Wall clock time and date at job start Tue Mar 31 2020 21:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.49673 * 2 1 4 4 C 1.53194 * 109.52289 * 239.92460 * 2 1 3 5 5 N 1.46923 * 108.77756 * 185.39898 * 4 2 1 6 6 C 1.36937 * 120.62905 * 233.58453 * 5 4 2 7 7 H 1.08003 * 119.99764 * 149.00905 * 6 5 4 8 8 C 1.38814 * 120.00216 * 329.01630 * 6 5 4 9 9 N 1.31616 * 119.99719 * 349.58653 * 8 6 5 10 10 Si 1.86798 * 119.99963 * 169.58583 * 8 6 5 11 11 H 1.48502 * 109.46966 * 89.99964 * 10 8 6 12 12 H 1.48505 * 109.46889 * 209.99678 * 10 8 6 13 13 H 1.48502 * 109.47419 * 329.99952 * 10 8 6 14 14 C 1.46929 * 118.73836 * 53.60422 * 5 4 2 15 15 C 1.53184 * 108.77427 * 306.39415 * 14 5 4 16 16 C 1.53035 * 109.49829 * 120.07196 * 2 1 3 17 17 H 1.08998 * 109.46402 * 61.33910 * 16 2 1 18 18 N 1.46504 * 109.45849 * 301.36611 * 16 2 1 19 19 C 1.34776 * 120.00024 * 155.00224 * 18 16 2 20 20 O 1.21286 * 119.99732 * 0.02562 * 19 18 16 21 21 C 1.50695 * 120.00007 * 179.97438 * 19 18 16 22 22 C 1.53048 * 109.45998 * 179.97438 * 21 19 18 23 23 C 1.53191 * 109.31038 * 181.37531 * 22 21 19 24 24 N 1.46928 * 108.77684 * 305.36489 * 23 22 21 25 25 C 1.34774 * 120.63247 * 233.58824 * 24 23 22 26 26 N 1.34781 * 119.99776 * 355.09245 * 25 24 23 27 27 O 1.21584 * 119.99947 * 174.81908 * 25 24 23 28 28 C 1.46929 * 118.73469 * 53.86428 * 24 23 22 29 29 C 1.53036 * 109.45416 * 300.06215 * 21 19 18 30 30 H 1.09002 * 109.46950 * 299.92975 * 1 2 3 31 31 H 1.08999 * 109.47293 * 59.92878 * 1 2 3 32 32 H 1.08996 * 109.47693 * 179.97438 * 1 2 3 33 33 H 1.09009 * 109.58614 * 305.18492 * 4 2 1 34 34 H 1.09005 * 109.58868 * 65.46409 * 4 2 1 35 35 H 0.96999 * 119.99899 * 180.02562 * 9 8 6 36 36 H 1.08999 * 109.58040 * 66.18627 * 14 5 4 37 37 H 1.09003 * 109.58311 * 186.46100 * 14 5 4 38 38 H 1.08999 * 109.49669 * 294.68067 * 15 14 5 39 39 H 1.09007 * 109.49400 * 174.58636 * 15 14 5 40 40 H 0.97001 * 119.99708 * 334.99945 * 18 16 2 41 41 H 1.09005 * 109.45753 * 60.02956 * 21 19 18 42 42 H 1.08997 * 109.49383 * 61.42523 * 22 21 19 43 43 H 1.08998 * 109.52256 * 301.34396 * 22 21 19 44 44 H 1.09004 * 109.58091 * 185.58385 * 23 22 21 45 45 H 1.08991 * 109.59082 * 65.15827 * 23 22 21 46 46 H 0.96999 * 119.99349 * 184.90110 * 26 25 24 47 47 H 0.96991 * 120.00266 * 4.90007 * 26 25 24 48 48 H 1.09001 * 109.58715 * 65.92777 * 28 24 23 49 49 H 1.09002 * 109.58180 * 186.35149 * 28 24 23 50 50 H 1.08998 * 109.49859 * 298.57436 * 29 21 19 51 51 H 1.08998 * 109.49650 * 58.66679 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0419 -0.7236 -1.2495 5 7 3.5052 -0.8283 -1.1691 6 6 4.2942 -0.3782 -2.1939 7 1 5.2796 0.0116 -1.9855 8 6 3.8274 -0.4227 -3.5004 9 7 2.7219 -1.0790 -3.7822 10 14 4.7682 0.4488 -4.8586 11 1 5.7652 -0.4819 -5.4460 12 1 3.8202 0.8890 -5.9136 13 1 5.4671 1.6322 -4.2960 14 6 4.1059 -1.4256 0.0314 15 6 3.5708 -0.6941 1.2664 16 6 2.0408 -0.7229 1.2484 17 1 1.6974 -1.7572 1.2352 18 7 1.5259 -0.0529 2.4453 19 6 1.3979 -0.7382 3.5987 20 8 1.7094 -1.9094 3.6459 21 6 0.8688 -0.0490 4.8299 22 6 0.8235 -1.0443 5.9917 23 6 0.2531 -0.3494 7.2321 24 7 1.0441 0.8588 7.5031 25 6 1.5909 1.0634 8.7177 26 7 1.3334 0.2066 9.7257 27 8 2.3205 2.0182 8.9029 28 6 1.2224 1.8426 6.4264 29 6 1.7862 1.1209 5.1931 30 1 -0.3633 0.5128 0.8906 31 1 -0.3634 0.5149 -0.8893 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6063 -1.7217 -1.2980 34 1 1.7621 -0.1592 -2.1391 35 1 2.3959 -1.1105 -4.6952 36 1 3.8386 -2.4808 0.0872 37 1 5.1903 -1.3253 -0.0141 38 1 3.9155 0.3399 1.2545 39 1 3.9334 -1.1886 2.1676 40 1 1.2772 0.8839 2.4075 41 1 -0.1360 0.3250 4.6332 42 1 1.8313 -1.4003 6.2052 43 1 0.1885 -1.8886 5.7234 44 1 0.3105 -1.0231 8.0871 45 1 -0.7856 -0.0732 7.0510 46 1 1.6683 0.3917 10.6170 47 1 0.8132 -0.5951 9.5599 48 1 0.2611 2.2939 6.1810 49 1 1.9195 2.6156 6.7497 50 1 2.7852 0.7448 5.4140 51 1 1.8361 1.8174 4.3562 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000944891629.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:21 Heat of formation + Delta-G solvation = -54.626147 kcal Electronic energy + Delta-G solvation = -30581.411196 eV Core-core repulsion = 26515.684399 eV Total energy + Delta-G solvation = -4065.726797 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 2.34 seconds Orbital eigenvalues (eV) -40.85260 -39.85290 -38.01185 -37.01165 -34.55154 -34.34502 -32.92720 -32.17514 -31.83503 -31.20794 -29.38238 -26.57249 -25.90478 -24.85057 -23.67084 -22.64896 -21.72369 -20.88327 -20.28843 -19.80887 -19.29140 -18.69462 -17.26214 -17.15196 -16.55697 -15.92889 -15.78036 -15.45960 -14.99525 -14.82827 -14.53123 -14.15347 -14.06516 -13.82732 -13.71390 -13.62799 -13.30322 -12.96895 -12.88781 -12.66923 -12.48507 -12.18543 -12.05359 -11.66074 -11.47832 -11.32216 -11.12880 -11.01809 -10.97675 -10.74890 -10.68735 -10.49292 -10.35106 -10.17095 -10.04422 -10.00581 -9.88190 -9.66521 -9.42069 -8.96968 -8.69095 -8.47972 -6.64136 -5.80123 -3.27467 2.41940 2.74445 2.86497 3.32770 3.36800 3.42786 3.44480 3.72247 4.25795 4.46141 4.47270 4.53752 4.64440 4.81827 4.93619 5.04816 5.16019 5.24370 5.31596 5.36129 5.40637 5.45126 5.49154 5.56332 5.61067 5.68262 5.79952 5.87427 5.97011 6.06947 6.07711 6.13560 6.24392 6.35062 6.40826 6.47055 6.50858 6.56046 6.59682 6.68639 6.79534 6.95169 6.99274 7.34525 7.47853 7.63217 7.73184 7.78631 8.26981 8.38954 8.46225 9.20915 9.82136 10.40371 11.28151 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.025703 B = 0.002232 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.112104 B =12543.919568 C =12818.747391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.123 4.123 3 H 0.066 0.934 4 C 0.181 3.819 5 N -0.593 5.593 6 C -0.251 4.251 7 H 0.064 0.936 8 C 0.003 3.997 9 N -0.905 5.905 10 Si 0.905 3.095 11 H -0.286 1.286 12 H -0.290 1.290 13 H -0.279 1.279 14 C 0.147 3.853 15 C -0.139 4.139 16 C 0.157 3.843 17 H 0.080 0.920 18 N -0.720 5.720 19 C 0.514 3.486 20 O -0.542 6.542 21 C -0.107 4.107 22 C -0.114 4.114 23 C 0.112 3.888 24 N -0.628 5.628 25 C 0.710 3.290 26 N -0.869 5.869 27 O -0.594 6.594 28 C 0.130 3.870 29 C -0.126 4.126 30 H 0.041 0.959 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.019 0.981 34 H 0.094 0.906 35 H 0.254 0.746 36 H 0.019 0.981 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.053 0.947 40 H 0.395 0.605 41 H 0.097 0.903 42 H 0.076 0.924 43 H 0.085 0.915 44 H 0.079 0.921 45 H 0.072 0.928 46 H 0.413 0.587 47 H 0.396 0.604 48 H 0.070 0.930 49 H 0.098 0.902 50 H 0.075 0.925 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.675 3.186 22.728 24.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.144 4.144 3 H 0.085 0.915 4 C 0.055 3.945 5 N -0.316 5.316 6 C -0.381 4.381 7 H 0.082 0.918 8 C -0.195 4.195 9 N -0.550 5.550 10 Si 0.734 3.266 11 H -0.213 1.213 12 H -0.216 1.216 13 H -0.205 1.205 14 C 0.020 3.980 15 C -0.179 4.179 16 C 0.054 3.946 17 H 0.099 0.901 18 N -0.369 5.369 19 C 0.299 3.701 20 O -0.420 6.420 21 C -0.129 4.129 22 C -0.153 4.153 23 C -0.012 4.012 24 N -0.367 5.367 25 C 0.409 3.591 26 N -0.439 5.439 27 O -0.472 6.472 28 C 0.007 3.993 29 C -0.165 4.165 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.038 0.962 34 H 0.112 0.888 35 H 0.064 0.936 36 H 0.037 0.963 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.228 0.772 41 H 0.115 0.885 42 H 0.094 0.906 43 H 0.104 0.896 44 H 0.098 0.902 45 H 0.091 0.909 46 H 0.245 0.755 47 H 0.227 0.773 48 H 0.088 0.912 49 H 0.117 0.883 50 H 0.094 0.906 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.049 2.991 22.518 24.452 hybrid contribution 0.136 0.417 -0.537 0.693 sum -8.913 3.408 21.981 23.963 Atomic orbital electron populations 1.21716 0.95970 1.01385 1.00518 1.22176 0.94630 1.00598 0.96954 0.91526 1.20826 0.83058 0.97047 0.93596 1.44059 1.01732 1.69367 1.16405 1.19174 0.99333 1.34290 0.85315 0.91810 1.25163 0.98062 0.98946 0.97359 1.69959 1.23151 1.43140 1.18743 0.86266 0.79093 0.79410 0.81803 1.21342 1.21581 1.20482 1.20882 0.96657 0.94261 0.86183 1.22374 0.94901 1.01248 0.99414 1.21052 0.93764 0.97125 0.82706 0.90144 1.46326 1.65712 1.14298 1.10599 1.20464 0.78095 0.87107 0.84410 1.90702 1.50022 1.16414 1.84821 1.21322 1.00946 0.96849 0.93740 1.21726 1.03382 0.97510 0.92676 1.21711 0.95162 0.86045 0.98237 1.47288 1.55370 1.23248 1.10766 1.15856 0.79942 0.82633 0.80639 1.43170 1.61792 1.27122 1.11838 1.90963 1.41066 1.32616 1.82603 1.21593 1.01650 0.90828 0.85221 1.22016 0.99645 0.96630 0.98208 0.93968 0.92627 0.93085 0.96246 0.88786 0.93575 0.96268 0.92612 0.92386 0.92811 0.77164 0.88474 0.90556 0.89646 0.90234 0.90931 0.75504 0.77342 0.91206 0.88343 0.90641 0.89922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.03 37.16 0.34 -1.71 16 2 C -0.12 -2.16 2.46 -90.50 -0.22 -2.38 16 3 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 4 C 0.18 4.17 4.54 -3.71 -0.02 4.15 16 5 N -0.59 -14.68 2.99 -172.31 -0.51 -15.20 16 6 C -0.25 -6.81 9.59 -15.06 -0.14 -6.95 16 7 H 0.06 1.70 7.85 -52.48 -0.41 1.29 16 8 C 0.00 0.09 5.06 -17.43 -0.09 0.00 16 9 N -0.91 -25.81 11.00 55.49 0.61 -25.20 16 10 Si 0.90 21.44 29.57 -169.99 -5.03 16.41 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 13 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 14 C 0.15 3.16 6.52 -3.71 -0.02 3.14 16 15 C -0.14 -2.51 5.65 -26.61 -0.15 -2.66 16 16 C 0.16 2.63 1.88 -67.89 -0.13 2.50 16 17 H 0.08 1.55 7.58 -51.93 -0.39 1.16 16 18 N -0.72 -9.25 4.25 -53.77 -0.23 -9.48 16 19 C 0.51 6.67 7.12 -10.99 -0.08 6.60 16 20 O -0.54 -9.32 15.64 5.55 0.09 -9.23 16 21 C -0.11 -0.92 2.48 -91.73 -0.23 -1.15 16 22 C -0.11 -0.92 4.65 -26.61 -0.12 -1.04 16 23 C 0.11 0.63 6.39 -3.71 -0.02 0.60 16 24 N -0.63 -5.06 2.97 -178.23 -0.53 -5.58 16 25 C 0.71 7.11 8.57 -86.92 -0.74 6.36 16 26 N -0.87 -5.08 8.78 27.63 0.24 -4.84 16 27 O -0.59 -8.59 16.60 5.29 0.09 -8.50 16 28 C 0.13 1.02 6.47 -3.49 -0.02 1.00 16 29 C -0.13 -1.03 5.28 -26.39 -0.14 -1.17 16 30 H 0.04 0.51 7.36 -51.93 -0.38 0.13 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.02 0.48 8.14 -51.92 -0.42 0.06 16 34 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 35 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 1.18 7.93 -51.93 -0.41 0.76 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.05 0.96 8.14 -51.92 -0.42 0.54 16 40 H 0.39 4.07 7.70 -40.82 -0.31 3.76 16 41 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.08 0.77 8.13 -51.93 -0.42 0.35 16 43 H 0.09 0.70 8.07 -51.93 -0.42 0.28 16 44 H 0.08 0.28 5.64 -51.93 -0.29 -0.01 16 45 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.41 1.98 8.93 -40.82 -0.36 1.61 16 47 H 0.40 1.26 6.32 -40.82 -0.26 1.00 16 48 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 49 H 0.10 0.94 7.00 -51.93 -0.36 0.57 16 50 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 51 H 0.08 0.58 7.52 -51.93 -0.39 0.19 16 LS Contribution 392.76 15.07 5.92 5.92 Total: -1.00 -34.67 392.76 -9.67 -44.35 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -8.52 Total: 4.08 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: -1.80 Total: 7.28 kcal Atomic # 7 Polarization: -59.89 SS G_CDS: -0.42 Total: -60.31 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: 0.17 Total: -17.73 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.67 -9.67 -44.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944891629.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.278 kcal (2) G-P(sol) polarization free energy of solvation -34.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.34 seconds