Wall clock time and date at job start Tue Mar 31 2020 21:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.70609 * 2 1 4 4 C 1.53625 * 109.66247 * 120.59447 * 2 1 3 5 5 C 1.53037 * 109.24236 * 174.54941 * 4 2 1 6 6 H 1.09006 * 109.46255 * 58.52673 * 5 4 2 7 7 N 1.46497 * 109.44933 * 178.49320 * 5 4 2 8 8 C 1.34780 * 120.00175 * 205.05612 * 7 5 4 9 9 O 1.21280 * 119.99681 * 0.02562 * 8 7 5 10 10 C 1.50696 * 120.00172 * 179.97438 * 8 7 5 11 11 C 1.53034 * 109.46337 * 300.07279 * 10 8 7 12 12 C 1.53189 * 109.31792 * 178.61264 * 11 10 8 13 13 N 1.46932 * 108.77372 * 54.63230 * 12 11 10 14 14 C 1.34776 * 120.62615 * 126.41295 * 13 12 11 15 15 N 1.34774 * 120.00673 * 5.28433 * 14 13 12 16 16 O 1.21591 * 119.99632 * 185.28349 * 14 13 12 17 17 C 1.46926 * 118.73795 * 306.39686 * 13 12 11 18 18 C 1.53038 * 109.46176 * 180.02562 * 10 8 7 19 19 C 1.53049 * 109.53620 * 298.50588 * 5 4 2 20 20 C 1.53192 * 109.30992 * 61.36849 * 19 5 4 21 21 N 1.46924 * 108.77460 * 305.36101 * 20 19 5 22 22 C 1.36935 * 120.63504 * 233.58847 * 21 20 19 23 23 H 1.08003 * 120.00288 * 149.95135 * 22 21 20 24 24 C 1.38810 * 119.99777 * 330.22215 * 22 21 20 25 25 N 1.31625 * 119.99995 * 344.85377 * 24 22 21 26 26 Si 1.86801 * 120.00113 * 164.84638 * 24 22 21 27 27 H 1.48497 * 109.46952 * 90.00214 * 26 24 22 28 28 H 1.48499 * 109.47097 * 210.00406 * 26 24 22 29 29 H 1.48498 * 109.47084 * 330.00130 * 26 24 22 30 30 H 1.08997 * 109.47186 * 180.35616 * 1 2 3 31 31 H 1.08999 * 109.46702 * 300.35669 * 1 2 3 32 32 H 1.08999 * 109.46840 * 60.35912 * 1 2 3 33 33 H 1.08996 * 109.63748 * 54.55444 * 4 2 1 34 34 H 1.09005 * 109.45704 * 294.42797 * 4 2 1 35 35 H 0.97002 * 120.00059 * 25.06702 * 7 5 4 36 36 H 1.09002 * 109.46023 * 60.03420 * 10 8 7 37 37 H 1.09001 * 109.49839 * 298.56948 * 11 10 8 38 38 H 1.09006 * 109.49881 * 58.66016 * 11 10 8 39 39 H 1.08999 * 109.58754 * 294.84859 * 12 11 10 40 40 H 1.08996 * 109.59057 * 174.41862 * 12 11 10 41 41 H 0.97003 * 119.99417 * 355.13933 * 15 14 13 42 42 H 0.96993 * 120.00112 * 175.13137 * 15 14 13 43 43 H 1.08995 * 109.58591 * 293.81486 * 17 13 12 44 44 H 1.09003 * 109.58136 * 173.39509 * 17 13 12 45 45 H 1.09000 * 109.49739 * 301.34273 * 18 10 8 46 46 H 1.09004 * 109.49581 * 61.40283 * 18 10 8 47 47 H 1.08995 * 109.49848 * 301.41757 * 19 5 4 48 48 H 1.09003 * 109.52181 * 181.33221 * 19 5 4 49 49 H 1.08999 * 109.58470 * 185.58126 * 20 19 5 50 50 H 1.08999 * 109.70796 * 65.21794 * 20 19 5 51 51 H 0.96997 * 119.99668 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 6 2.0470 -0.7363 1.2453 5 6 3.5712 -0.8498 1.1677 6 1 4.0066 0.1471 1.0990 7 7 4.0723 -1.5196 2.3704 8 6 5.3360 -1.3024 2.7856 9 8 6.0581 -0.5522 2.1638 10 6 5.8513 -1.9909 4.0231 11 6 4.9919 -1.5908 5.2245 12 6 5.4970 -2.3192 6.4739 13 7 6.9302 -2.0396 6.6373 14 6 7.4063 -1.5511 7.7997 15 7 6.5856 -1.4147 8.8600 16 8 8.5764 -1.2335 7.8919 17 6 7.8344 -2.3030 5.5096 18 6 7.3028 -1.5743 4.2714 19 6 3.9615 -1.6629 -0.0688 20 6 3.4657 -0.9421 -1.3264 21 7 2.0226 -0.6997 -1.1945 22 6 1.1537 -1.1128 -2.1689 23 1 0.1419 -1.3872 -1.9093 24 6 1.5751 -1.1842 -3.4896 25 7 2.6877 -0.5855 -3.8587 26 14 0.5632 -2.1300 -4.7430 27 1 -0.4279 -1.2182 -5.3687 28 1 1.4608 -2.6795 -5.7907 29 1 -0.1476 -3.2443 -4.0660 30 1 -0.3633 -1.0276 0.0064 31 1 -0.3633 0.5194 0.8868 32 1 -0.3633 0.5082 -0.8932 33 1 1.6096 -1.7337 1.2890 34 1 1.7689 -0.1776 2.1390 35 1 3.4947 -2.1194 2.8678 36 1 5.8018 -3.0710 3.8851 37 1 5.0606 -0.5139 5.3785 38 1 3.9540 -1.8665 5.0373 39 1 5.3451 -3.3923 6.3578 40 1 4.9533 -1.9636 7.3491 41 1 5.6381 -1.6010 8.7670 42 1 6.9422 -1.1303 9.7160 43 1 7.8731 -3.3747 5.3148 44 1 8.8328 -1.9367 5.7486 45 1 7.9102 -1.8381 3.4056 46 1 7.3495 -0.4974 4.4339 47 1 3.5061 -2.6516 -0.0128 48 1 5.0460 -1.7638 -0.1110 49 1 3.6532 -1.5639 -2.2018 50 1 3.9875 0.0087 -1.4349 51 1 2.9819 -0.6351 -4.7817 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948016938.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:40 Heat of formation + Delta-G solvation = -51.550019 kcal Electronic energy + Delta-G solvation = -30385.260153 eV Core-core repulsion = 26319.666747 eV Total energy + Delta-G solvation = -4065.593406 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.85380 -39.80010 -37.97457 -37.07792 -34.63301 -34.31595 -32.98191 -32.34597 -31.36501 -31.09998 -29.48917 -26.64876 -26.17618 -24.70152 -23.67848 -22.56215 -21.89532 -20.90475 -20.08089 -19.84845 -19.25862 -18.71764 -17.31498 -17.03726 -16.29301 -15.90449 -15.76746 -15.42406 -15.09146 -14.87331 -14.64161 -14.18284 -14.03748 -13.89589 -13.68356 -13.59802 -13.30121 -13.21439 -12.85148 -12.78860 -12.57885 -12.03396 -11.68924 -11.61517 -11.24125 -11.11594 -11.09733 -11.01856 -10.92590 -10.88271 -10.65685 -10.49737 -10.34057 -10.15379 -10.06634 -10.05634 -9.77466 -9.73900 -9.34765 -8.97496 -8.71110 -8.42959 -6.63979 -5.78060 -3.22871 2.41204 2.75284 2.85733 3.30807 3.36762 3.43527 3.44711 3.70436 4.26338 4.32961 4.47942 4.48790 4.71700 4.88544 4.94265 5.05648 5.09282 5.25480 5.29758 5.35703 5.37451 5.41779 5.52941 5.57407 5.63867 5.74808 5.75566 5.98118 6.06843 6.08635 6.12926 6.24033 6.29419 6.40175 6.41065 6.41537 6.49252 6.54932 6.63167 6.78038 6.88610 7.01779 7.08016 7.37312 7.47226 7.66660 7.71423 7.81430 8.26343 8.39653 8.46686 9.21554 9.85105 10.42656 11.30492 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.027845 B = 0.002168 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.325441 B =12913.354889 C =13431.049937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.171 3.829 3 H 0.027 0.973 4 C -0.133 4.133 5 C 0.150 3.850 6 H 0.080 0.920 7 N -0.724 5.724 8 C 0.513 3.487 9 O -0.537 6.537 10 C -0.107 4.107 11 C -0.127 4.127 12 C 0.114 3.886 13 N -0.628 5.628 14 C 0.709 3.291 15 N -0.869 5.869 16 O -0.593 6.593 17 C 0.128 3.872 18 C -0.115 4.115 19 C -0.145 4.145 20 C 0.175 3.825 21 N -0.587 5.587 22 C -0.251 4.251 23 H 0.069 0.931 24 C 0.003 3.997 25 N -0.902 5.902 26 Si 0.900 3.100 27 H -0.287 1.287 28 H -0.290 1.290 29 H -0.280 1.280 30 H 0.053 0.947 31 H 0.037 0.963 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.393 0.607 36 H 0.098 0.902 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.395 0.605 42 H 0.413 0.587 43 H 0.068 0.932 44 H 0.098 0.902 45 H 0.086 0.914 46 H 0.075 0.925 47 H 0.054 0.946 48 H 0.052 0.948 49 H 0.088 0.912 50 H 0.020 0.980 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.411 -5.692 23.811 24.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.063 3.937 3 H 0.044 0.956 4 C -0.173 4.173 5 C 0.047 3.953 6 H 0.098 0.902 7 N -0.374 5.374 8 C 0.298 3.702 9 O -0.413 6.413 10 C -0.128 4.128 11 C -0.165 4.165 12 C -0.010 4.010 13 N -0.367 5.367 14 C 0.409 3.591 15 N -0.440 5.440 16 O -0.471 6.471 17 C 0.005 3.995 18 C -0.153 4.153 19 C -0.186 4.186 20 C 0.049 3.951 21 N -0.311 5.311 22 C -0.381 4.381 23 H 0.087 0.913 24 C -0.196 4.196 25 N -0.546 5.546 26 Si 0.730 3.270 27 H -0.214 1.214 28 H -0.216 1.216 29 H -0.205 1.205 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.226 0.774 36 H 0.116 0.884 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.226 0.774 42 H 0.245 0.755 43 H 0.086 0.914 44 H 0.116 0.884 45 H 0.104 0.896 46 H 0.094 0.906 47 H 0.073 0.927 48 H 0.070 0.930 49 H 0.106 0.894 50 H 0.038 0.962 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.800 -4.971 23.059 23.893 hybrid contribution -1.222 -0.778 -0.233 1.467 sum 2.579 -5.750 22.826 23.680 Atomic orbital electron populations 1.21785 0.95772 1.01339 1.00346 1.20451 0.93034 0.93513 0.86695 0.95577 1.22439 0.93736 1.01510 0.99583 1.21037 0.94144 0.96732 0.83413 0.90190 1.46344 1.13357 1.48361 1.29327 1.20481 0.82039 0.81963 0.85725 1.90725 1.56333 1.36977 1.57265 1.21328 0.96901 1.01503 0.93107 1.21927 0.99288 1.01818 0.93506 1.21645 0.80804 1.00368 0.98158 1.47298 1.08212 1.68287 1.12857 1.15861 0.84798 0.77914 0.80536 1.43171 1.11644 1.76501 1.12638 1.90967 1.16133 1.56637 1.83394 1.21580 0.94363 0.99575 0.83972 1.21754 0.94052 1.01780 0.97744 1.22552 0.99649 0.99549 0.96823 1.20731 0.83229 0.97282 0.93899 1.44173 1.02914 1.64924 1.19072 1.19127 0.95319 1.37633 0.86034 0.91344 1.25128 0.97851 0.99566 0.97073 1.70019 1.23910 1.43934 1.16720 0.86341 0.79420 0.79902 0.81346 1.21423 1.21631 1.20548 0.92810 0.94357 0.91829 0.91865 0.92845 0.77364 0.88399 0.90654 0.89922 0.90722 0.90199 0.77409 0.75496 0.91375 0.88385 0.89568 0.90607 0.92745 0.92970 0.89380 0.96193 0.93630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 7.96 37.16 0.30 -2.11 16 2 C 0.17 3.38 3.51 -67.37 -0.24 3.14 16 3 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 4 C -0.13 -2.10 4.86 -26.39 -0.13 -2.23 16 5 C 0.15 2.49 2.41 -67.89 -0.16 2.33 16 6 H 0.08 1.54 7.58 -51.93 -0.39 1.15 16 7 N -0.72 -9.13 4.96 -53.76 -0.27 -9.39 16 8 C 0.51 6.82 7.12 -10.99 -0.08 6.75 16 9 O -0.54 -9.72 15.64 5.56 0.09 -9.64 16 10 C -0.11 -0.94 2.49 -91.74 -0.23 -1.17 16 11 C -0.13 -0.80 5.27 -26.62 -0.14 -0.94 16 12 C 0.11 0.55 6.39 -3.71 -0.02 0.52 16 13 N -0.63 -5.03 2.97 -178.50 -0.53 -5.57 16 14 C 0.71 7.04 8.57 -86.92 -0.74 6.30 16 15 N -0.87 -4.83 8.78 27.63 0.24 -4.59 16 16 O -0.59 -8.61 16.60 5.29 0.09 -8.53 16 17 C 0.13 1.10 6.44 -3.71 -0.02 1.08 16 18 C -0.11 -1.13 4.65 -26.61 -0.12 -1.25 16 19 C -0.15 -2.81 5.65 -26.61 -0.15 -2.96 16 20 C 0.17 4.17 5.28 -3.71 -0.02 4.15 16 21 N -0.59 -14.12 2.98 -164.51 -0.49 -14.61 16 22 C -0.25 -6.59 8.56 -15.06 -0.13 -6.72 16 23 H 0.07 1.74 6.25 -52.48 -0.33 1.41 16 24 C 0.00 0.07 4.95 -17.43 -0.09 -0.02 16 25 N -0.90 -25.99 11.21 55.49 0.62 -25.37 16 26 Si 0.90 21.31 29.58 -169.99 -5.03 16.29 16 27 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 28 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 29 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 30 H 0.05 0.96 7.44 -51.93 -0.39 0.57 16 31 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 1.24 7.63 -51.93 -0.40 0.85 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.39 3.69 8.00 -40.82 -0.33 3.36 16 36 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.38 7.52 -51.93 -0.39 -0.01 16 39 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 40 H 0.08 0.21 5.65 -51.93 -0.29 -0.09 16 41 H 0.40 1.07 6.32 -40.82 -0.26 0.82 16 42 H 0.41 1.88 8.93 -40.82 -0.36 1.52 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.10 1.01 7.00 -51.93 -0.36 0.65 16 45 H 0.09 0.91 8.07 -51.93 -0.42 0.49 16 46 H 0.08 0.91 8.13 -51.93 -0.42 0.49 16 47 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 48 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 49 H 0.09 2.35 6.13 -51.93 -0.32 2.04 16 50 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 51 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 390.67 15.07 5.89 5.89 Total: -1.00 -35.08 390.67 -9.82 -44.90 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -8.45 Total: 3.74 kcal Atomic # 6 Polarization: 8.86 SS G_CDS: -1.98 Total: 6.88 kcal Atomic # 7 Polarization: -59.10 SS G_CDS: -0.42 Total: -59.53 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: 0.17 Total: -18.16 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.08 -9.82 -44.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948016938.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.653 kcal (2) G-P(sol) polarization free energy of solvation -35.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds