Wall clock time and date at job start Tue Mar 31 2020 21:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.70609 * 2 1 4 4 C 1.53625 * 109.66247 * 120.59447 * 2 1 3 5 5 C 1.53037 * 109.24236 * 174.54941 * 4 2 1 6 6 H 1.09006 * 109.46255 * 58.52673 * 5 4 2 7 7 N 1.46497 * 109.44933 * 178.49320 * 5 4 2 8 8 C 1.34780 * 120.00175 * 205.05612 * 7 5 4 9 9 O 1.21280 * 119.99681 * 0.02562 * 8 7 5 10 10 C 1.50696 * 120.00172 * 179.97438 * 8 7 5 11 11 C 1.53034 * 109.46337 * 300.07279 * 10 8 7 12 12 C 1.53189 * 109.31792 * 178.61264 * 11 10 8 13 13 N 1.46932 * 108.77372 * 54.63230 * 12 11 10 14 14 C 1.34776 * 120.62615 * 126.41295 * 13 12 11 15 15 N 1.34774 * 120.00673 * 5.28433 * 14 13 12 16 16 O 1.21591 * 119.99632 * 185.28349 * 14 13 12 17 17 C 1.46926 * 118.73795 * 306.39686 * 13 12 11 18 18 C 1.53038 * 109.46176 * 180.02562 * 10 8 7 19 19 C 1.53049 * 109.53620 * 298.50588 * 5 4 2 20 20 C 1.53192 * 109.30992 * 61.36849 * 19 5 4 21 21 N 1.46924 * 108.77460 * 305.36101 * 20 19 5 22 22 C 1.36935 * 120.63504 * 233.58847 * 21 20 19 23 23 H 1.08003 * 120.00288 * 149.95135 * 22 21 20 24 24 C 1.38810 * 119.99777 * 330.22215 * 22 21 20 25 25 N 1.31625 * 119.99995 * 344.85377 * 24 22 21 26 26 Si 1.86801 * 120.00113 * 164.84638 * 24 22 21 27 27 H 1.48497 * 109.46952 * 90.00214 * 26 24 22 28 28 H 1.48499 * 109.47097 * 210.00406 * 26 24 22 29 29 H 1.48498 * 109.47084 * 330.00130 * 26 24 22 30 30 H 1.08997 * 109.47186 * 180.35616 * 1 2 3 31 31 H 1.08999 * 109.46702 * 300.35669 * 1 2 3 32 32 H 1.08999 * 109.46840 * 60.35912 * 1 2 3 33 33 H 1.08996 * 109.63748 * 54.55444 * 4 2 1 34 34 H 1.09005 * 109.45704 * 294.42797 * 4 2 1 35 35 H 0.97002 * 120.00059 * 25.06702 * 7 5 4 36 36 H 1.09002 * 109.46023 * 60.03420 * 10 8 7 37 37 H 1.09001 * 109.49839 * 298.56948 * 11 10 8 38 38 H 1.09006 * 109.49881 * 58.66016 * 11 10 8 39 39 H 1.08999 * 109.58754 * 294.84859 * 12 11 10 40 40 H 1.08996 * 109.59057 * 174.41862 * 12 11 10 41 41 H 0.97003 * 119.99417 * 355.13933 * 15 14 13 42 42 H 0.96993 * 120.00112 * 175.13137 * 15 14 13 43 43 H 1.08995 * 109.58591 * 293.81486 * 17 13 12 44 44 H 1.09003 * 109.58136 * 173.39509 * 17 13 12 45 45 H 1.09000 * 109.49739 * 301.34273 * 18 10 8 46 46 H 1.09004 * 109.49581 * 61.40283 * 18 10 8 47 47 H 1.08995 * 109.49848 * 301.41757 * 19 5 4 48 48 H 1.09003 * 109.52181 * 181.33221 * 19 5 4 49 49 H 1.08999 * 109.58470 * 185.58126 * 20 19 5 50 50 H 1.08999 * 109.70796 * 65.21794 * 20 19 5 51 51 H 0.96997 * 119.99668 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 6 2.0470 -0.7363 1.2453 5 6 3.5712 -0.8498 1.1677 6 1 4.0066 0.1471 1.0990 7 7 4.0723 -1.5196 2.3704 8 6 5.3360 -1.3024 2.7856 9 8 6.0581 -0.5522 2.1638 10 6 5.8513 -1.9909 4.0231 11 6 4.9919 -1.5908 5.2245 12 6 5.4970 -2.3192 6.4739 13 7 6.9302 -2.0396 6.6373 14 6 7.4063 -1.5511 7.7997 15 7 6.5856 -1.4147 8.8600 16 8 8.5764 -1.2335 7.8919 17 6 7.8344 -2.3030 5.5096 18 6 7.3028 -1.5743 4.2714 19 6 3.9615 -1.6629 -0.0688 20 6 3.4657 -0.9421 -1.3264 21 7 2.0226 -0.6997 -1.1945 22 6 1.1537 -1.1128 -2.1689 23 1 0.1419 -1.3872 -1.9093 24 6 1.5751 -1.1842 -3.4896 25 7 2.6877 -0.5855 -3.8587 26 14 0.5632 -2.1300 -4.7430 27 1 -0.4279 -1.2182 -5.3687 28 1 1.4608 -2.6795 -5.7907 29 1 -0.1476 -3.2443 -4.0660 30 1 -0.3633 -1.0276 0.0064 31 1 -0.3633 0.5194 0.8868 32 1 -0.3633 0.5082 -0.8932 33 1 1.6096 -1.7337 1.2890 34 1 1.7689 -0.1776 2.1390 35 1 3.4947 -2.1194 2.8678 36 1 5.8018 -3.0710 3.8851 37 1 5.0606 -0.5139 5.3785 38 1 3.9540 -1.8665 5.0373 39 1 5.3451 -3.3923 6.3578 40 1 4.9533 -1.9636 7.3491 41 1 5.6381 -1.6010 8.7670 42 1 6.9422 -1.1303 9.7160 43 1 7.8731 -3.3747 5.3148 44 1 8.8328 -1.9367 5.7486 45 1 7.9102 -1.8381 3.4056 46 1 7.3495 -0.4974 4.4339 47 1 3.5061 -2.6516 -0.0128 48 1 5.0460 -1.7638 -0.1110 49 1 3.6532 -1.5639 -2.2018 50 1 3.9875 0.0087 -1.4349 51 1 2.9819 -0.6351 -4.7817 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948016938.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:39 Heat of formation + Delta-G solvation = -78.538610 kcal Electronic energy + Delta-G solvation = -30386.430466 eV Core-core repulsion = 26319.666747 eV Total energy + Delta-G solvation = -4066.763719 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.63755 -40.83648 -39.38335 -38.01923 -36.09312 -35.03145 -34.24707 -33.64374 -32.74468 -31.87317 -31.12150 -28.06696 -27.22312 -26.38382 -24.30810 -23.83379 -23.20694 -22.12751 -21.33970 -20.88147 -20.40588 -19.40380 -18.38492 -17.95938 -17.81110 -17.22932 -16.79516 -16.47313 -16.21532 -15.82225 -15.66168 -15.48432 -15.30394 -15.18814 -14.90260 -14.69268 -14.53878 -14.47218 -14.13209 -13.79086 -13.37298 -13.31444 -12.95310 -12.87332 -12.69849 -12.68657 -12.58096 -12.33151 -12.26864 -12.09228 -11.83763 -11.80957 -11.70860 -11.63880 -11.47761 -11.33810 -11.23937 -10.70511 -10.66378 -10.54245 -9.95730 -9.58397 -8.62796 -7.82950 -5.30348 1.47689 1.49211 1.58244 1.69512 1.83814 2.12321 2.25425 2.53401 3.26983 3.33481 3.56987 3.63118 3.73231 3.80924 3.91915 4.07245 4.10695 4.28677 4.31739 4.32576 4.41973 4.44992 4.60977 4.63061 4.72484 4.74500 4.77613 4.82124 4.84974 4.86987 4.97981 5.00429 5.10267 5.14503 5.14596 5.19250 5.31431 5.40797 5.51099 5.51818 5.57338 5.62565 5.72655 5.73900 5.88084 6.03835 6.44352 6.67922 6.94360 7.17913 7.37960 7.63570 7.89983 8.43243 9.24297 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.027845 B = 0.002168 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.325441 B =12913.354889 C =13431.049937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.157 3.843 3 H 0.006 0.994 4 C -0.115 4.115 5 C 0.161 3.839 6 H 0.048 0.952 7 N -0.706 5.706 8 C 0.509 3.491 9 O -0.592 6.592 10 C -0.095 4.095 11 C -0.122 4.122 12 C 0.112 3.888 13 N -0.628 5.628 14 C 0.699 3.301 15 N -0.849 5.849 16 O -0.649 6.649 17 C 0.134 3.866 18 C -0.110 4.110 19 C -0.129 4.129 20 C 0.183 3.817 21 N -0.603 5.603 22 C -0.246 4.246 23 H 0.081 0.919 24 C -0.060 4.060 25 N -0.943 5.943 26 Si 0.964 3.036 27 H -0.287 1.287 28 H -0.300 1.300 29 H -0.264 1.264 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.037 0.963 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.416 0.584 36 H 0.131 0.869 37 H 0.055 0.945 38 H 0.114 0.886 39 H 0.103 0.897 40 H 0.108 0.892 41 H 0.412 0.588 42 H 0.419 0.581 43 H 0.094 0.906 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.044 0.956 47 H 0.065 0.935 48 H 0.041 0.959 49 H 0.053 0.947 50 H -0.018 1.018 51 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.622 -8.140 27.176 28.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.050 3.950 3 H 0.024 0.976 4 C -0.154 4.154 5 C 0.056 3.944 6 H 0.066 0.934 7 N -0.357 5.357 8 C 0.297 3.703 9 O -0.472 6.472 10 C -0.116 4.116 11 C -0.160 4.160 12 C -0.010 4.010 13 N -0.365 5.365 14 C 0.399 3.601 15 N -0.420 5.420 16 O -0.532 6.532 17 C 0.010 3.990 18 C -0.149 4.149 19 C -0.169 4.169 20 C 0.056 3.944 21 N -0.327 5.327 22 C -0.376 4.376 23 H 0.099 0.901 24 C -0.254 4.254 25 N -0.589 5.589 26 Si 0.793 3.207 27 H -0.214 1.214 28 H -0.227 1.227 29 H -0.189 1.189 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.056 0.944 33 H 0.098 0.902 34 H 0.109 0.891 35 H 0.254 0.746 36 H 0.149 0.851 37 H 0.074 0.926 38 H 0.132 0.868 39 H 0.121 0.879 40 H 0.126 0.874 41 H 0.246 0.754 42 H 0.252 0.748 43 H 0.112 0.888 44 H 0.091 0.909 45 H 0.090 0.910 46 H 0.063 0.937 47 H 0.083 0.917 48 H 0.060 0.940 49 H 0.071 0.929 50 H 0.000 1.000 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 0.659 -7.460 26.505 27.543 hybrid contribution -0.277 0.075 -1.256 1.288 sum 0.382 -7.385 25.249 26.310 Atomic orbital electron populations 1.21701 0.93771 1.01801 1.01069 1.20764 0.94772 0.92708 0.86713 0.97590 1.22225 0.92296 1.02301 0.98592 1.20603 0.94984 0.94939 0.83864 0.93360 1.46001 1.13610 1.48226 1.27906 1.21347 0.81481 0.81055 0.86431 1.90720 1.57782 1.39502 1.59237 1.21336 0.95956 1.02579 0.91750 1.21958 1.00403 1.00922 0.92753 1.21952 0.78608 1.01989 0.98452 1.47358 1.09641 1.67589 1.11935 1.16160 0.84469 0.77828 0.81665 1.42959 1.12090 1.75184 1.11740 1.90931 1.18776 1.59010 1.84447 1.21451 0.93422 1.00554 0.83523 1.21649 0.95232 1.00046 0.97950 1.22282 0.98782 0.99713 0.96101 1.20427 0.83737 0.95223 0.94983 1.44445 1.02477 1.65628 1.20105 1.19536 0.95828 1.35868 0.86404 0.90125 1.25925 0.99140 1.01135 0.99206 1.70208 1.26036 1.46211 1.16490 0.85318 0.77732 0.78856 0.78817 1.21372 1.22666 1.18897 0.92378 0.90376 0.94402 0.90211 0.89132 0.74613 0.85142 0.92613 0.86813 0.87868 0.87407 0.75417 0.74829 0.88812 0.90887 0.90977 0.93716 0.91667 0.94045 0.92886 1.00010 0.94505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.16 7.96 71.98 0.57 -3.58 16 2 C 0.16 6.03 3.51 45.12 0.16 6.18 16 3 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 4 C -0.11 -3.25 4.86 30.82 0.15 -3.10 16 5 C 0.16 5.15 2.41 45.02 0.11 5.26 16 6 H 0.05 1.89 7.58 -2.38 -0.02 1.87 16 7 N -0.71 -15.70 4.96 -442.40 -2.19 -17.90 16 8 C 0.51 12.81 7.12 87.66 0.62 13.43 16 9 O -0.59 -22.06 15.64 -3.03 -0.05 -22.11 16 10 C -0.10 -1.41 2.49 -11.52 -0.03 -1.43 16 11 C -0.12 -1.02 5.27 30.67 0.16 -0.86 16 12 C 0.11 0.54 6.39 86.36 0.55 1.09 16 13 N -0.63 -8.57 2.97 -836.91 -2.49 -11.06 16 14 C 0.70 12.90 8.57 179.06 1.53 14.44 16 15 N -0.85 -7.22 8.78 -184.75 -1.62 -8.85 16 16 O -0.65 -19.12 16.60 -4.00 -0.07 -19.19 16 17 C 0.13 2.17 6.44 86.36 0.56 2.73 16 18 C -0.11 -2.14 4.65 30.67 0.14 -1.99 16 19 C -0.13 -5.00 5.65 30.67 0.17 -4.83 16 20 C 0.18 9.15 5.28 86.36 0.46 9.61 16 21 N -0.60 -29.29 2.98 -674.40 -2.01 -31.30 16 22 C -0.25 -12.93 8.56 84.03 0.72 -12.21 16 23 H 0.08 3.99 6.25 -2.91 -0.02 3.97 16 24 C -0.06 -3.31 4.95 84.86 0.42 -2.89 16 25 N -0.94 -56.96 11.21 21.65 0.24 -56.71 16 26 Si 0.96 44.47 29.58 68.60 2.03 46.50 16 27 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 28 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 29 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 30 H 0.06 1.86 7.44 -2.39 -0.02 1.85 16 31 H 0.08 1.95 8.14 -2.39 -0.02 1.94 16 32 H 0.04 1.42 7.63 -2.39 -0.02 1.40 16 33 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 35 H 0.42 5.60 8.00 -92.71 -0.74 4.86 16 36 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.11 0.32 7.52 -2.38 -0.02 0.30 16 39 H 0.10 0.05 8.14 -2.39 -0.02 0.03 16 40 H 0.11 -0.05 5.65 -2.39 -0.01 -0.07 16 41 H 0.41 0.58 6.32 -92.71 -0.59 -0.01 16 42 H 0.42 2.95 8.93 -92.71 -0.83 2.12 16 43 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.07 1.58 7.00 -2.39 -0.02 1.56 16 45 H 0.07 1.58 8.07 -2.39 -0.02 1.56 16 46 H 0.04 1.13 8.13 -2.39 -0.02 1.11 16 47 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 48 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 49 H 0.05 3.00 6.13 -2.39 -0.01 2.99 16 50 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 51 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -84.80 390.67 -1.05 -85.85 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -1.19 Total: 12.93 kcal Atomic # 6 Polarization: 15.54 SS G_CDS: 6.30 Total: 21.84 kcal Atomic # 7 Polarization: -117.75 SS G_CDS: -8.07 Total: -125.82 kcal Atomic # 8 Polarization: -41.19 SS G_CDS: -0.11 Total: -41.30 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -84.80 -1.05 -85.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948016938.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.312 kcal (2) G-P(sol) polarization free energy of solvation -84.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds