Wall clock time and date at job start Tue Mar 31 2020 21:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.70277 * 2 1 4 4 C 1.52760 * 109.43451 * 120.16709 * 2 1 3 5 5 C 1.53034 * 109.38235 * 65.41926 * 4 2 1 6 6 H 1.08999 * 109.46845 * 301.22059 * 5 4 2 7 7 N 1.46510 * 109.46173 * 181.26309 * 5 4 2 8 8 C 1.34777 * 119.99916 * 154.93091 * 7 5 4 9 9 O 1.21276 * 120.00044 * 0.02562 * 8 7 5 10 10 C 1.50697 * 119.99555 * 179.97438 * 8 7 5 11 11 N 1.46900 * 109.47205 * 180.02562 * 10 8 7 12 12 C 1.47187 * 111.00180 * 188.93804 * 11 10 8 13 13 C 1.52999 * 108.71843 * 167.61919 * 12 11 10 14 14 N 1.46011 * 110.03802 * 50.30310 * 13 12 11 15 15 C 1.46504 * 118.53807 * 161.81833 * 14 13 12 16 16 C 1.33720 * 122.93067 * 341.84415 * 14 13 12 17 17 O 1.21274 * 118.62733 * 181.68092 * 16 14 13 18 18 C 1.46901 * 111.00068 * 66.04566 * 11 10 8 19 19 C 1.53046 * 109.53856 * 61.24561 * 5 4 2 20 20 C 1.53188 * 109.30760 * 298.63191 * 19 5 4 21 21 N 1.46920 * 108.77580 * 54.63833 * 20 19 5 22 22 C 1.36939 * 120.63582 * 126.36663 * 21 20 19 23 23 H 1.07995 * 120.00274 * 209.19622 * 22 21 20 24 24 C 1.38814 * 119.99924 * 29.19414 * 22 21 20 25 25 N 1.31623 * 119.99750 * 24.22945 * 24 22 21 26 26 Si 1.86799 * 120.00119 * 204.23697 * 24 22 21 27 27 H 1.48497 * 109.46863 * 179.97438 * 26 24 22 28 28 H 1.48498 * 109.47014 * 299.99863 * 26 24 22 29 29 H 1.48505 * 109.47110 * 59.99717 * 26 24 22 30 30 H 1.09002 * 109.47380 * 180.35403 * 1 2 3 31 31 H 1.08998 * 109.46939 * 300.35854 * 1 2 3 32 32 H 1.08997 * 109.47070 * 60.35089 * 1 2 3 33 33 H 1.09001 * 109.56005 * 305.38961 * 4 2 1 34 34 H 1.09000 * 109.38856 * 185.34959 * 4 2 1 35 35 H 0.97001 * 119.99748 * 334.93351 * 7 5 4 36 36 H 1.09002 * 109.47608 * 300.00323 * 10 8 7 37 37 H 1.09000 * 109.47224 * 60.00576 * 10 8 7 38 38 H 1.08991 * 109.59410 * 287.40778 * 12 11 10 39 39 H 1.09001 * 109.58979 * 47.86500 * 12 11 10 40 40 H 1.08995 * 109.37618 * 290.13712 * 13 12 11 41 41 H 1.08997 * 109.28700 * 170.42315 * 13 12 11 42 42 H 1.08994 * 109.47181 * 180.02562 * 15 14 13 43 43 H 1.09002 * 109.46553 * 300.02710 * 15 14 13 44 44 H 1.09001 * 109.47040 * 60.02257 * 15 14 13 45 45 H 1.09004 * 109.38931 * 293.82396 * 18 11 10 46 46 H 1.08997 * 109.38388 * 53.61440 * 18 11 10 47 47 H 1.09004 * 109.49599 * 178.68183 * 19 5 4 48 48 H 1.08999 * 109.49404 * 58.58180 * 19 5 4 49 49 H 1.08993 * 109.59025 * 294.84561 * 20 19 5 50 50 H 1.09001 * 109.58413 * 174.42141 * 20 19 5 51 51 H 0.96998 * 120.00078 * 5.78560 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0383 -0.7239 1.2455 5 6 1.6409 -2.2000 1.1726 6 1 0.5564 -2.2811 1.0996 7 7 2.1014 -2.8896 2.3804 8 6 1.4758 -4.0081 2.7977 9 8 0.5320 -4.4440 2.1730 10 6 1.9498 -4.7178 4.0397 11 7 1.1104 -5.8993 4.2791 12 6 1.4034 -6.4973 5.5917 13 6 0.3100 -7.5151 5.9226 14 7 0.1194 -8.4278 4.7989 15 6 -0.5672 -9.6995 5.0388 16 6 0.5441 -8.1549 3.5607 17 8 0.3169 -8.9557 2.6788 18 6 1.2906 -6.8972 3.2162 19 6 2.2843 -2.8431 -0.0582 20 6 1.7740 -2.1421 -1.3211 21 7 2.0226 -0.6996 -1.1945 22 6 2.7052 -0.0210 -2.1685 23 1 3.2868 0.8520 -1.9119 24 6 2.6496 -0.4553 -3.4858 25 7 1.6267 -1.1728 -3.8995 26 14 4.0267 -0.0216 -4.6712 27 1 3.7312 -0.6007 -6.0063 28 1 4.1354 1.4550 -4.7846 29 1 5.3083 -0.5749 -4.1647 30 1 -0.3634 -1.0276 0.0063 31 1 -0.3633 0.5194 0.8867 32 1 -0.3633 0.5084 -0.8931 33 1 1.5987 -0.2724 2.1349 34 1 3.1240 -0.6413 1.2942 35 1 2.8564 -2.5412 2.8798 36 1 2.9859 -5.0294 3.9072 37 1 1.8796 -4.0430 4.8929 38 1 2.3709 -6.9979 5.5576 39 1 1.4193 -5.7176 6.3532 40 1 -0.6237 -6.9902 6.1243 41 1 0.6029 -8.0841 6.8050 42 1 -0.6279 -10.2611 4.1067 43 1 -0.0119 -10.2787 5.7766 44 1 -1.5728 -9.5048 5.4118 45 1 0.9109 -6.4971 2.2761 46 1 2.3512 -7.1253 3.1102 47 1 2.0200 -3.8999 -0.0966 48 1 3.3678 -2.7405 0.0022 49 1 0.7043 -2.3203 -1.4310 50 1 2.3024 -2.5288 -2.1925 51 1 0.8724 -1.3274 -3.3095 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947463996.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:05 Heat of formation + Delta-G solvation = -31.451420 kcal Electronic energy + Delta-G solvation = -30580.779933 eV Core-core repulsion = 26516.058068 eV Total energy + Delta-G solvation = -4064.721865 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.86813 -39.80248 -38.16015 -37.18511 -35.50584 -34.59942 -32.73955 -31.19532 -30.52229 -29.87413 -29.08674 -27.15915 -26.53891 -25.05479 -24.13419 -23.05083 -21.90059 -21.76608 -20.34385 -18.98595 -18.56184 -17.73870 -17.38380 -16.98215 -16.65043 -16.35643 -15.93789 -15.45293 -14.98001 -14.67500 -14.54728 -14.26780 -14.06862 -13.70507 -13.56587 -13.46493 -13.35076 -13.13596 -12.88875 -12.78501 -12.61109 -12.50239 -12.26356 -12.14162 -11.92629 -11.74057 -11.61880 -11.22224 -10.85693 -10.73551 -10.57533 -10.39821 -10.20265 -10.09956 -9.97261 -9.79129 -9.65082 -9.23867 -9.05190 -8.86895 -8.74045 -8.34915 -6.87732 -6.04556 -3.23087 2.38761 2.65929 2.67993 2.94195 3.49932 3.53023 3.56442 3.71662 4.18663 4.27095 4.53853 4.59213 4.67081 4.76186 4.90009 4.95438 5.02726 5.04443 5.07796 5.16522 5.17651 5.24509 5.39334 5.41698 5.48389 5.51584 5.60810 5.70424 5.89290 5.94407 6.02292 6.15247 6.21140 6.25380 6.27281 6.34193 6.43435 6.45995 6.52061 6.62539 6.77803 6.84828 6.97699 7.09324 7.10860 7.24748 7.62373 7.90121 8.02934 8.33501 8.60059 9.13788 9.86100 10.31310 11.23950 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.019879 B = 0.002374 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.217977 B =11793.821155 C =12482.930346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.172 3.828 3 H 0.066 0.934 4 C -0.132 4.132 5 C 0.151 3.849 6 H 0.086 0.914 7 N -0.725 5.725 8 C 0.508 3.492 9 O -0.521 6.521 10 C 0.034 3.966 11 N -0.514 5.514 12 C 0.033 3.967 13 C 0.122 3.878 14 N -0.611 5.611 15 C 0.073 3.927 16 C 0.527 3.473 17 O -0.547 6.547 18 C 0.034 3.966 19 C -0.142 4.142 20 C 0.154 3.846 21 N -0.591 5.591 22 C -0.350 4.350 23 H 0.055 0.945 24 C -0.023 4.023 25 N -0.914 5.914 26 Si 1.064 2.936 27 H -0.286 1.286 28 H -0.293 1.293 29 H -0.294 1.294 30 H 0.048 0.952 31 H 0.039 0.961 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.394 0.606 36 H 0.068 0.932 37 H 0.109 0.891 38 H 0.047 0.953 39 H 0.099 0.901 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.058 0.942 44 H 0.060 0.940 45 H 0.137 0.863 46 H 0.069 0.931 47 H 0.054 0.946 48 H 0.057 0.943 49 H 0.020 0.980 50 H 0.079 0.921 51 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.473 -9.547 25.259 27.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.063 3.937 3 H 0.085 0.915 4 C -0.172 4.172 5 C 0.048 3.952 6 H 0.104 0.896 7 N -0.376 5.376 8 C 0.293 3.707 9 O -0.396 6.396 10 C -0.097 4.097 11 N -0.240 5.240 12 C -0.095 4.095 13 C -0.002 4.002 14 N -0.345 5.345 15 C -0.070 4.070 16 C 0.315 3.685 17 O -0.424 6.424 18 C -0.096 4.096 19 C -0.182 4.182 20 C 0.028 3.972 21 N -0.314 5.314 22 C -0.479 4.479 23 H 0.073 0.927 24 C -0.226 4.226 25 N -0.554 5.554 26 Si 0.894 3.106 27 H -0.211 1.211 28 H -0.220 1.220 29 H -0.221 1.221 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.228 0.772 36 H 0.085 0.915 37 H 0.127 0.873 38 H 0.066 0.934 39 H 0.118 0.882 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.109 0.891 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.155 0.845 46 H 0.086 0.914 47 H 0.072 0.928 48 H 0.076 0.924 49 H 0.038 0.962 50 H 0.098 0.902 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.742 -10.346 22.732 24.986 hybrid contribution 0.661 0.301 2.065 2.189 sum 1.403 -10.045 24.796 26.790 Atomic orbital electron populations 1.22335 0.98795 1.01035 1.00270 1.20356 0.91629 0.95262 0.86415 0.91537 1.22211 1.01228 0.94133 0.99581 1.21059 0.99799 0.91309 0.83015 0.89621 1.46284 1.34952 1.27339 1.29058 1.20344 0.83353 0.81172 0.85857 1.90710 1.27440 1.64749 1.56700 1.22083 0.95829 0.93438 0.98347 1.62166 1.54338 1.05886 1.01600 1.22569 0.97091 0.97752 0.92068 1.21481 0.99564 0.90630 0.88493 1.47311 1.58294 1.20000 1.08905 1.21737 0.96521 0.85430 1.03303 1.20122 0.78870 0.87669 0.81850 1.90723 1.56975 1.48736 1.45931 1.22551 0.99428 0.89052 0.98565 1.22443 1.00308 0.99053 0.96389 1.20894 0.97302 0.84010 0.95016 1.44197 1.64580 1.02535 1.20109 1.19924 1.25422 1.14099 0.88501 0.92735 1.25859 1.01425 0.99614 0.95652 1.70771 1.05567 1.40985 1.38030 0.83535 0.75249 0.75575 0.76219 1.21121 1.22021 1.22123 0.93258 0.94193 0.92758 0.92458 0.91872 0.77243 0.91450 0.87298 0.93427 0.88246 0.90625 0.90131 0.89128 0.92299 0.92138 0.84539 0.91360 0.92753 0.92402 0.96197 0.90233 0.91867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.11 9.02 37.16 0.34 -2.78 16 2 C 0.17 3.41 3.27 -67.82 -0.22 3.19 16 3 H 0.07 1.35 7.93 -51.93 -0.41 0.93 16 4 C -0.13 -2.10 4.99 -26.84 -0.13 -2.23 16 5 C 0.15 2.48 2.21 -67.88 -0.15 2.33 16 6 H 0.09 1.61 5.93 -51.93 -0.31 1.30 16 7 N -0.73 -9.00 5.08 -53.76 -0.27 -9.27 16 8 C 0.51 6.61 7.55 -10.99 -0.08 6.53 16 9 O -0.52 -9.22 13.97 5.56 0.08 -9.14 16 10 C 0.03 0.28 5.44 -4.98 -0.03 0.26 16 11 N -0.51 -4.99 4.47 -237.55 -1.06 -6.05 16 12 C 0.03 0.20 5.60 -3.67 -0.02 0.18 16 13 C 0.12 0.75 6.64 -4.31 -0.03 0.72 16 14 N -0.61 -5.98 3.23 -182.47 -0.59 -6.57 16 15 C 0.07 0.58 10.55 59.85 0.63 1.21 16 16 C 0.53 6.99 7.57 -11.67 -0.09 6.91 16 17 O -0.55 -9.34 16.07 5.56 0.09 -9.25 16 18 C 0.03 0.41 5.14 -5.19 -0.03 0.38 16 19 C -0.14 -2.72 5.65 -26.61 -0.15 -2.87 16 20 C 0.15 3.62 4.29 -3.72 -0.02 3.61 16 21 N -0.59 -14.28 2.55 -165.03 -0.42 -14.70 16 22 C -0.35 -9.54 9.48 -15.06 -0.14 -9.69 16 23 H 0.05 1.49 7.94 -52.49 -0.42 1.07 16 24 C -0.02 -0.64 4.69 -17.43 -0.08 -0.73 16 25 N -0.91 -27.41 12.45 55.49 0.69 -26.72 16 26 Si 1.06 25.12 29.98 -169.99 -5.10 20.03 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 28 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 29 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 30 H 0.05 0.96 5.74 -51.93 -0.30 0.66 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.39 3.61 8.60 -40.82 -0.35 3.25 16 36 H 0.07 0.44 8.05 -51.93 -0.42 0.02 16 37 H 0.11 0.61 7.93 -51.93 -0.41 0.20 16 38 H 0.05 0.26 8.08 -51.93 -0.42 -0.16 16 39 H 0.10 0.35 7.91 -51.93 -0.41 -0.06 16 40 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.08 0.29 8.13 -51.93 -0.42 -0.14 16 42 H 0.09 0.92 6.67 -51.93 -0.35 0.58 16 43 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.14 2.12 6.01 -51.93 -0.31 1.81 16 46 H 0.07 0.72 8.05 -51.93 -0.42 0.30 16 47 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 48 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 49 H 0.02 0.49 7.23 -51.93 -0.38 0.12 16 50 H 0.08 2.11 6.39 -51.93 -0.33 1.78 16 51 H 0.27 8.19 6.71 -40.82 -0.27 7.92 16 LS Contribution 391.79 15.07 5.90 5.90 Total: -1.00 -35.66 391.79 -9.41 -45.07 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -8.53 Total: 3.68 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: -0.20 Total: 7.03 kcal Atomic # 7 Polarization: -61.66 SS G_CDS: -1.65 Total: -63.31 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: 0.17 Total: -18.39 kcal Atomic # 14 Polarization: 25.12 SS G_CDS: -5.10 Total: 20.03 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.66 -9.41 -45.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947463996.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.617 kcal (2) G-P(sol) polarization free energy of solvation -35.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds