Wall clock time and date at job start Tue Mar 31 2020 21:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.49673 * 2 1 4 4 C 1.53194 * 109.52289 * 239.92460 * 2 1 3 5 5 N 1.46923 * 108.77756 * 185.39898 * 4 2 1 6 6 C 1.36937 * 120.62905 * 233.58453 * 5 4 2 7 7 H 1.08003 * 119.99764 * 149.00905 * 6 5 4 8 8 C 1.38814 * 120.00216 * 329.01630 * 6 5 4 9 9 N 1.31616 * 119.99719 * 349.58653 * 8 6 5 10 10 Si 1.86798 * 119.99963 * 169.58583 * 8 6 5 11 11 H 1.48502 * 109.46966 * 89.99964 * 10 8 6 12 12 H 1.48505 * 109.46889 * 209.99678 * 10 8 6 13 13 H 1.48502 * 109.47419 * 329.99952 * 10 8 6 14 14 C 1.46929 * 118.73836 * 53.60422 * 5 4 2 15 15 C 1.53184 * 108.77427 * 306.39415 * 14 5 4 16 16 C 1.53035 * 109.49829 * 120.07196 * 2 1 3 17 17 H 1.08998 * 109.46402 * 61.33910 * 16 2 1 18 18 N 1.46504 * 109.45849 * 301.36611 * 16 2 1 19 19 C 1.34776 * 120.00024 * 155.00224 * 18 16 2 20 20 O 1.21286 * 119.99732 * 0.02562 * 19 18 16 21 21 C 1.50695 * 120.00007 * 179.97438 * 19 18 16 22 22 C 1.53048 * 109.45998 * 179.97438 * 21 19 18 23 23 C 1.53191 * 109.31038 * 181.37531 * 22 21 19 24 24 N 1.46928 * 108.77684 * 305.36489 * 23 22 21 25 25 C 1.34774 * 120.63247 * 233.58824 * 24 23 22 26 26 N 1.34781 * 119.99776 * 355.09245 * 25 24 23 27 27 O 1.21584 * 119.99947 * 174.81908 * 25 24 23 28 28 C 1.46929 * 118.73469 * 53.86428 * 24 23 22 29 29 C 1.53036 * 109.45416 * 300.06215 * 21 19 18 30 30 H 1.09002 * 109.46950 * 299.92975 * 1 2 3 31 31 H 1.08999 * 109.47293 * 59.92878 * 1 2 3 32 32 H 1.08996 * 109.47693 * 179.97438 * 1 2 3 33 33 H 1.09009 * 109.58614 * 305.18492 * 4 2 1 34 34 H 1.09005 * 109.58868 * 65.46409 * 4 2 1 35 35 H 0.96999 * 119.99899 * 180.02562 * 9 8 6 36 36 H 1.08999 * 109.58040 * 66.18627 * 14 5 4 37 37 H 1.09003 * 109.58311 * 186.46100 * 14 5 4 38 38 H 1.08999 * 109.49669 * 294.68067 * 15 14 5 39 39 H 1.09007 * 109.49400 * 174.58636 * 15 14 5 40 40 H 0.97001 * 119.99708 * 334.99945 * 18 16 2 41 41 H 1.09005 * 109.45753 * 60.02956 * 21 19 18 42 42 H 1.08997 * 109.49383 * 61.42523 * 22 21 19 43 43 H 1.08998 * 109.52256 * 301.34396 * 22 21 19 44 44 H 1.09004 * 109.58091 * 185.58385 * 23 22 21 45 45 H 1.08991 * 109.59082 * 65.15827 * 23 22 21 46 46 H 0.96999 * 119.99349 * 184.90110 * 26 25 24 47 47 H 0.96991 * 120.00266 * 4.90007 * 26 25 24 48 48 H 1.09001 * 109.58715 * 65.92777 * 28 24 23 49 49 H 1.09002 * 109.58180 * 186.35149 * 28 24 23 50 50 H 1.08998 * 109.49859 * 298.57436 * 29 21 19 51 51 H 1.08998 * 109.49650 * 58.66679 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0419 -0.7236 -1.2495 5 7 3.5052 -0.8283 -1.1691 6 6 4.2942 -0.3782 -2.1939 7 1 5.2796 0.0116 -1.9855 8 6 3.8274 -0.4227 -3.5004 9 7 2.7219 -1.0790 -3.7822 10 14 4.7682 0.4488 -4.8586 11 1 5.7652 -0.4819 -5.4460 12 1 3.8202 0.8890 -5.9136 13 1 5.4671 1.6322 -4.2960 14 6 4.1059 -1.4256 0.0314 15 6 3.5708 -0.6941 1.2664 16 6 2.0408 -0.7229 1.2484 17 1 1.6974 -1.7572 1.2352 18 7 1.5259 -0.0529 2.4453 19 6 1.3979 -0.7382 3.5987 20 8 1.7094 -1.9094 3.6459 21 6 0.8688 -0.0490 4.8299 22 6 0.8235 -1.0443 5.9917 23 6 0.2531 -0.3494 7.2321 24 7 1.0441 0.8588 7.5031 25 6 1.5909 1.0634 8.7177 26 7 1.3334 0.2066 9.7257 27 8 2.3205 2.0182 8.9029 28 6 1.2224 1.8426 6.4264 29 6 1.7862 1.1209 5.1931 30 1 -0.3633 0.5128 0.8906 31 1 -0.3634 0.5149 -0.8893 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6063 -1.7217 -1.2980 34 1 1.7621 -0.1592 -2.1391 35 1 2.3959 -1.1105 -4.6952 36 1 3.8386 -2.4808 0.0872 37 1 5.1903 -1.3253 -0.0141 38 1 3.9155 0.3399 1.2545 39 1 3.9334 -1.1886 2.1676 40 1 1.2772 0.8839 2.4075 41 1 -0.1360 0.3250 4.6332 42 1 1.8313 -1.4003 6.2052 43 1 0.1885 -1.8886 5.7234 44 1 0.3105 -1.0231 8.0871 45 1 -0.7856 -0.0732 7.0510 46 1 1.6683 0.3917 10.6170 47 1 0.8132 -0.5951 9.5599 48 1 0.2611 2.2939 6.1810 49 1 1.9195 2.6156 6.7497 50 1 2.7852 0.7448 5.4140 51 1 1.8361 1.8174 4.3562 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000944891629.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:17 Heat of formation + Delta-G solvation = -80.089923 kcal Electronic energy + Delta-G solvation = -30582.515388 eV Core-core repulsion = 26515.684399 eV Total energy + Delta-G solvation = -4066.830989 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 3.60 seconds Orbital eigenvalues (eV) -41.64567 -40.88444 -39.36687 -37.96242 -36.13020 -35.07866 -34.04571 -33.51251 -33.28348 -31.87280 -31.05645 -27.58011 -27.52830 -26.33866 -24.34354 -23.97923 -22.76237 -22.49733 -21.33119 -20.85195 -20.39539 -19.41078 -18.81292 -17.92598 -17.81067 -17.23551 -16.72447 -16.47084 -16.25057 -15.77495 -15.58114 -15.52519 -15.29108 -14.97847 -14.90401 -14.64114 -14.60354 -14.35651 -14.15606 -13.77590 -13.48671 -13.27773 -13.14006 -12.98079 -12.89001 -12.84034 -12.54593 -12.46955 -12.25602 -12.02587 -11.85265 -11.79649 -11.72219 -11.64237 -11.53954 -11.29241 -11.22708 -10.70323 -10.67533 -10.57510 -9.93482 -9.57868 -8.65894 -7.87525 -5.38778 1.47516 1.48040 1.57896 1.70512 1.85019 2.12916 2.27843 2.50238 3.25010 3.28647 3.58835 3.65369 3.74567 3.81630 3.83735 4.06124 4.06632 4.23181 4.27146 4.35090 4.36777 4.43606 4.57814 4.65032 4.71555 4.75599 4.76039 4.79598 4.86431 4.89463 4.95940 4.99313 4.99839 5.09591 5.15663 5.20001 5.30809 5.33621 5.37035 5.52176 5.53070 5.61597 5.65276 5.77180 5.88119 6.03654 6.40671 6.67600 6.92120 7.15116 7.36324 7.63116 7.82816 8.36675 9.18474 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.025703 B = 0.002232 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.112104 B =12543.919568 C =12818.747391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.108 4.108 3 H 0.073 0.927 4 C 0.188 3.812 5 N -0.611 5.611 6 C -0.264 4.264 7 H 0.065 0.935 8 C -0.048 4.048 9 N -0.935 5.935 10 Si 0.970 3.030 11 H -0.287 1.287 12 H -0.290 1.290 13 H -0.269 1.269 14 C 0.144 3.856 15 C -0.125 4.125 16 C 0.171 3.829 17 H 0.054 0.946 18 N -0.708 5.708 19 C 0.512 3.488 20 O -0.587 6.587 21 C -0.096 4.096 22 C -0.112 4.112 23 C 0.116 3.884 24 N -0.628 5.628 25 C 0.700 3.300 26 N -0.851 5.851 27 O -0.646 6.646 28 C 0.131 3.869 29 C -0.119 4.119 30 H 0.079 0.921 31 H 0.054 0.946 32 H 0.041 0.959 33 H -0.011 1.011 34 H 0.064 0.936 35 H 0.251 0.749 36 H 0.004 0.996 37 H 0.055 0.945 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.412 0.588 41 H 0.133 0.867 42 H 0.048 0.952 43 H 0.086 0.914 44 H 0.101 0.899 45 H 0.100 0.900 46 H 0.419 0.581 47 H 0.411 0.589 48 H 0.099 0.901 49 H 0.077 0.923 50 H 0.048 0.952 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.320 4.688 24.384 27.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.128 4.128 3 H 0.091 0.909 4 C 0.062 3.938 5 N -0.334 5.334 6 C -0.394 4.394 7 H 0.082 0.918 8 C -0.244 4.244 9 N -0.581 5.581 10 Si 0.798 3.202 11 H -0.214 1.214 12 H -0.216 1.216 13 H -0.194 1.194 14 C 0.018 3.982 15 C -0.165 4.165 16 C 0.065 3.935 17 H 0.072 0.928 18 N -0.359 5.359 19 C 0.300 3.700 20 O -0.467 6.467 21 C -0.117 4.117 22 C -0.151 4.151 23 C -0.007 4.007 24 N -0.365 5.365 25 C 0.399 3.601 26 N -0.422 5.422 27 O -0.529 6.529 28 C 0.008 3.992 29 C -0.158 4.158 30 H 0.098 0.902 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.007 0.993 34 H 0.083 0.917 35 H 0.060 0.940 36 H 0.022 0.978 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.250 0.750 41 H 0.151 0.849 42 H 0.067 0.933 43 H 0.104 0.896 44 H 0.119 0.881 45 H 0.119 0.881 46 H 0.252 0.748 47 H 0.244 0.756 48 H 0.117 0.883 49 H 0.096 0.904 50 H 0.067 0.933 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.731 4.483 24.214 26.862 hybrid contribution 0.684 -0.165 -1.032 1.249 sum -10.047 4.318 23.183 25.632 Atomic orbital electron populations 1.21665 0.93413 1.01432 1.02360 1.21893 0.96640 0.99797 0.94492 0.90906 1.20636 0.82376 0.95578 0.95258 1.44325 1.02368 1.69819 1.16862 1.19487 0.99678 1.34024 0.86232 0.91757 1.25919 0.99065 0.99912 0.99468 1.70133 1.24583 1.44536 1.18850 0.85237 0.77674 0.78452 0.78823 1.21388 1.21636 1.19371 1.20960 0.96731 0.93813 0.86708 1.22172 0.95932 1.00946 0.97426 1.20579 0.92737 0.96050 0.84095 0.92787 1.46056 1.65396 1.15028 1.09381 1.21269 0.76917 0.86601 0.85205 1.90694 1.51807 1.18677 1.85500 1.21347 1.02374 0.96574 0.91370 1.21699 1.02091 0.97701 0.93633 1.21873 0.95737 0.85236 0.97820 1.47374 1.55075 1.23891 1.10202 1.16147 0.79703 0.82531 0.81684 1.43003 1.61125 1.26812 1.11305 1.90927 1.43405 1.34953 1.83591 1.21621 1.02560 0.90376 0.84684 1.21956 0.98088 0.96624 0.99086 0.90201 0.92668 0.93964 0.99255 0.91748 0.93981 0.97765 0.92673 0.91646 0.92532 0.75049 0.84929 0.93275 0.89577 0.88095 0.88146 0.74848 0.75586 0.88327 0.90404 0.93347 0.88290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.64 9.03 71.98 0.65 -2.99 16 2 C -0.11 -3.71 2.46 -10.72 -0.03 -3.73 16 3 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 4 C 0.19 8.90 4.54 86.36 0.39 9.30 16 5 N -0.61 -31.00 2.99 -699.08 -2.09 -33.09 16 6 C -0.26 -14.55 9.59 84.03 0.81 -13.74 16 7 H 0.06 3.46 7.85 -2.91 -0.02 3.44 16 8 C -0.05 -2.68 5.06 84.86 0.43 -2.25 16 9 N -0.94 -54.87 11.00 21.65 0.24 -54.63 16 10 Si 0.97 44.53 29.57 68.60 2.03 46.56 16 11 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 12 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 13 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 14 C 0.14 6.35 6.52 86.36 0.56 6.91 16 15 C -0.12 -4.47 5.65 30.67 0.17 -4.29 16 16 C 0.17 5.59 1.88 45.02 0.08 5.67 16 17 H 0.05 2.10 7.58 -2.39 -0.02 2.09 16 18 N -0.71 -16.50 4.25 -442.41 -1.88 -18.38 16 19 C 0.51 12.30 7.12 87.66 0.62 12.92 16 20 O -0.59 -19.85 15.64 -3.05 -0.05 -19.90 16 21 C -0.10 -1.35 2.48 -11.51 -0.03 -1.37 16 22 C -0.11 -1.53 4.65 30.67 0.14 -1.39 16 23 C 0.12 0.87 6.39 86.36 0.55 1.42 16 24 N -0.63 -8.54 2.97 -836.07 -2.48 -11.02 16 25 C 0.70 13.00 8.57 179.05 1.53 14.54 16 26 N -0.85 -8.22 8.78 -184.74 -1.62 -9.84 16 27 O -0.65 -18.57 16.60 -3.98 -0.07 -18.64 16 28 C 0.13 1.71 6.47 86.51 0.56 2.27 16 29 C -0.12 -1.63 5.28 30.81 0.16 -1.47 16 30 H 0.08 1.63 7.36 -2.39 -0.02 1.61 16 31 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 33 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 34 H 0.06 3.43 6.07 -2.38 -0.01 3.42 16 35 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 36 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 37 H 0.05 2.38 7.93 -2.39 -0.02 2.36 16 38 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 40 H 0.41 6.89 7.70 -92.71 -0.71 6.17 16 41 H 0.13 1.05 8.14 -2.38 -0.02 1.03 16 42 H 0.05 0.95 8.13 -2.39 -0.02 0.93 16 43 H 0.09 1.20 8.07 -2.39 -0.02 1.18 16 44 H 0.10 0.33 5.64 -2.38 -0.01 0.32 16 45 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 46 H 0.42 3.32 8.93 -92.71 -0.83 2.49 16 47 H 0.41 1.40 6.32 -92.72 -0.59 0.82 16 48 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 49 H 0.08 1.40 7.00 -2.39 -0.02 1.39 16 50 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 51 H 0.10 1.04 7.52 -2.39 -0.02 1.02 16 Total: -1.00 -79.95 392.76 -0.47 -80.42 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -1.17 Total: 16.73 kcal Atomic # 6 Polarization: 15.17 SS G_CDS: 6.62 Total: 21.79 kcal Atomic # 7 Polarization: -119.13 SS G_CDS: -7.83 Total: -126.96 kcal Atomic # 8 Polarization: -38.42 SS G_CDS: -0.11 Total: -38.54 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -79.95 -0.47 -80.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944891629.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.327 kcal (2) G-P(sol) polarization free energy of solvation -79.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.61 seconds