Wall clock time and date at job start Tue Mar 31 2020 21:39:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09005 * 109.58683 * 2 1
4 4 C 1.53190 * 109.70441 * 239.64647 * 2 1 3
5 5 C 1.53041 * 109.31007 * 294.77536 * 4 2 1
6 6 H 1.09000 * 109.46026 * 58.65743 * 5 4 2
7 7 N 1.46507 * 109.45812 * 178.61063 * 5 4 2
8 8 C 1.34782 * 119.99577 * 204.99783 * 7 5 4
9 9 O 1.21273 * 120.00479 * 0.02562 * 8 7 5
10 10 C 1.50706 * 119.99242 * 180.02562 * 8 7 5
11 11 N 1.46904 * 109.46639 * 180.02562 * 10 8 7
12 12 C 1.47189 * 110.99758 * 188.94104 * 11 10 8
13 13 C 1.52967 * 108.74115 * 167.64422 * 12 11 10
14 14 N 1.46009 * 110.04577 * 50.27860 * 13 12 11
15 15 C 1.46494 * 118.53975 * 161.85677 * 14 13 12
16 16 C 1.33723 * 122.92362 * 341.83655 * 14 13 12
17 17 O 1.21280 * 118.62059 * 181.68761 * 16 14 13
18 18 C 1.46901 * 111.00220 * 66.04509 * 11 10 8
19 19 C 1.53031 * 109.53915 * 298.63514 * 5 4 2
20 20 C 1.53190 * 109.31433 * 61.36569 * 19 5 4
21 21 N 1.46919 * 109.58972 * 120.28169 * 2 1 3
22 22 C 1.36933 * 120.63387 * 246.04550 * 21 2 1
23 23 H 1.07996 * 120.00524 * 331.86970 * 22 21 2
24 24 C 1.38815 * 119.99989 * 151.86281 * 22 21 2
25 25 N 1.31621 * 119.99984 * 343.18547 * 24 22 21
26 26 Si 1.86800 * 120.00122 * 163.18226 * 24 22 21
27 27 H 1.48504 * 109.47115 * 90.00059 * 26 24 22
28 28 H 1.48500 * 109.47480 * 210.00260 * 26 24 22
29 29 H 1.48499 * 109.47007 * 330.00291 * 26 24 22
30 30 H 1.08998 * 109.46979 * 299.71778 * 1 2 3
31 31 H 1.09002 * 109.47072 * 59.71347 * 1 2 3
32 32 H 1.08997 * 109.46957 * 179.71689 * 1 2 3
33 33 H 1.09004 * 109.50146 * 54.72920 * 4 2 1
34 34 H 1.08996 * 109.50055 * 174.79691 * 4 2 1
35 35 H 0.96993 * 119.99751 * 25.00760 * 7 5 4
36 36 H 1.09002 * 109.46918 * 300.00142 * 10 8 7
37 37 H 1.08998 * 109.47195 * 60.00201 * 10 8 7
38 38 H 1.08998 * 109.58840 * 287.40528 * 12 11 10
39 39 H 1.08995 * 109.59590 * 47.85641 * 12 11 10
40 40 H 1.08996 * 109.37991 * 290.10086 * 13 12 11
41 41 H 1.08998 * 109.27715 * 170.38880 * 13 12 11
42 42 H 1.09003 * 109.47505 * 179.97438 * 15 14 13
43 43 H 1.09001 * 109.47336 * 299.97815 * 15 14 13
44 44 H 1.09000 * 109.47263 * 59.97700 * 15 14 13
45 45 H 1.09002 * 109.38762 * 293.81998 * 18 11 10
46 46 H 1.09001 * 109.38514 * 53.50974 * 18 11 10
47 47 H 1.09006 * 109.50100 * 181.31722 * 19 5 4
48 48 H 1.09003 * 109.50058 * 301.41044 * 19 5 4
49 49 H 1.09002 * 109.58953 * 185.57905 * 20 19 5
50 50 H 1.09004 * 109.58565 * 65.15332 * 20 19 5
51 51 H 0.97002 * 120.00123 * 180.02562 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8954 1.0270 0.0000
4 6 2.0465 -0.7288 -1.2445
5 6 1.6473 -2.2043 -1.1691
6 1 0.5625 -2.2839 -1.0995
7 7 2.1110 -2.8975 -2.3736
8 6 1.4864 -4.0173 -2.7892
9 8 0.5404 -4.4507 -2.1664
10 6 1.9638 -4.7306 -4.0279
11 7 1.1241 -5.9122 -4.2666
12 6 1.6853 -6.7501 -5.3388
13 6 0.9632 -8.0985 -5.3377
14 7 -0.4823 -7.8922 -5.3367
15 6 -1.3483 -9.0041 -5.7363
16 6 -1.0508 -6.7335 -4.9868
17 8 -2.2612 -6.6576 -4.9845
18 6 -0.2529 -5.5215 -4.5970
19 6 2.2857 -2.8447 0.0655
20 6 1.7720 -2.1399 1.3249
21 7 2.0226 -0.6980 1.1953
22 6 2.7072 -0.0187 2.1674
23 1 3.2797 0.8603 1.9108
24 6 2.6653 -0.4600 3.4829
25 7 1.7316 -1.3058 3.8639
26 14 3.9341 0.1466 4.7124
27 1 3.4346 1.3801 5.3714
28 1 4.1706 -0.9013 5.7376
29 1 5.2059 0.4434 4.0055
30 1 -0.3633 0.5094 0.8925
31 1 -0.3633 0.5183 -0.8874
32 1 -0.3633 -1.0276 -0.0051
33 1 1.6106 -0.2791 -2.1367
34 1 3.1325 -0.6472 -1.2895
35 1 2.8675 -2.5507 -2.8718
36 1 1.8960 -4.0583 -4.8832
37 1 2.9994 -5.0419 -3.8915
38 1 1.5398 -6.2586 -6.3007
39 1 2.7496 -6.9052 -5.1623
40 1 1.2487 -8.6610 -4.4488
41 1 1.2476 -8.6598 -6.2277
42 1 -2.3908 -8.6905 -5.6817
43 1 -1.1110 -9.3004 -6.7580
44 1 -1.1875 -9.8488 -5.0664
45 1 -0.7131 -5.0491 -3.7292
46 1 -0.2392 -4.8150 -5.4270
47 1 2.0201 -3.9012 0.1059
48 1 3.3696 -2.7437 0.0085
49 1 2.2970 -2.5249 2.1991
50 1 0.7017 -2.3167 1.4316
51 1 1.7021 -1.6139 4.7832
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000947463995.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:39:59
Heat of formation + Delta-G solvation = -55.614905 kcal
Electronic energy + Delta-G solvation = -30484.612984 eV
Core-core repulsion = 26418.843312 eV
Total energy + Delta-G solvation = -4065.769672 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 1.47 seconds
Orbital eigenvalues (eV)
-41.68854 -40.86690 -39.40863 -38.08259 -36.32711 -35.84896 -34.29174 -32.55015
-31.65815 -30.98549 -30.30397 -28.59644 -27.37644 -26.17093 -25.63323 -23.92905
-23.60011 -22.96563 -21.37507 -20.04208 -19.69170 -18.85606 -18.35265 -17.82298
-17.53942 -17.27602 -17.04462 -16.53221 -16.24803 -15.75923 -15.59320 -15.52414
-15.48856 -15.16851 -14.74863 -14.53552 -14.30062 -14.20316 -14.12407 -13.90640
-13.50814 -13.45442 -13.16585 -13.13593 -12.93071 -12.86783 -12.62162 -12.58423
-12.53419 -12.30680 -12.23030 -12.01589 -11.99522 -11.74742 -11.45840 -11.12294
-11.04517 -10.64936 -10.54222 -9.91940 -9.77434 -9.45195 -8.66590 -7.84597
-5.30146 1.44507 1.47509 1.49022 1.58542 1.75931 1.96927 2.13766
2.52783 2.80423 3.31234 3.49397 3.63062 3.80387 3.81297 3.94085
4.04650 4.13313 4.26567 4.30644 4.33060 4.41076 4.44057 4.47584
4.53695 4.55962 4.63030 4.66199 4.71658 4.76112 4.80382 4.85334
4.91757 4.95039 5.00585 5.11982 5.17621 5.18101 5.34945 5.35133
5.46110 5.52940 5.62947 5.67345 5.69528 5.77458 5.88194 6.31739
6.42172 6.74379 7.01678 7.16922 7.44896 7.89208 8.41673 9.22071
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.022674 B = 0.002235 C = 0.002220
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1234.596759 B =12523.308386 C =12610.419016
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C 0.159 3.841
3 H 0.070 0.930
4 C -0.116 4.116
5 C 0.163 3.837
6 H 0.057 0.943
7 N -0.711 5.711
8 C 0.500 3.500
9 O -0.576 6.576
10 C 0.045 3.955
11 N -0.536 5.536
12 C 0.035 3.965
13 C 0.112 3.888
14 N -0.606 5.606
15 C 0.069 3.931
16 C 0.515 3.485
17 O -0.603 6.603
18 C 0.043 3.957
19 C -0.129 4.129
20 C 0.184 3.816
21 N -0.599 5.599
22 C -0.256 4.256
23 H 0.073 0.927
24 C -0.055 4.055
25 N -0.938 5.938
26 Si 0.966 3.034
27 H -0.287 1.287
28 H -0.298 1.298
29 H -0.266 1.266
30 H 0.026 0.974
31 H 0.074 0.926
32 H 0.031 0.969
33 H 0.091 0.909
34 H 0.076 0.924
35 H 0.416 0.584
36 H 0.101 0.899
37 H 0.145 0.855
38 H 0.063 0.937
39 H 0.132 0.868
40 H 0.074 0.926
41 H 0.118 0.882
42 H 0.061 0.939
43 H 0.089 0.911
44 H 0.074 0.926
45 H 0.095 0.905
46 H 0.085 0.915
47 H 0.040 0.960
48 H 0.062 0.938
49 H 0.051 0.949
50 H -0.015 1.015
51 H 0.247 0.753
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.483 -11.098 -26.827 29.747
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.213 4.213
2 C 0.052 3.948
3 H 0.088 0.912
4 C -0.155 4.155
5 C 0.058 3.942
6 H 0.075 0.925
7 N -0.363 5.363
8 C 0.288 3.712
9 O -0.454 6.454
10 C -0.085 4.085
11 N -0.263 5.263
12 C -0.092 4.092
13 C -0.009 4.009
14 N -0.338 5.338
15 C -0.073 4.073
16 C 0.304 3.696
17 O -0.484 6.484
18 C -0.087 4.087
19 C -0.169 4.169
20 C 0.058 3.942
21 N -0.322 5.322
22 C -0.386 4.386
23 H 0.090 0.910
24 C -0.250 4.250
25 N -0.584 5.584
26 Si 0.795 3.205
27 H -0.214 1.214
28 H -0.224 1.224
29 H -0.190 1.190
30 H 0.045 0.955
31 H 0.093 0.907
32 H 0.051 0.949
33 H 0.109 0.891
34 H 0.095 0.905
35 H 0.253 0.747
36 H 0.119 0.881
37 H 0.162 0.838
38 H 0.081 0.919
39 H 0.150 0.850
40 H 0.092 0.908
41 H 0.136 0.864
42 H 0.080 0.920
43 H 0.108 0.892
44 H 0.092 0.908
45 H 0.113 0.887
46 H 0.103 0.897
47 H 0.059 0.941
48 H 0.081 0.919
49 H 0.069 0.931
50 H 0.003 0.997
51 H 0.056 0.944
Dipole moment (debyes) X Y Z Total
from point charges 5.202 -11.717 -25.811 28.819
hybrid contribution 0.138 0.738 0.857 1.139
sum 5.340 -10.979 -24.954 27.781
Atomic orbital electron populations
1.22190 0.98504 1.00122 1.00447 1.20730 0.91962 0.95614 0.86524
0.91180 1.22105 1.01959 0.92883 0.98577 1.20622 0.97925 0.92054
0.83601 0.92527 1.46000 1.35503 1.26812 1.28033 1.21335 0.82483
0.80411 0.87007 1.90716 1.30042 1.66086 1.58584 1.22140 0.99679
0.91909 0.94783 1.62059 1.00560 1.19625 1.44040 1.22737 1.01550
0.92331 0.92584 1.21844 0.76603 0.98128 1.04373 1.47504 1.09176
1.11931 1.65210 1.21859 0.95514 0.88463 1.01495 1.20459 0.87892
0.85557 0.75701 1.90681 1.16650 1.84724 1.56370 1.22248 0.89954
0.94278 1.02254 1.22286 1.00327 0.98059 0.96277 1.20405 0.95164
0.83775 0.94878 1.44363 1.64077 1.03551 1.20168 1.19529 1.21350
1.10452 0.87271 0.90952 1.25852 0.99562 1.00786 0.98816 1.70217
1.33828 1.37757 1.16634 0.85295 0.79685 0.76891 0.78677 1.21351
1.22436 1.19026 0.95485 0.90721 0.94947 0.89069 0.90532 0.74698
0.88125 0.83751 0.91877 0.84992 0.90761 0.86447 0.91987 0.89212
0.90775 0.88676 0.89733 0.94093 0.91924 0.93058 0.99660 0.94380
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -5.91 9.03 71.98 0.65 -5.26 16
2 C 0.16 6.15 3.28 44.98 0.15 6.30 16
3 H 0.07 2.65 7.93 -2.38 -0.02 2.63 16
4 C -0.12 -3.37 5.03 30.67 0.15 -3.22 16
5 C 0.16 5.25 2.21 45.01 0.10 5.35 16
6 H 0.06 2.20 5.94 -2.39 -0.01 2.19 16
7 N -0.71 -15.96 5.08 -442.40 -2.25 -18.20 16
8 C 0.50 12.32 7.55 87.66 0.66 12.99 16
9 O -0.58 -21.15 13.97 -3.01 -0.04 -21.19 16
10 C 0.04 0.58 5.44 85.56 0.47 1.04 16
11 N -0.54 -9.13 4.47 -905.50 -4.05 -13.18 16
12 C 0.03 0.27 5.59 86.24 0.48 0.75 16
13 C 0.11 1.03 6.64 86.46 0.57 1.61 16
14 N -0.61 -11.03 3.23 -850.26 -2.74 -13.77 16
15 C 0.07 1.03 10.55 127.77 1.35 2.38 16
16 C 0.51 13.66 7.57 87.68 0.66 14.32 16
17 O -0.60 -21.45 16.07 -3.03 -0.05 -21.50 16
18 C 0.04 1.00 5.14 85.42 0.44 1.44 16
19 C -0.13 -5.10 5.65 30.67 0.17 -4.93 16
20 C 0.18 9.28 4.90 86.36 0.42 9.70 16
21 N -0.60 -29.46 2.70 -675.23 -1.82 -31.28 16
22 C -0.26 -13.81 9.58 84.03 0.81 -13.01 16
23 H 0.07 3.73 7.88 -2.91 -0.02 3.71 16
24 C -0.06 -3.10 4.92 84.86 0.42 -2.68 16
25 N -0.94 -57.04 11.20 21.65 0.24 -56.80 16
26 Si 0.97 44.99 29.59 68.60 2.03 47.02 16
27 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16
28 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16
29 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16
30 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16
31 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16
32 H 0.03 1.34 5.74 -2.39 -0.01 1.33 16
33 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16
34 H 0.08 2.07 8.14 -2.39 -0.02 2.06 16
35 H 0.42 5.77 8.60 -92.71 -0.80 4.98 16
36 H 0.10 0.69 8.05 -2.39 -0.02 0.67 16
37 H 0.14 0.92 7.93 -2.39 -0.02 0.90 16
38 H 0.06 0.33 8.08 -2.39 -0.02 0.31 16
39 H 0.13 0.21 7.91 -2.39 -0.02 0.19 16
40 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16
41 H 0.12 0.27 8.13 -2.39 -0.02 0.25 16
42 H 0.06 1.31 6.67 -2.39 -0.02 1.29 16
43 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16
44 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16
45 H 0.10 3.05 6.01 -2.39 -0.01 3.03 16
46 H 0.09 1.56 8.05 -2.39 -0.02 1.54 16
47 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16
48 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16
49 H 0.05 2.94 6.06 -2.39 -0.01 2.92 16
50 H -0.01 -0.83 7.50 -2.38 -0.02 -0.84 16
51 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16
Total: -1.00 -85.00 392.79 -1.04 -86.05
By element:
Atomic # 1 Polarization: 15.94 SS G_CDS: 0.13 Total: 16.07 kcal
Atomic # 6 Polarization: 19.28 SS G_CDS: 7.51 Total: 26.79 kcal
Atomic # 7 Polarization: -122.62 SS G_CDS: -10.62 Total: -133.24 kcal
Atomic # 8 Polarization: -42.60 SS G_CDS: -0.09 Total: -42.69 kcal
Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal
Total: -85.00 -1.04 -86.05 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000947463995.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 30.431 kcal
(2) G-P(sol) polarization free energy of solvation -85.004 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.573 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.042 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.046 kcal
(6) G-S(sol) free energy of system = (1) + (5) -55.615 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.47 seconds