Wall clock time and date at job start Tue Mar 31 2020 21:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.49786 * 2 1 4 4 C 1.53186 * 109.50105 * 239.93174 * 2 1 3 5 5 N 1.46924 * 108.77825 * 185.38169 * 4 2 1 6 6 C 1.36940 * 120.63064 * 233.58217 * 5 4 2 7 7 H 1.08001 * 119.99562 * 30.99978 * 6 5 4 8 8 C 1.38809 * 119.99936 * 210.99781 * 6 5 4 9 9 N 1.31616 * 120.00489 * 10.42961 * 8 6 5 10 10 Si 1.86804 * 119.99623 * 190.42426 * 8 6 5 11 11 H 1.48500 * 109.47375 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.46801 * 120.00363 * 10 8 6 13 13 H 1.48501 * 109.47000 * 239.99975 * 10 8 6 14 14 C 1.46923 * 118.73956 * 53.60584 * 5 4 2 15 15 C 1.53188 * 108.77696 * 306.39390 * 14 5 4 16 16 C 1.53042 * 109.31397 * 54.63474 * 15 14 5 17 17 H 1.08999 * 109.45010 * 178.62536 * 16 15 14 18 18 N 1.46496 * 109.46091 * 58.65541 * 16 15 14 19 19 C 1.34774 * 120.00066 * 84.93103 * 18 16 15 20 20 O 1.21286 * 119.99970 * 0.02562 * 19 18 16 21 21 C 1.50705 * 120.00141 * 179.97438 * 19 18 16 22 22 C 1.53040 * 109.46084 * 300.07284 * 21 19 18 23 23 C 1.53193 * 109.31058 * 178.61334 * 22 21 19 24 24 N 1.46928 * 108.77777 * 54.63301 * 23 22 21 25 25 C 1.34773 * 120.62798 * 126.36691 * 24 23 22 26 26 N 1.34772 * 120.00212 * 5.21244 * 25 24 23 27 27 O 1.21593 * 119.99840 * 185.21201 * 25 24 23 28 28 C 1.46929 * 118.73979 * 306.39539 * 24 23 22 29 29 C 1.53045 * 109.45917 * 180.02562 * 21 19 18 30 30 H 1.09003 * 109.47054 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47220 * 300.06909 * 1 2 3 32 32 H 1.08993 * 109.47010 * 60.06812 * 1 2 3 33 33 H 1.08999 * 109.58632 * 65.58981 * 4 2 1 34 34 H 1.08999 * 109.58539 * 305.16951 * 4 2 1 35 35 H 0.96998 * 120.00525 * 179.97438 * 9 8 6 36 36 H 1.09007 * 109.58821 * 66.18258 * 14 5 4 37 37 H 1.09004 * 109.59008 * 186.60258 * 14 5 4 38 38 H 1.09001 * 109.50017 * 174.58439 * 15 14 5 39 39 H 1.08998 * 109.49672 * 294.68496 * 15 14 5 40 40 H 0.97004 * 120.00259 * 264.93604 * 18 16 15 41 41 H 1.09003 * 109.45792 * 60.03064 * 21 19 18 42 42 H 1.09002 * 109.49466 * 298.56130 * 22 21 19 43 43 H 1.08991 * 109.49806 * 58.66445 * 22 21 19 44 44 H 1.09004 * 109.58521 * 294.84788 * 23 22 21 45 45 H 1.08997 * 109.58439 * 174.42125 * 23 22 21 46 46 H 0.97004 * 119.99886 * 354.81682 * 26 25 24 47 47 H 0.96997 * 120.00099 * 174.81388 * 26 25 24 48 48 H 1.09006 * 109.58072 * 293.82085 * 28 24 23 49 49 H 1.09000 * 109.58858 * 173.39431 * 28 24 23 50 50 H 1.08997 * 109.49470 * 301.33754 * 29 21 19 51 51 H 1.08993 * 109.49444 * 61.40452 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7235 -1.2497 5 7 3.5047 -0.8281 -1.1700 6 6 4.2932 -0.3780 -2.1952 7 1 3.9693 0.4568 -2.7990 8 6 5.5087 -0.9946 -2.4581 9 7 5.8124 -2.1301 -1.8660 10 14 6.7134 -0.2127 -3.6526 11 1 6.1386 1.0512 -4.1793 12 1 7.9886 0.0790 -2.9496 13 1 6.9711 -1.1467 -4.7781 14 6 4.1060 -1.4254 0.0301 15 6 3.5715 -0.6940 1.2655 16 6 2.0414 -0.7229 1.2483 17 1 1.6590 -0.2243 2.1389 18 7 1.5796 -2.1130 1.2308 19 6 1.4522 -2.7953 2.3861 20 8 1.7194 -2.2583 3.4402 21 6 0.9765 -4.2252 2.3682 22 6 -0.4186 -4.2907 1.7425 23 6 -0.8843 -5.7494 1.6944 24 7 -0.8023 -6.3168 3.0472 25 6 -1.8745 -6.9090 3.6094 26 7 -3.0034 -7.0788 2.8931 27 8 -1.8234 -7.2900 4.7630 28 6 0.4705 -6.2260 3.7755 29 6 0.9204 -4.7618 3.8004 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5149 0.8894 32 1 -0.3633 0.5127 -0.8905 33 1 1.7633 -0.1578 -2.1389 34 1 1.6057 -1.7215 -1.2980 35 1 6.6616 -2.5612 -2.0500 36 1 3.8388 -2.4807 0.0862 37 1 5.1902 -1.3228 -0.0146 38 1 3.9345 -1.1886 2.1665 39 1 3.9160 0.3400 1.2535 40 1 1.3656 -2.5425 0.3878 41 1 1.6668 -4.8302 1.7802 42 1 -1.1148 -3.7062 2.3439 43 1 -0.3829 -3.8867 0.7308 44 1 -0.2414 -6.3161 1.0208 45 1 -1.9147 -5.7925 1.3418 46 1 -3.0708 -6.7087 1.9990 47 1 -3.7485 -7.5712 3.2716 48 1 1.2238 -6.8316 3.2716 49 1 0.3338 -6.5836 4.7961 50 1 1.9093 -4.6931 4.2536 51 1 0.2117 -4.1724 4.3821 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000944891631.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:32 Heat of formation + Delta-G solvation = -76.304712 kcal Electronic energy + Delta-G solvation = -31183.408541 eV Core-core repulsion = 27116.741691 eV Total energy + Delta-G solvation = -4066.666850 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 5.25 seconds Orbital eigenvalues (eV) -41.69526 -40.96423 -39.37379 -37.94747 -35.95939 -35.02317 -34.11392 -33.35743 -32.83364 -31.91498 -31.47862 -27.53933 -27.35197 -26.50909 -24.30447 -23.90043 -23.07930 -22.62126 -21.44271 -20.46613 -20.05303 -19.42563 -18.66936 -18.13602 -17.84331 -16.88658 -16.65285 -16.45739 -16.27336 -15.76622 -15.67787 -15.48351 -15.32524 -15.22940 -14.77365 -14.70083 -14.57030 -14.36855 -14.04793 -13.81304 -13.47287 -13.35661 -13.14116 -12.93568 -12.85173 -12.68128 -12.53064 -12.34638 -12.27536 -12.13585 -11.91944 -11.81594 -11.68292 -11.59684 -11.43844 -11.29861 -11.07756 -10.71387 -10.67344 -10.52880 -9.91362 -9.59271 -8.58157 -7.83718 -5.33852 1.46448 1.49610 1.58271 1.72342 1.83379 2.12981 2.33098 2.52038 3.25418 3.32385 3.60302 3.70228 3.73638 3.79834 3.87333 4.07404 4.12405 4.16354 4.32154 4.32838 4.44457 4.45400 4.59223 4.63893 4.70134 4.73025 4.80741 4.81757 4.85170 4.87119 4.97799 5.03933 5.05650 5.12415 5.15057 5.23917 5.30314 5.35085 5.47371 5.50152 5.56456 5.65454 5.68910 5.79954 5.88199 6.04205 6.44007 6.67683 6.93461 7.18969 7.35737 7.63286 7.89355 8.40590 9.20946 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.017660 B = 0.002679 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.101954 B =10447.528634 C =10762.832811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.107 4.107 3 H 0.070 0.930 4 C 0.151 3.849 5 N -0.608 5.608 6 C -0.258 4.258 7 H 0.066 0.934 8 C -0.047 4.047 9 N -0.932 5.932 10 Si 0.962 3.038 11 H -0.267 1.267 12 H -0.296 1.296 13 H -0.291 1.291 14 C 0.191 3.809 15 C -0.145 4.145 16 C 0.168 3.832 17 H 0.069 0.931 18 N -0.702 5.702 19 C 0.514 3.486 20 O -0.588 6.588 21 C -0.101 4.101 22 C -0.120 4.120 23 C 0.112 3.888 24 N -0.627 5.627 25 C 0.701 3.299 26 N -0.849 5.849 27 O -0.647 6.647 28 C 0.132 3.868 29 C -0.104 4.104 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.029 0.971 35 H 0.248 0.752 36 H 0.006 0.994 37 H 0.045 0.955 38 H 0.044 0.956 39 H 0.054 0.946 40 H 0.407 0.593 41 H 0.114 0.886 42 H 0.065 0.935 43 H 0.104 0.896 44 H 0.094 0.906 45 H 0.111 0.889 46 H 0.412 0.588 47 H 0.419 0.581 48 H 0.086 0.914 49 H 0.078 0.922 50 H 0.072 0.928 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.312 -6.731 3.115 19.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.128 4.128 3 H 0.088 0.912 4 C 0.026 3.974 5 N -0.331 5.331 6 C -0.388 4.388 7 H 0.083 0.917 8 C -0.243 4.243 9 N -0.578 5.578 10 Si 0.791 3.209 11 H -0.191 1.191 12 H -0.223 1.223 13 H -0.218 1.218 14 C 0.065 3.935 15 C -0.185 4.185 16 C 0.063 3.937 17 H 0.087 0.913 18 N -0.353 5.353 19 C 0.302 3.698 20 O -0.468 6.468 21 C -0.122 4.122 22 C -0.158 4.158 23 C -0.010 4.010 24 N -0.364 5.364 25 C 0.401 3.599 26 N -0.420 5.420 27 O -0.530 6.530 28 C 0.009 3.991 29 C -0.143 4.143 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.047 0.953 35 H 0.057 0.943 36 H 0.024 0.976 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.245 0.755 41 H 0.132 0.868 42 H 0.084 0.916 43 H 0.122 0.878 44 H 0.112 0.888 45 H 0.129 0.871 46 H 0.245 0.755 47 H 0.252 0.748 48 H 0.105 0.895 49 H 0.096 0.904 50 H 0.090 0.910 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.807 -6.603 4.516 19.521 hybrid contribution 1.040 0.281 -0.922 1.418 sum -16.767 -6.322 3.594 18.276 Atomic orbital electron populations 1.21683 0.92561 1.02592 1.02132 1.21795 0.97025 0.99427 0.94514 0.91181 1.21079 0.83324 0.97184 0.95807 1.44236 1.01117 1.71605 1.16171 1.19501 1.00957 1.09470 1.08884 0.91665 1.25812 1.01691 0.96119 1.00665 1.70119 1.23262 1.17540 1.46910 0.85278 0.78874 0.78133 0.78574 1.19116 1.22341 1.21830 1.20390 0.97058 0.92575 0.83513 1.22414 0.96837 1.00662 0.98582 1.20667 0.92608 0.82163 0.98246 0.91259 1.46016 1.66599 1.13480 1.09211 1.21101 0.76384 0.89163 0.83143 1.90661 1.52505 1.71353 1.32313 1.21334 0.99985 0.91694 0.99228 1.21919 0.93576 0.97808 1.02523 1.21910 1.04108 0.92762 0.82258 1.47336 1.10538 1.60496 1.18037 1.16118 0.81400 0.78475 0.83933 1.42958 1.16010 1.62074 1.20940 1.90924 1.84095 1.59517 1.18446 1.21462 0.84026 0.95600 0.98023 1.21607 1.02049 0.95533 0.95136 0.91619 0.92597 0.91441 0.92458 0.95288 0.94311 0.97609 0.93616 0.93770 0.92692 0.75535 0.86807 0.91605 0.87810 0.88783 0.87132 0.75471 0.74765 0.89546 0.90390 0.90971 0.92871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 9.06 71.98 0.65 -2.09 16 2 C -0.11 -3.09 2.67 -10.72 -0.03 -3.12 16 3 H 0.07 2.19 8.14 -2.39 -0.02 2.18 16 4 C 0.15 5.28 5.50 86.36 0.48 5.76 16 5 N -0.61 -28.00 2.99 -699.12 -2.09 -30.09 16 6 C -0.26 -13.39 9.59 84.03 0.81 -12.58 16 7 H 0.07 3.31 7.85 -2.91 -0.02 3.29 16 8 C -0.05 -2.54 5.06 84.86 0.43 -2.11 16 9 N -0.93 -53.02 11.01 21.65 0.24 -52.78 16 10 Si 0.96 43.60 29.57 68.60 2.03 45.63 16 11 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 12 H -0.30 -13.64 7.11 99.48 0.71 -12.94 16 13 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 14 C 0.19 8.81 5.00 86.36 0.43 9.24 16 15 C -0.14 -5.65 5.77 30.67 0.18 -5.48 16 16 C 0.17 5.32 2.21 45.02 0.10 5.42 16 17 H 0.07 2.28 7.58 -2.39 -0.02 2.26 16 18 N -0.70 -19.05 3.48 -442.40 -1.54 -20.59 16 19 C 0.51 14.46 7.12 87.66 0.62 15.08 16 20 O -0.59 -21.55 15.64 -3.05 -0.05 -21.60 16 21 C -0.10 -1.99 2.49 -11.51 -0.03 -2.02 16 22 C -0.12 -1.53 5.27 30.67 0.16 -1.37 16 23 C 0.11 1.04 6.39 86.36 0.55 1.59 16 24 N -0.63 -10.47 2.97 -836.89 -2.49 -12.95 16 25 C 0.70 14.35 8.57 179.06 1.53 15.88 16 26 N -0.85 -8.92 8.78 -184.75 -1.62 -10.54 16 27 O -0.65 -19.96 16.60 -4.01 -0.07 -20.03 16 28 C 0.13 2.56 6.44 86.36 0.56 3.11 16 29 C -0.10 -2.29 4.65 30.67 0.14 -2.15 16 30 H 0.06 1.18 7.54 -2.39 -0.02 1.16 16 31 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.06 1.99 7.93 -2.39 -0.02 1.97 16 34 H 0.03 0.94 6.64 -2.39 -0.02 0.92 16 35 H 0.25 13.78 8.31 -92.71 -0.77 13.01 16 36 H 0.01 0.28 7.74 -2.38 -0.02 0.26 16 37 H 0.05 2.50 6.06 -2.38 -0.01 2.48 16 38 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.41 9.80 6.13 -92.71 -0.57 9.23 16 41 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.10 0.95 7.52 -2.39 -0.02 0.94 16 44 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.11 0.36 5.64 -2.39 -0.01 0.34 16 46 H 0.41 1.58 6.32 -92.71 -0.59 0.99 16 47 H 0.42 3.62 8.93 -92.71 -0.83 2.79 16 48 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 49 H 0.08 1.84 7.00 -2.39 -0.02 1.82 16 50 H 0.07 1.75 8.07 -2.39 -0.02 1.73 16 51 H 0.05 1.38 8.13 -2.39 -0.02 1.36 16 Total: -1.00 -75.96 388.80 -0.02 -75.98 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: -1.02 Total: 21.80 kcal Atomic # 6 Polarization: 18.59 SS G_CDS: 6.58 Total: 25.17 kcal Atomic # 7 Polarization: -119.46 SS G_CDS: -7.50 Total: -126.96 kcal Atomic # 8 Polarization: -41.51 SS G_CDS: -0.11 Total: -41.63 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -75.96 -0.02 -75.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944891631.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.323 kcal (2) G-P(sol) polarization free energy of solvation -75.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.25 seconds