Wall clock time and date at job start Tue Mar 31 2020 21:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.49637 * 2 1 4 4 C 1.53193 * 109.52672 * 239.92160 * 2 1 3 5 5 N 1.46921 * 108.77531 * 185.39504 * 4 2 1 6 6 C 1.36931 * 120.62915 * 233.58517 * 5 4 2 7 7 H 1.08007 * 120.00108 * 151.83480 * 6 5 4 8 8 C 1.38819 * 120.00283 * 331.83686 * 6 5 4 9 9 N 1.31622 * 119.99483 * 343.07260 * 8 6 5 10 10 Si 1.86798 * 120.00167 * 163.07572 * 8 6 5 11 11 H 1.48507 * 109.47335 * 359.97438 * 10 8 6 12 12 H 1.48506 * 109.47142 * 119.99801 * 10 8 6 13 13 H 1.48496 * 109.47148 * 239.99705 * 10 8 6 14 14 C 1.46924 * 118.73897 * 53.60651 * 5 4 2 15 15 C 1.53187 * 108.76567 * 306.38568 * 14 5 4 16 16 C 1.53032 * 109.31581 * 54.65610 * 15 14 5 17 17 H 1.08998 * 109.46429 * 58.62414 * 16 15 14 18 18 N 1.46505 * 109.46416 * 178.60422 * 16 15 14 19 19 C 1.34774 * 119.99492 * 275.02621 * 18 16 15 20 20 O 1.21284 * 120.00337 * 359.97438 * 19 18 16 21 21 C 1.50699 * 119.99717 * 179.72060 * 19 18 16 22 22 N 1.46905 * 109.47212 * 180.27428 * 21 19 18 23 23 C 1.47185 * 110.99943 * 170.00238 * 22 21 19 24 24 C 1.52981 * 108.73587 * 54.36827 * 23 22 21 25 25 N 1.46018 * 110.03705 * 50.28908 * 24 23 22 26 26 C 1.46495 * 118.53155 * 161.86520 * 25 24 23 27 27 C 1.33711 * 122.93018 * 341.84299 * 25 24 23 28 28 O 1.21278 * 118.62462 * 181.68899 * 27 25 24 29 29 C 1.46901 * 111.00098 * 292.89291 * 22 21 19 30 30 H 1.08995 * 109.47607 * 299.93292 * 1 2 3 31 31 H 1.09001 * 109.47044 * 59.93759 * 1 2 3 32 32 H 1.09003 * 109.46910 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.58305 * 305.18462 * 4 2 1 34 34 H 1.09003 * 109.58337 * 65.60568 * 4 2 1 35 35 H 0.97001 * 119.99319 * 180.02562 * 9 8 6 36 36 H 1.09008 * 109.58337 * 66.17975 * 14 5 4 37 37 H 1.09001 * 109.58879 * 186.45653 * 14 5 4 38 38 H 1.09003 * 109.50852 * 294.69397 * 15 14 5 39 39 H 1.09004 * 109.48904 * 174.60250 * 15 14 5 40 40 H 0.96993 * 120.00072 * 95.01892 * 18 16 15 41 41 H 1.08994 * 109.47425 * 300.27405 * 21 19 18 42 42 H 1.09004 * 109.47262 * 60.27629 * 21 19 18 43 43 H 1.08998 * 109.59511 * 174.14518 * 23 22 21 44 44 H 1.09005 * 109.59409 * 294.43919 * 23 22 21 45 45 H 1.08994 * 109.37662 * 170.46565 * 24 23 22 46 46 H 1.09004 * 109.37173 * 290.12148 * 24 23 22 47 47 H 1.08997 * 109.47207 * 89.99967 * 26 25 24 48 48 H 1.09004 * 109.47291 * 209.99876 * 26 25 24 49 49 H 1.09000 * 109.47277 * 330.00072 * 26 25 24 50 50 H 1.09000 * 109.38458 * 47.08840 * 29 22 21 51 51 H 1.09001 * 109.38840 * 166.77294 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0420 -0.7236 -1.2494 5 7 3.5053 -0.8282 -1.1690 6 6 4.2943 -0.3780 -2.1936 7 1 5.2966 -0.0306 -1.9909 8 6 3.8058 -0.3682 -3.4930 9 7 2.7430 -1.0806 -3.8019 10 14 4.6568 0.6560 -4.8030 11 1 5.8192 1.3597 -4.2037 12 1 5.1254 -0.2310 -5.8980 13 1 3.7022 1.6540 -5.3487 14 6 4.1060 -1.4253 0.0316 15 6 3.5708 -0.6936 1.2664 16 6 2.0408 -0.7227 1.2486 17 1 1.6974 -1.7571 1.2353 18 7 1.5258 -0.0527 2.4453 19 6 1.3973 -0.7381 3.5986 20 8 1.7076 -1.9097 3.6456 21 6 0.8735 -0.0473 4.8312 22 7 0.8349 -1.0010 5.9480 23 6 0.5572 -0.3135 7.2194 24 6 -0.7281 0.5020 7.0665 25 7 -1.7887 -0.3349 6.5126 26 6 -3.1774 0.1088 6.6567 27 6 -1.5489 -1.4879 5.8794 28 8 -2.4871 -2.1058 5.4224 29 6 -0.1658 -2.0499 5.7102 30 1 -0.3634 0.5128 0.8905 31 1 -0.3633 0.5148 -0.8894 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6064 -1.7217 -1.2979 34 1 1.7644 -0.1579 -2.1388 35 1 2.4020 -1.0740 -4.7099 36 1 3.8387 -2.4806 0.0875 37 1 5.1904 -1.3250 -0.0138 38 1 3.9151 0.3406 1.2544 39 1 3.9336 -1.1878 2.1677 40 1 1.2774 0.8841 2.4076 41 1 1.5284 0.7854 5.0871 42 1 -0.1319 0.3271 4.6384 43 1 0.4307 -1.0497 8.0131 44 1 1.3866 0.3498 7.4650 45 1 -1.0362 0.8777 8.0422 46 1 -0.5451 1.3434 6.3981 47 1 -3.4534 0.7231 5.7996 48 1 -3.8332 -0.7604 6.7070 49 1 -3.2789 0.6939 7.5707 50 1 -0.0529 -2.4345 4.6965 51 1 -0.0154 -2.8615 6.4221 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942201390.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:41 Heat of formation + Delta-G solvation = -55.086637 kcal Electronic energy + Delta-G solvation = -30964.645516 eV Core-core repulsion = 26898.898751 eV Total energy + Delta-G solvation = -4065.746765 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 3.55 seconds Orbital eigenvalues (eV) -42.05474 -40.87949 -39.29487 -38.20433 -36.24316 -35.86925 -33.98504 -33.50416 -31.52508 -30.97516 -30.08143 -28.05183 -27.57729 -26.66342 -25.66249 -24.15247 -23.27924 -22.51090 -21.51642 -20.94254 -19.62881 -18.79766 -18.32994 -17.88390 -17.42460 -17.26297 -17.07926 -16.73042 -16.33280 -15.87137 -15.78103 -15.54193 -15.46749 -14.85504 -14.78582 -14.61561 -14.34838 -14.22022 -14.08003 -13.94082 -13.61029 -13.48151 -13.18570 -13.06691 -12.94495 -12.89382 -12.73503 -12.60788 -12.55831 -12.44437 -12.16720 -11.98939 -11.82803 -11.75101 -11.60517 -11.53863 -11.24831 -10.74029 -10.57417 -9.93649 -9.85683 -9.35889 -8.71259 -7.88079 -5.34405 1.40265 1.47100 1.48859 1.59835 1.70307 1.84629 2.11567 2.51322 2.86642 3.27182 3.41390 3.61126 3.72389 3.80670 3.88426 4.00282 4.04525 4.18222 4.19600 4.23349 4.34347 4.35949 4.38858 4.55161 4.57358 4.59001 4.67619 4.69652 4.73840 4.74671 4.83883 4.87961 4.91882 4.98619 5.02912 5.09726 5.14413 5.29390 5.30120 5.33324 5.49739 5.59052 5.62657 5.65747 5.72400 5.83965 6.26815 6.38328 6.67500 6.96638 7.13599 7.36828 7.83172 8.36536 9.18911 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.024406 B = 0.002438 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.986266 B =11479.873435 C =11879.054813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.106 4.106 3 H 0.078 0.922 4 C 0.189 3.811 5 N -0.610 5.610 6 C -0.262 4.262 7 H 0.069 0.931 8 C -0.051 4.051 9 N -0.936 5.936 10 Si 0.969 3.031 11 H -0.265 1.265 12 H -0.295 1.295 13 H -0.288 1.288 14 C 0.143 3.857 15 C -0.122 4.122 16 C 0.171 3.829 17 H 0.049 0.951 18 N -0.710 5.710 19 C 0.504 3.496 20 O -0.568 6.568 21 C 0.037 3.963 22 N -0.517 5.517 23 C 0.037 3.963 24 C 0.069 3.931 25 N -0.607 5.607 26 C 0.076 3.924 27 C 0.478 3.522 28 O -0.599 6.599 29 C 0.046 3.954 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.036 0.964 33 H -0.014 1.014 34 H 0.061 0.939 35 H 0.250 0.750 36 H 0.002 0.998 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.413 0.587 41 H 0.149 0.851 42 H 0.074 0.926 43 H 0.094 0.906 44 H 0.134 0.866 45 H 0.116 0.884 46 H 0.088 0.912 47 H 0.056 0.944 48 H 0.053 0.947 49 H 0.106 0.894 50 H 0.093 0.907 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.618 11.074 27.026 30.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.127 4.127 3 H 0.096 0.904 4 C 0.063 3.937 5 N -0.333 5.333 6 C -0.392 4.392 7 H 0.087 0.913 8 C -0.247 4.247 9 N -0.582 5.582 10 Si 0.797 3.203 11 H -0.189 1.189 12 H -0.222 1.222 13 H -0.214 1.214 14 C 0.017 3.983 15 C -0.162 4.162 16 C 0.066 3.934 17 H 0.067 0.933 18 N -0.362 5.362 19 C 0.291 3.709 20 O -0.446 6.446 21 C -0.093 4.093 22 N -0.240 5.240 23 C -0.090 4.090 24 C -0.054 4.054 25 N -0.340 5.340 26 C -0.066 4.066 27 C 0.266 3.734 28 O -0.480 6.480 29 C -0.085 4.085 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.055 0.945 33 H 0.005 0.995 34 H 0.080 0.920 35 H 0.059 0.941 36 H 0.020 0.980 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.249 0.751 41 H 0.167 0.833 42 H 0.092 0.908 43 H 0.113 0.887 44 H 0.152 0.848 45 H 0.134 0.866 46 H 0.106 0.894 47 H 0.075 0.925 48 H 0.072 0.928 49 H 0.124 0.876 50 H 0.111 0.889 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.433 9.698 26.734 29.394 hybrid contribution -0.711 0.399 -1.526 1.730 sum -8.144 10.097 25.208 28.350 Atomic orbital electron populations 1.21666 0.93994 1.01116 1.02178 1.21883 0.96113 1.00099 0.94618 0.90375 1.20582 0.82578 0.95400 0.95177 1.44378 1.02220 1.69834 1.16842 1.19564 0.98421 1.34658 0.86537 0.91324 1.25850 0.99473 1.00247 0.99083 1.70209 1.27367 1.41821 1.18842 0.85182 0.78152 0.78145 0.78800 1.18873 1.22220 1.21437 1.20985 0.96911 0.93749 0.86683 1.22150 0.95244 1.01235 0.97541 1.20568 0.93223 0.95771 0.83817 0.93258 1.45986 1.65846 1.15057 1.09312 1.21151 0.77525 0.87064 0.85148 1.90695 1.50715 1.18149 1.85036 1.22152 1.02561 0.95941 0.88690 1.62183 1.46491 1.12458 1.02886 1.22872 0.96919 0.98915 0.90311 1.22543 0.87150 0.93913 1.01793 1.47595 1.09404 1.21398 1.55563 1.21807 0.81436 1.00258 1.03127 1.21662 0.93011 0.81357 0.77386 1.90701 1.46444 1.60270 1.50586 1.22407 0.83958 0.96592 1.05575 0.90673 0.92528 0.94472 0.99543 0.92021 0.94084 0.97992 0.92291 0.91162 0.91961 0.75068 0.83320 0.90793 0.88747 0.84828 0.86641 0.89354 0.92548 0.92811 0.87554 0.88886 0.86332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.02 9.03 71.98 0.65 -3.37 16 2 C -0.11 -3.79 2.46 -10.72 -0.03 -3.82 16 3 H 0.08 2.66 8.14 -2.38 -0.02 2.64 16 4 C 0.19 9.15 4.59 86.36 0.40 9.55 16 5 N -0.61 -31.07 2.99 -699.09 -2.09 -33.17 16 6 C -0.26 -14.42 9.58 84.04 0.81 -13.61 16 7 H 0.07 3.67 7.89 -2.91 -0.02 3.65 16 8 C -0.05 -2.87 4.92 84.86 0.42 -2.45 16 9 N -0.94 -55.85 11.20 21.65 0.24 -55.61 16 10 Si 0.97 44.64 29.59 68.60 2.03 46.67 16 11 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 12 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 13 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 14 C 0.14 6.26 6.52 86.36 0.56 6.82 16 15 C -0.12 -4.28 5.65 30.67 0.17 -4.11 16 16 C 0.17 5.77 1.88 45.02 0.08 5.85 16 17 H 0.05 2.01 7.58 -2.39 -0.02 1.99 16 18 N -0.71 -17.14 4.36 -442.41 -1.93 -19.07 16 19 C 0.50 12.70 7.39 87.66 0.65 13.35 16 20 O -0.57 -19.88 14.18 -3.04 -0.04 -19.92 16 21 C 0.04 0.54 4.51 85.56 0.39 0.93 16 22 N -0.52 -8.23 4.75 -905.47 -4.30 -12.54 16 23 C 0.04 0.24 6.02 86.24 0.52 0.76 16 24 C 0.07 0.34 5.69 86.46 0.49 0.83 16 25 N -0.61 -8.67 3.04 -850.22 -2.58 -11.25 16 26 C 0.08 0.93 10.29 127.77 1.32 2.25 16 27 C 0.48 11.16 6.81 87.68 0.60 11.75 16 28 O -0.60 -20.01 16.33 -3.02 -0.05 -20.06 16 29 C 0.05 1.02 5.49 85.42 0.47 1.49 16 30 H 0.07 1.78 7.36 -2.39 -0.02 1.77 16 31 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 33 H -0.01 -0.73 8.14 -2.38 -0.02 -0.75 16 34 H 0.06 3.34 6.06 -2.39 -0.01 3.33 16 35 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 36 H 0.00 0.10 8.14 -2.38 -0.02 0.08 16 37 H 0.06 2.50 7.93 -2.39 -0.02 2.48 16 38 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 39 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.41 7.04 8.31 -92.71 -0.77 6.27 16 41 H 0.15 1.04 8.08 -2.39 -0.02 1.02 16 42 H 0.07 0.99 6.23 -2.39 -0.01 0.97 16 43 H 0.09 0.59 8.08 -2.39 -0.02 0.58 16 44 H 0.13 0.14 8.14 -2.38 -0.02 0.12 16 45 H 0.12 -0.05 7.98 -2.39 -0.02 -0.07 16 46 H 0.09 0.20 7.10 -2.39 -0.02 0.19 16 47 H 0.06 0.69 8.14 -2.39 -0.02 0.68 16 48 H 0.05 0.95 7.26 -2.39 -0.02 0.93 16 49 H 0.11 0.51 7.92 -2.39 -0.02 0.49 16 50 H 0.09 2.80 5.88 -2.39 -0.01 2.78 16 51 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -81.34 391.98 -1.08 -82.42 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 0.15 Total: 16.30 kcal Atomic # 6 Polarization: 18.73 SS G_CDS: 7.49 Total: 26.22 kcal Atomic # 7 Polarization: -120.97 SS G_CDS: -10.67 Total: -131.64 kcal Atomic # 8 Polarization: -39.88 SS G_CDS: -0.09 Total: -39.97 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -81.34 -1.08 -82.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942201390.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.335 kcal (2) G-P(sol) polarization free energy of solvation -81.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.56 seconds