Wall clock time and date at job start Tue Mar 31 2020 21:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.70277 * 2 1 4 4 C 1.52760 * 109.43451 * 120.16709 * 2 1 3 5 5 C 1.53034 * 109.38235 * 65.41926 * 4 2 1 6 6 H 1.08999 * 109.46845 * 301.22059 * 5 4 2 7 7 N 1.46510 * 109.46173 * 181.26309 * 5 4 2 8 8 C 1.34777 * 119.99916 * 154.93091 * 7 5 4 9 9 O 1.21276 * 120.00044 * 0.02562 * 8 7 5 10 10 C 1.50697 * 119.99555 * 179.97438 * 8 7 5 11 11 N 1.46900 * 109.47205 * 180.02562 * 10 8 7 12 12 C 1.47187 * 111.00180 * 188.93804 * 11 10 8 13 13 C 1.52999 * 108.71843 * 167.61919 * 12 11 10 14 14 N 1.46011 * 110.03802 * 50.30310 * 13 12 11 15 15 C 1.46504 * 118.53807 * 161.81833 * 14 13 12 16 16 C 1.33720 * 122.93067 * 341.84415 * 14 13 12 17 17 O 1.21274 * 118.62733 * 181.68092 * 16 14 13 18 18 C 1.46901 * 111.00068 * 66.04566 * 11 10 8 19 19 C 1.53046 * 109.53856 * 61.24561 * 5 4 2 20 20 C 1.53188 * 109.30760 * 298.63191 * 19 5 4 21 21 N 1.46920 * 108.77580 * 54.63833 * 20 19 5 22 22 C 1.36939 * 120.63582 * 126.36663 * 21 20 19 23 23 H 1.07995 * 120.00274 * 209.19622 * 22 21 20 24 24 C 1.38814 * 119.99924 * 29.19414 * 22 21 20 25 25 N 1.31623 * 119.99750 * 24.22945 * 24 22 21 26 26 Si 1.86799 * 120.00119 * 204.23697 * 24 22 21 27 27 H 1.48497 * 109.46863 * 179.97438 * 26 24 22 28 28 H 1.48498 * 109.47014 * 299.99863 * 26 24 22 29 29 H 1.48505 * 109.47110 * 59.99717 * 26 24 22 30 30 H 1.09002 * 109.47380 * 180.35403 * 1 2 3 31 31 H 1.08998 * 109.46939 * 300.35854 * 1 2 3 32 32 H 1.08997 * 109.47070 * 60.35089 * 1 2 3 33 33 H 1.09001 * 109.56005 * 305.38961 * 4 2 1 34 34 H 1.09000 * 109.38856 * 185.34959 * 4 2 1 35 35 H 0.97001 * 119.99748 * 334.93351 * 7 5 4 36 36 H 1.09002 * 109.47608 * 300.00323 * 10 8 7 37 37 H 1.09000 * 109.47224 * 60.00576 * 10 8 7 38 38 H 1.08991 * 109.59410 * 287.40778 * 12 11 10 39 39 H 1.09001 * 109.58979 * 47.86500 * 12 11 10 40 40 H 1.08995 * 109.37618 * 290.13712 * 13 12 11 41 41 H 1.08997 * 109.28700 * 170.42315 * 13 12 11 42 42 H 1.08994 * 109.47181 * 180.02562 * 15 14 13 43 43 H 1.09002 * 109.46553 * 300.02710 * 15 14 13 44 44 H 1.09001 * 109.47040 * 60.02257 * 15 14 13 45 45 H 1.09004 * 109.38931 * 293.82396 * 18 11 10 46 46 H 1.08997 * 109.38388 * 53.61440 * 18 11 10 47 47 H 1.09004 * 109.49599 * 178.68183 * 19 5 4 48 48 H 1.08999 * 109.49404 * 58.58180 * 19 5 4 49 49 H 1.08993 * 109.59025 * 294.84561 * 20 19 5 50 50 H 1.09001 * 109.58413 * 174.42141 * 20 19 5 51 51 H 0.96998 * 120.00078 * 5.78560 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0383 -0.7239 1.2455 5 6 1.6409 -2.2000 1.1726 6 1 0.5564 -2.2811 1.0996 7 7 2.1014 -2.8896 2.3804 8 6 1.4758 -4.0081 2.7977 9 8 0.5320 -4.4440 2.1730 10 6 1.9498 -4.7178 4.0397 11 7 1.1104 -5.8993 4.2791 12 6 1.4034 -6.4973 5.5917 13 6 0.3100 -7.5151 5.9226 14 7 0.1194 -8.4278 4.7989 15 6 -0.5672 -9.6995 5.0388 16 6 0.5441 -8.1549 3.5607 17 8 0.3169 -8.9557 2.6788 18 6 1.2906 -6.8972 3.2162 19 6 2.2843 -2.8431 -0.0582 20 6 1.7740 -2.1421 -1.3211 21 7 2.0226 -0.6996 -1.1945 22 6 2.7052 -0.0210 -2.1685 23 1 3.2868 0.8520 -1.9119 24 6 2.6496 -0.4553 -3.4858 25 7 1.6267 -1.1728 -3.8995 26 14 4.0267 -0.0216 -4.6712 27 1 3.7312 -0.6007 -6.0063 28 1 4.1354 1.4550 -4.7846 29 1 5.3083 -0.5749 -4.1647 30 1 -0.3634 -1.0276 0.0063 31 1 -0.3633 0.5194 0.8867 32 1 -0.3633 0.5084 -0.8931 33 1 1.5987 -0.2724 2.1349 34 1 3.1240 -0.6413 1.2942 35 1 2.8564 -2.5412 2.8798 36 1 2.9859 -5.0294 3.9072 37 1 1.8796 -4.0430 4.8929 38 1 2.3709 -6.9979 5.5576 39 1 1.4193 -5.7176 6.3532 40 1 -0.6237 -6.9902 6.1243 41 1 0.6029 -8.0841 6.8050 42 1 -0.6279 -10.2611 4.1067 43 1 -0.0119 -10.2787 5.7766 44 1 -1.5728 -9.5048 5.4118 45 1 0.9109 -6.4971 2.2761 46 1 2.3512 -7.1253 3.1102 47 1 2.0200 -3.8999 -0.0966 48 1 3.3678 -2.7405 0.0022 49 1 0.7043 -2.3203 -1.4310 50 1 2.3024 -2.5288 -2.1925 51 1 0.8724 -1.3274 -3.3095 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947463996.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:04 Heat of formation + Delta-G solvation = -59.502814 kcal Electronic energy + Delta-G solvation = -30581.996333 eV Core-core repulsion = 26516.058068 eV Total energy + Delta-G solvation = -4065.938265 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.72600 -40.95646 -39.58169 -38.13336 -36.40909 -35.99653 -34.45192 -32.70009 -31.56479 -30.97529 -30.29810 -28.66743 -27.41355 -26.11167 -25.64732 -23.94479 -23.63992 -23.08470 -21.43925 -20.23867 -19.71776 -19.32886 -18.42581 -17.89277 -17.62054 -17.28784 -17.05461 -16.39165 -16.13395 -15.94302 -15.62818 -15.49692 -15.43651 -15.34482 -15.11034 -14.67289 -14.54189 -14.23678 -14.17384 -13.84423 -13.54061 -13.53139 -13.41510 -13.18632 -12.89276 -12.80148 -12.69797 -12.55399 -12.47658 -12.33111 -12.29962 -11.96978 -11.91930 -11.74889 -11.48221 -11.15812 -11.08025 -10.71205 -10.45912 -10.00390 -9.79635 -9.50836 -8.92201 -8.22600 -5.39460 1.41672 1.57979 1.65897 1.70451 1.84124 1.93860 2.07832 2.66597 2.76174 3.23922 3.45931 3.48886 3.71686 3.78968 3.85411 3.98939 4.00796 4.22099 4.24892 4.27530 4.30310 4.38637 4.40135 4.41470 4.54151 4.56707 4.60976 4.62392 4.63213 4.73845 4.74331 4.80946 4.90598 4.98686 5.00347 5.01941 5.06101 5.17066 5.22598 5.27022 5.33202 5.53465 5.58012 5.59785 5.84738 5.88769 6.29388 6.40034 6.68061 6.99370 7.08308 7.38596 7.79616 8.26036 9.02534 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.019879 B = 0.002374 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.217977 B =11793.821155 C =12482.930346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.160 3.840 3 H 0.066 0.934 4 C -0.116 4.116 5 C 0.165 3.835 6 H 0.060 0.940 7 N -0.711 5.711 8 C 0.501 3.499 9 O -0.575 6.575 10 C 0.044 3.956 11 N -0.532 5.532 12 C 0.034 3.966 13 C 0.112 3.888 14 N -0.606 5.606 15 C 0.069 3.931 16 C 0.515 3.485 17 O -0.603 6.603 18 C 0.042 3.958 19 C -0.127 4.127 20 C 0.165 3.835 21 N -0.606 5.606 22 C -0.348 4.348 23 H 0.057 0.943 24 C -0.080 4.080 25 N -0.947 5.947 26 Si 1.114 2.886 27 H -0.298 1.298 28 H -0.273 1.273 29 H -0.278 1.278 30 H 0.035 0.965 31 H 0.078 0.922 32 H 0.024 0.976 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.416 0.584 36 H 0.096 0.904 37 H 0.152 0.848 38 H 0.060 0.940 39 H 0.136 0.864 40 H 0.077 0.923 41 H 0.118 0.882 42 H 0.060 0.940 43 H 0.089 0.911 44 H 0.076 0.924 45 H 0.093 0.907 46 H 0.081 0.919 47 H 0.043 0.957 48 H 0.063 0.937 49 H -0.007 1.007 50 H 0.039 0.961 51 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.539 -8.497 30.199 31.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.053 3.947 3 H 0.084 0.916 4 C -0.155 4.155 5 C 0.059 3.941 6 H 0.079 0.921 7 N -0.363 5.363 8 C 0.289 3.711 9 O -0.453 6.453 10 C -0.086 4.086 11 N -0.259 5.259 12 C -0.093 4.093 13 C -0.009 4.009 14 N -0.338 5.338 15 C -0.073 4.073 16 C 0.304 3.696 17 O -0.485 6.485 18 C -0.089 4.089 19 C -0.167 4.167 20 C 0.038 3.962 21 N -0.330 5.330 22 C -0.478 4.478 23 H 0.075 0.925 24 C -0.276 4.276 25 N -0.589 5.589 26 Si 0.939 3.061 27 H -0.224 1.224 28 H -0.199 1.199 29 H -0.205 1.205 30 H 0.054 0.946 31 H 0.097 0.903 32 H 0.044 0.956 33 H 0.114 0.886 34 H 0.092 0.908 35 H 0.254 0.746 36 H 0.113 0.887 37 H 0.169 0.831 38 H 0.078 0.922 39 H 0.154 0.846 40 H 0.096 0.904 41 H 0.136 0.864 42 H 0.079 0.921 43 H 0.108 0.892 44 H 0.094 0.906 45 H 0.112 0.888 46 H 0.098 0.902 47 H 0.062 0.938 48 H 0.081 0.919 49 H 0.011 0.989 50 H 0.058 0.942 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.838 -9.256 27.811 29.448 hybrid contribution -0.066 -0.017 0.638 0.641 sum 2.772 -9.273 28.449 30.050 Atomic orbital electron populations 1.22217 0.98229 1.00303 1.00692 1.20641 0.92098 0.95486 0.86432 0.91551 1.22022 1.01926 0.92946 0.98589 1.20588 0.98063 0.91977 0.83433 0.92138 1.45976 1.35581 1.27157 1.27630 1.21344 0.82330 0.80646 0.86825 1.90717 1.30022 1.65956 1.58648 1.22153 0.96503 0.93090 0.96842 1.62088 1.55633 1.05769 1.02389 1.22766 0.97335 0.98657 0.90528 1.21865 1.00199 0.90721 0.88133 1.47506 1.56674 1.20875 1.08711 1.21866 0.97898 0.84941 1.02632 1.20426 0.79039 0.87593 0.82561 1.90686 1.59454 1.50484 1.47855 1.22246 0.99523 0.89126 0.97978 1.22217 1.00460 0.98084 0.95945 1.20599 0.95269 0.84572 0.95744 1.44396 1.64976 1.02758 1.20854 1.20221 1.24707 1.13742 0.89143 0.92528 1.27227 1.02704 0.99762 0.97937 1.70898 1.06289 1.43748 1.38004 0.82868 0.73143 0.76428 0.73660 1.22419 1.19853 1.20457 0.94627 0.90296 0.95625 0.88642 0.90803 0.74639 0.88667 0.83087 0.92166 0.84614 0.90431 0.86432 0.92124 0.89222 0.90558 0.88846 0.90171 0.93805 0.91870 0.98855 0.94199 0.93802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.85 9.02 71.98 0.65 -5.20 16 2 C 0.16 6.24 3.27 44.83 0.15 6.38 16 3 H 0.07 2.59 7.93 -2.39 -0.02 2.57 16 4 C -0.12 -3.35 4.99 30.53 0.15 -3.20 16 5 C 0.16 5.21 2.21 45.02 0.10 5.31 16 6 H 0.06 2.28 5.93 -2.39 -0.01 2.27 16 7 N -0.71 -15.64 5.08 -442.39 -2.25 -17.89 16 8 C 0.50 12.09 7.55 87.66 0.66 12.76 16 9 O -0.57 -20.75 13.97 -3.02 -0.04 -20.79 16 10 C 0.04 0.55 5.44 85.56 0.47 1.02 16 11 N -0.53 -8.88 4.47 -905.46 -4.05 -12.93 16 12 C 0.03 0.24 5.60 86.25 0.48 0.73 16 13 C 0.11 0.96 6.64 86.47 0.57 1.54 16 14 N -0.61 -11.00 3.23 -850.18 -2.74 -13.75 16 15 C 0.07 1.03 10.55 127.77 1.35 2.37 16 16 C 0.51 13.99 7.57 87.68 0.66 14.66 16 17 O -0.60 -22.14 16.07 -3.01 -0.05 -22.18 16 18 C 0.04 1.01 5.14 85.42 0.44 1.45 16 19 C -0.13 -4.98 5.65 30.67 0.17 -4.81 16 20 C 0.16 8.20 4.29 86.36 0.37 8.57 16 21 N -0.61 -29.95 2.55 -676.05 -1.72 -31.67 16 22 C -0.35 -19.28 9.48 84.03 0.80 -18.48 16 23 H 0.06 3.07 7.94 -2.91 -0.02 3.05 16 24 C -0.08 -4.63 4.69 84.86 0.40 -4.24 16 25 N -0.95 -59.78 12.45 21.65 0.27 -59.51 16 26 Si 1.11 51.53 29.98 68.60 2.06 53.59 16 27 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 28 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 29 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 30 H 0.03 1.42 5.74 -2.39 -0.01 1.41 16 31 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.42 5.67 8.60 -92.71 -0.80 4.87 16 36 H 0.10 0.75 8.05 -2.39 -0.02 0.73 16 37 H 0.15 0.69 7.93 -2.39 -0.02 0.67 16 38 H 0.06 0.33 8.08 -2.39 -0.02 0.32 16 39 H 0.14 0.05 7.91 -2.39 -0.02 0.03 16 40 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.12 0.20 8.13 -2.39 -0.02 0.19 16 42 H 0.06 1.30 6.67 -2.39 -0.02 1.28 16 43 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.09 3.12 6.01 -2.39 -0.01 3.11 16 46 H 0.08 1.64 8.05 -2.39 -0.02 1.62 16 47 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 48 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 49 H -0.01 -0.35 7.23 -2.39 -0.02 -0.37 16 50 H 0.04 2.27 6.39 -2.39 -0.02 2.25 16 51 H 0.25 16.38 6.71 -92.71 -0.62 15.75 16 Total: -1.00 -87.57 391.79 -0.82 -88.39 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: 0.28 Total: 17.88 kcal Atomic # 6 Polarization: 11.44 SS G_CDS: 7.42 Total: 18.86 kcal Atomic # 7 Polarization: -125.26 SS G_CDS: -10.49 Total: -135.75 kcal Atomic # 8 Polarization: -42.89 SS G_CDS: -0.09 Total: -42.98 kcal Atomic # 14 Polarization: 51.53 SS G_CDS: 2.06 Total: 53.59 kcal Total: -87.57 -0.82 -88.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947463996.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.887 kcal (2) G-P(sol) polarization free energy of solvation -87.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds