 43 43 H 1.08998 * 109.59511 * 174.14518 * 23 22 21 44 44 H 1.09005 * 109.59409 * 294.43919 * 23 22 21 45 45 H 1.08994 * 109.37662 * 170.46565 * 24 23 22 46 46 H 1.09004 * 109.37173 * 290.12148 * 24 23 22 47 47 H 1.08997 * 109.47207 * 89.99967 * 26 25 24 48 48 H 1.09004 * 109.47291 * 209.99876 * 26 25 24 49 49 H 1.09000 * 109.47277 * 330.00072 * 26 25 24 50 50 H 1.09000 * 109.38458 * 47.08840 * 29 22 21 51 51 H 1.09001 * 109.38840 * 166.77294 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0420 -0.7236 -1.2494 5 7 3.5053 -0.8282 -1.1690 6 6 4.2943 -0.3780 -2.1936 7 1 5.2966 -0.0306 -1.9909 8 6 3.8058 -0.3682 -3.4930 9 7 2.7430 -1.0806 -3.8019 10 14 4.6568 0.6560 -4.8030 11 1 5.8192 1.3597 -4.2037 12 1 5.1254 -0.2310 -5.8980 13 1 3.7022 1.6540 -5.3487 14 6 4.1060 -1.4253 0.0316 15 6 3.5708 -0.6936 1.2664 16 6 2.0408 -0.7227 1.2486 17 1 1.6974 -1.7571 1.2353 18 7 1.5258 -0.0527 2.4453 19 6 1.3973 -0.7381 3.5986 20 8 1.7076 -1.9097 3.6456 21 6 0.8735 -0.0473 4.8312 22 7 0.8349 -1.0010 5.9480 23 6 0.5572 -0.3135 7.2194 24 6 -0.7281 0.5020 7.0665 25 7 -1.7887 -0.3349 6.5126 26 6 -3.1774 0.1088 6.6567 27 6 -1.5489 -1.4879 5.8794 28 8 -2.4871 -2.1058 5.4224 29 6 -0.1658 -2.0499 5.7102 30 1 -0.3634 0.5128 0.8905 31 1 -0.3633 0.5148 -0.8894 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6064 -1.7217 -1.2979 34 1 1.7644 -0.1579 -2.1388 35 1 2.4020 -1.0740 -4.7099 36 1 3.8387 -2.4806 0.0875 37 1 5.1904 -1.3250 -0.0138 38 1 3.9151 0.3406 1.2544 39 1 3.9336 -1.1878 2.1677 40 1 1.2774 0.8841 2.4076 41 1 1.5284 0.7854 5.0871 42 1 -0.1319 0.3271 4.6384 43 1 0.4307 -1.0497 8.0131 44 1 1.3866 0.3498 7.4650 45 1 -1.0362 0.8777 8.0422 46 1 -0.5451 1.3434 6.3981 47 1 -3.4534 0.7231 5.7996 48 1 -3.8332 -0.7604 6.7070 49 1 -3.2789 0.6939 7.5707 50 1 -0.0529 -2.4345 4.6965 51 1 -0.0154 -2.8615 6.4221 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942201390.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:45 Heat of formation + Delta-G solvation = -28.752504 kcal Electronic energy + Delta-G solvation = -30963.503582 eV Core-core repulsion = 26898.898751 eV Total energy + Delta-G solvation = -4064.604831 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 4.88 seconds Orbital eigenvalues (eV) -41.27290 -39.69701 -37.96995 -37.18901 -35.31561 -34.46755 -32.38843 -31.83688 -30.47186 -29.96899 -28.96236 -27.28951 -25.92590 -25.23122 -24.75772 -23.03923 -22.06837 -20.87264 -20.37789 -19.49668 -18.69834 -17.59701 -17.11503 -16.87644 -16.56716 -16.33347 -15.91895 -15.53863 -15.08945 -14.82583 -14.72263 -14.04506 -13.83668 -13.71397 -13.54608 -13.45043 -13.32596 -13.09992 -12.99127 -12.84774 -12.54279 -12.51116 -12.15507 -11.95683 -11.78367 -11.72479 -11.45260 -11.29852 -11.07982 -10.73912 -10.69307 -10.65901 -10.32456 -10.16877 -9.99198 -9.86276 -9.65966 -9.42045 -9.19681 -8.73590 -8.62079 -8.45526 -6.67994 -5.79574 -3.21914 2.27637 2.48053 2.74402 3.05486 3.36349 3.44517 3.46634 3.65236 4.03233 4.36587 4.40696 4.49011 4.58525 4.77717 4.83720 4.90022 4.99716 5.03858 5.13004 5.17879 5.24930 5.30486 5.33118 5.43212 5.46239 5.56304 5.58850 5.68536 5.88551 5.89413 6.08905 6.13318 6.25132 6.29462 6.36072 6.42068 6.47710 6.51986 6.60273 6.69561 6.80426 6.95375 6.97878 7.00520 7.33519 7.60664 7.72118 7.77805 7.80350 8.39150 8.44635 9.20665 9.83861 10.41040 11.29162 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.024406 B = 0.002438 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.986266 B =11479.873435 C =11879.054813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.122 4.122 3 H 0.067 0.933 4 C 0.181 3.819 5 N -0.593 5.593 6 C -0.251 4.251 7 H 0.066 0.934 8 C 0.002 3.998 9 N -0.902 5.902 10 Si 0.901 3.099 11 H -0.278 1.278 12 H -0.290 1.290 13 H -0.289 1.289 14 C 0.147 3.853 15 C -0.139 4.139 16 C 0.158 3.842 17 H 0.082 0.918 18 N -0.721 5.721 19 C 0.510 3.490 20 O -0.523 6.523 21 C 0.026 3.974 22 N -0.505 5.505 23 C 0.037 3.963 24 C 0.074 3.926 25 N -0.615 5.615 26 C 0.079 3.921 27 C 0.482 3.518 28 O -0.543 6.543 29 C 0.039 3.961 30 H 0.040 0.960 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.021 0.979 34 H 0.091 0.909 35 H 0.253 0.747 36 H 0.020 0.980 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.394 0.606 41 H 0.109 0.891 42 H 0.064 0.936 43 H 0.091 0.909 44 H 0.103 0.897 45 H 0.083 0.917 46 H 0.069 0.931 47 H 0.055 0.945 48 H 0.078 0.922 49 H 0.069 0.931 50 H 0.130 0.870 51 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.072 7.396 24.115 26.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.143 4.143 3 H 0.085 0.915 4 C 0.055 3.945 5 N -0.316 5.316 6 C -0.381 4.381 7 H 0.084 0.916 8 C -0.197 4.197 9 N -0.546 5.546 10 Si 0.731 3.269 11 H -0.203 1.203 12 H -0.217 1.217 13 H -0.216 1.216 14 C 0.020 3.980 15 C -0.179 4.179 16 C 0.055 3.945 17 H 0.100 0.900 18 N -0.372 5.372 19 C 0.294 3.706 20 O -0.399 6.399 21 C -0.105 4.105 22 N -0.228 5.228 23 C -0.091 4.091 24 C -0.051 4.051 25 N -0.350 5.350 26 C -0.064 4.064 27 C 0.269 3.731 28 O -0.419 6.419 29 C -0.092 4.092 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.039 0.961 34 H 0.109 0.891 35 H 0.063 0.937 36 H 0.038 0.962 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.227 0.773 41 H 0.127 0.873 42 H 0.082 0.918 43 H 0.109 0.891 44 H 0.121 0.879 45 H 0.101 0.899 46 H 0.088 0.912 47 H 0.073 0.927 48 H 0.097 0.903 49 H 0.087 0.913 50 H 0.148 0.852 51 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -7.901 5.937 23.748 25.723 hybrid contribution -0.601 1.596 -0.693 1.841 sum -8.502 7.533 23.056 25.702 Atomic orbital electron populations 1.21721 0.95947 1.01499 1.00481 1.22166 0.94617 1.00593 0.96911 0.91480 1.20794 0.83072 0.97078 0.93569 1.44107 1.01721 1.69398 1.16324 1.19227 0.98024 1.35132 0.85724 0.91610 1.25063 0.98555 0.99047 0.97025 1.70040 1.25716 1.40205 1.18685 0.86238 0.78902 0.79928 0.81793 1.20269 1.21718 1.21601 1.20881 0.96662 0.94319 0.86140 1.22373 0.94760 1.01246 0.99512 1.21054 0.93817 0.97158 0.82458 0.90031 1.46279 1.66079 1.14303 1.10551 1.20276 0.78615 0.87509 0.84163 1.90698 1.48923 1.15965 1.84310 1.22147 1.01577 0.95833 0.90954 1.62180 1.47195 1.12090 1.01309 1.22680 0.95518 0.98460 0.92484 1.22222 0.88601 0.94403 0.99854 1.47471 1.07857 1.22421 1.57241 1.21691 0.82479 1.00935 1.01252 1.21547 0.93543 0.80564 0.77455 1.90731 1.45041 1.58300 1.47859 1.22658 0.83436 0.95483 1.07613 0.94050 0.92621 0.92997 0.96135 0.89062 0.93657 0.96192 0.92567 0.92394 0.92574 0.77272 0.87317 0.91798 0.89068 0.87874 0.89856 0.91248 0.92666 0.90323 0.91251 0.85222 0.86708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.03 37.16 0.34 -1.82 16 2 C -0.12 -2.19 2.46 -90.50 -0.22 -2.41 16 3 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 4 C 0.18 4.22 4.59 -3.71 -0.02 4.20 16 5 N -0.59 -14.72 2.99 -172.32 -0.52 -15.24 16 6 C -0.25 -6.83 9.58 -15.06 -0.14 -6.97 16 7 H 0.07 1.76 7.89 -52.48 -0.41 1.35 16 8 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 9 N -0.90 -25.99 11.20 55.49 0.62 -25.37 16 10 Si 0.90 21.48 29.59 -169.99 -5.03 16.45 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 14 C 0.15 3.15 6.52 -3.71 -0.02 3.13 16 15 C -0.14 -2.49 5.65 -26.62 -0.15 -2.64 16 16 C 0.16 2.69 1.88 -67.89 -0.13 2.56 16 17 H 0.08 1.60 7.58 -51.93 -0.39 1.21 16 18 N -0.72 -9.48 4.36 -53.77 -0.23 -9.72 16 19 C 0.51 6.84 7.39 -10.99 -0.08 6.76 16 20 O -0.52 -9.09 14.18 5.55 0.08 -9.02 16 21 C 0.03 0.24 4.51 -4.97 -0.02 0.21 16 22 N -0.50 -4.68 4.75 -237.55 -1.13 -5.81 16 23 C 0.04 0.20 6.02 -3.68 -0.02 0.18 16 24 C 0.07 0.36 5.69 -4.31 -0.02 0.34 16 25 N -0.61 -5.20 3.04 -182.48 -0.55 -5.75 16 26 C 0.08 0.58 10.29 59.84 0.62 1.19 16 27 C 0.48 5.72 6.81 -11.67 -0.08 5.64 16 28 O -0.54 -8.70 16.33 5.56 0.09 -8.61 16 29 C 0.04 0.43 5.49 -5.19 -0.03 0.40 16 30 H 0.04 0.54 7.36 -51.93 -0.38 0.16 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.09 2.37 6.06 -51.93 -0.31 2.06 16 35 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 36 H 0.02 0.45 8.14 -51.92 -0.42 0.02 16 37 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.39 4.11 8.31 -40.82 -0.34 3.78 16 41 H 0.11 0.71 8.08 -51.93 -0.42 0.29 16 42 H 0.06 0.55 6.23 -51.93 -0.32 0.23 16 43 H 0.09 0.46 8.08 -51.93 -0.42 0.04 16 44 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.08 0.24 7.98 -51.93 -0.41 -0.17 16 46 H 0.07 0.30 7.10 -51.93 -0.37 -0.07 16 47 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.08 0.71 7.26 -51.93 -0.38 0.33 16 49 H 0.07 0.31 7.92 -51.93 -0.41 -0.10 16 50 H 0.13 1.84 5.88 -51.93 -0.31 1.54 16 51 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 391.98 15.07 5.91 5.91 Total: -1.00 -34.42 391.98 -9.50 -43.92 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -8.66 Total: 2.51 kcal Atomic # 6 Polarization: 10.81 SS G_CDS: -0.08 Total: 10.73 kcal Atomic # 7 Polarization: -60.08 SS G_CDS: -1.81 Total: -61.89 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: 0.17 Total: -17.63 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.42 -9.50 -43.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942201390.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.169 kcal (2) G-P(sol) polarization free energy of solvation -34.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.89 seconds