Wall clock time and date at job start Tue Mar 31 2020 21:45:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.08999 * 109.45905 * 2 1
4 4 C 1.53047 * 109.45811 * 119.97311 * 2 1 3
5 5 C 1.53192 * 109.31092 * 181.39008 * 4 2 1
6 6 N 1.46927 * 108.77520 * 305.35816 * 5 4 2
7 7 C 1.36935 * 120.63553 * 233.59267 * 6 5 4
8 8 H 1.07999 * 120.00010 * 149.71163 * 7 6 5
9 9 C 1.38813 * 119.99628 * 329.98857 * 7 6 5
10 10 N 1.31613 * 119.99916 * 347.40049 * 9 7 6
11 11 Si 1.86793 * 119.99791 * 167.40872 * 9 7 6
12 12 H 1.48498 * 109.47491 * 59.99543 * 11 9 7
13 13 H 1.48504 * 109.47097 * 179.97438 * 11 9 7
14 14 H 1.48506 * 109.47117 * 299.99299 * 11 9 7
15 15 C 1.46939 * 118.73407 * 53.86150 * 6 5 4
16 16 C 1.53039 * 109.46011 * 240.03877 * 2 1 3
17 17 H 1.08999 * 109.49515 * 298.56570 * 16 2 1
18 18 N 1.46495 * 109.49624 * 58.63504 * 16 2 1
19 19 C 1.34782 * 119.99699 * 204.99963 * 18 16 2
20 20 O 1.21282 * 120.00143 * 359.97438 * 19 18 16
21 21 C 1.50697 * 119.99901 * 179.97438 * 19 18 16
22 22 C 1.53042 * 109.45957 * 300.02775 * 21 19 18
23 23 C 1.53198 * 109.31227 * 178.60229 * 22 21 19
24 24 N 1.46923 * 108.76528 * 54.65268 * 23 22 21
25 25 C 1.34776 * 120.63048 * 126.36200 * 24 23 22
26 26 N 1.34779 * 120.00171 * 5.34996 * 25 24 23
27 27 O 1.21587 * 120.00255 * 185.35038 * 25 24 23
28 28 C 1.46921 * 118.73932 * 306.38535 * 24 23 22
29 29 C 1.53037 * 109.46090 * 179.97438 * 21 19 18
30 30 H 1.09002 * 109.47293 * 300.02735 * 1 2 3
31 31 H 1.08997 * 109.46712 * 60.02737 * 1 2 3
32 32 H 1.08997 * 109.46754 * 180.02562 * 1 2 3
33 33 H 1.08993 * 109.49724 * 61.43250 * 4 2 1
34 34 H 1.09005 * 109.52395 * 301.35302 * 4 2 1
35 35 H 1.09001 * 109.58602 * 185.57801 * 5 4 2
36 36 H 1.08992 * 109.70598 * 65.21945 * 5 4 2
37 37 H 0.97009 * 119.99945 * 179.97438 * 10 9 7
38 38 H 1.09002 * 109.58039 * 65.92606 * 15 6 5
39 39 H 1.08997 * 109.58406 * 186.35002 * 15 6 5
40 40 H 0.96995 * 120.00511 * 24.99837 * 18 16 2
41 41 H 1.09000 * 109.46345 * 59.99643 * 21 19 18
42 42 H 1.09004 * 109.49418 * 298.56115 * 22 21 19
43 43 H 1.08996 * 109.49970 * 58.66429 * 22 21 19
44 44 H 1.08997 * 109.59548 * 294.86461 * 23 22 21
45 45 H 1.09001 * 109.70261 * 174.50358 * 23 22 21
46 46 H 0.97005 * 119.99459 * 355.08338 * 26 25 24
47 47 H 0.96996 * 120.00573 * 175.09151 * 26 25 24
48 48 H 1.09005 * 109.58946 * 293.81994 * 28 24 23
49 49 H 1.09005 * 109.70594 * 173.46443 * 28 24 23
50 50 H 1.08999 * 109.50010 * 301.33799 * 29 21 19
51 51 H 1.09004 * 109.49653 * 61.43286 * 29 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8931 1.0277 0.0000
4 6 2.0399 -0.7209 1.2501
5 6 3.5714 -0.6887 1.2643
6 7 4.0680 -1.2489 0.0000
7 6 4.9765 -2.2734 -0.0001
8 1 4.9817 -2.9904 -0.8077
9 6 5.8869 -2.3937 1.0408
10 7 6.0486 -1.4026 1.8915
11 14 6.8827 -3.9623 1.2340
12 1 7.7008 -4.1826 0.0144
13 1 7.7765 -3.8391 2.4135
14 1 5.9628 -5.1119 1.4274
15 6 3.5756 -0.6847 -1.2643
16 6 2.0399 -0.7206 -1.2501
17 1 1.6978 -1.7555 -1.2384
18 7 1.5251 -0.0489 -2.4459
19 6 1.3966 -0.7326 -3.6003
20 8 1.7077 -1.9038 -3.6492
21 6 0.8665 -0.0418 -4.8302
22 6 -0.5437 0.4836 -4.5519
23 6 -1.0657 1.2155 -5.7924
24 7 -0.9757 0.3116 -6.9472
25 6 -2.0570 0.0667 -7.7135
26 7 -3.2064 0.7343 -7.4902
27 8 -1.9957 -0.7564 -8.6063
28 6 0.3154 -0.3206 -7.2505
29 6 0.8220 -1.0350 -5.9936
30 1 -0.3634 0.5143 0.8897
31 1 -0.3632 0.5134 -0.8902
32 1 -0.3633 -1.0277 0.0005
33 1 1.6978 -1.7557 1.2382
34 1 1.6572 -0.2215 2.1402
35 1 3.9417 -1.2847 2.0984
36 1 3.9163 0.3399 1.3687
37 1 6.6846 -1.4868 2.6191
38 1 3.9189 0.3451 -1.3629
39 1 3.9488 -1.2780 -2.0990
40 1 1.2766 0.8879 -2.4069
41 1 1.5199 0.7915 -5.0888
42 1 -1.2036 -0.3518 -4.3177
43 1 -0.5153 1.1730 -3.7082
44 1 -0.4600 2.1031 -5.9750
45 1 -2.1043 1.5074 -5.6370
46 1 -3.2775 1.3381 -6.7343
47 1 -3.9624 0.6109 -8.0852
48 1 1.0338 0.4418 -7.5521
49 1 0.1902 -1.0438 -8.0564
50 1 1.8227 -1.4267 -6.1761
51 1 0.1491 -1.8559 -5.7456
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000968633092.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:45:15
Heat of formation + Delta-G solvation = -80.800535 kcal
Electronic energy + Delta-G solvation = -30700.482866 eV
Core-core repulsion = 26633.621063 eV
Total energy + Delta-G solvation = -4066.861803 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 1.14 seconds
Orbital eigenvalues (eV)
-41.64931 -40.87477 -39.36537 -37.97608 -36.17337 -35.02822 -34.52067 -33.42522
-33.00992 -31.86414 -30.49460 -28.94796 -27.05627 -25.83630 -24.32507 -24.00627
-22.79394 -22.59201 -21.37266 -20.91588 -20.37798 -19.37603 -18.73165 -18.03785
-17.82623 -17.17956 -16.69586 -16.47729 -16.24693 -15.80043 -15.57374 -15.35240
-15.29786 -15.26513 -14.92752 -14.69035 -14.46414 -14.29710 -14.09201 -13.86553
-13.51481 -13.36092 -13.17825 -13.09986 -12.87375 -12.75451 -12.63640 -12.32180
-12.26170 -12.03643 -11.97392 -11.80988 -11.64773 -11.63220 -11.39276 -11.28760
-11.23368 -10.70769 -10.66848 -10.59644 -10.04537 -9.57902 -8.65526 -7.90929
-5.40633 1.42553 1.44317 1.51676 1.71536 1.84090 2.12366 2.23987
2.49379 3.23278 3.27371 3.58142 3.69910 3.76230 3.79319 3.87221
4.03531 4.08827 4.14623 4.31964 4.32774 4.45830 4.47493 4.55863
4.61784 4.69193 4.75168 4.77161 4.82873 4.86446 4.95566 4.97940
4.99837 5.05711 5.13249 5.15616 5.23091 5.27344 5.32269 5.48212
5.49105 5.52172 5.61697 5.63271 5.79517 5.88612 6.04051 6.37527
6.69182 6.94954 7.12734 7.40465 7.63932 7.82088 8.31863 9.13487
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.020265 B = 0.002476 C = 0.002278
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1381.339278 B =11304.013896 C =12288.133009
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C -0.081 4.081
3 H 0.083 0.917
4 C -0.124 4.124
5 C 0.172 3.828
6 N -0.608 5.608
7 C -0.268 4.268
8 H 0.049 0.951
9 C -0.042 4.042
10 N -0.929 5.929
11 Si 0.965 3.035
12 H -0.279 1.279
13 H -0.285 1.285
14 H -0.281 1.281
15 C 0.144 3.856
16 C 0.151 3.849
17 H 0.049 0.951
18 N -0.702 5.702
19 C 0.509 3.491
20 O -0.592 6.592
21 C -0.095 4.095
22 C -0.121 4.121
23 C 0.112 3.888
24 N -0.627 5.627
25 C 0.699 3.301
26 N -0.848 5.848
27 O -0.650 6.650
28 C 0.134 3.866
29 C -0.110 4.110
30 H 0.071 0.929
31 H 0.076 0.924
32 H 0.037 0.963
33 H 0.041 0.959
34 H 0.082 0.918
35 H 0.053 0.947
36 H 0.006 0.994
37 H 0.253 0.747
38 H 0.024 0.976
39 H 0.026 0.974
40 H 0.416 0.584
41 H 0.131 0.869
42 H 0.056 0.944
43 H 0.115 0.885
44 H 0.103 0.897
45 H 0.109 0.891
46 H 0.412 0.588
47 H 0.419 0.581
48 H 0.094 0.906
49 H 0.072 0.928
50 H 0.070 0.930
51 H 0.044 0.956
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.330 14.930 -12.234 28.034
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C -0.101 4.101
3 H 0.102 0.898
4 C -0.164 4.164
5 C 0.047 3.953
6 N -0.332 5.332
7 C -0.399 4.399
8 H 0.067 0.933
9 C -0.238 4.238
10 N -0.574 5.574
11 Si 0.793 3.207
12 H -0.205 1.205
13 H -0.210 1.210
14 H -0.207 1.207
15 C 0.018 3.982
16 C 0.044 3.956
17 H 0.067 0.933
18 N -0.354 5.354
19 C 0.297 3.703
20 O -0.472 6.472
21 C -0.116 4.116
22 C -0.160 4.160
23 C -0.010 4.010
24 N -0.365 5.365
25 C 0.399 3.601
26 N -0.420 5.420
27 O -0.532 6.532
28 C 0.011 3.989
29 C -0.149 4.149
30 H 0.090 0.910
31 H 0.095 0.905
32 H 0.056 0.944
33 H 0.059 0.941
34 H 0.100 0.900
35 H 0.072 0.928
36 H 0.024 0.976
37 H 0.062 0.938
38 H 0.041 0.959
39 H 0.045 0.955
40 H 0.254 0.746
41 H 0.148 0.852
42 H 0.075 0.925
43 H 0.133 0.867
44 H 0.121 0.879
45 H 0.127 0.873
46 H 0.246 0.754
47 H 0.252 0.748
48 H 0.112 0.888
49 H 0.091 0.909
50 H 0.088 0.912
51 H 0.063 0.937
Dipole moment (debyes) X Y Z Total
from point charges -19.802 13.586 -12.640 27.138
hybrid contribution 0.799 -0.909 0.481 1.302
sum -19.003 12.677 -12.159 25.878
Atomic orbital electron populations
1.21770 0.92753 1.01473 1.03121 1.21224 0.97047 0.99353 0.92433
0.89829 1.22094 0.96738 0.99620 0.97943 1.20714 0.90591 0.95434
0.88544 1.44197 1.48542 1.39472 1.00971 1.19324 1.09259 1.03129
1.08172 0.93306 1.25776 0.98274 1.00363 0.99413 1.70113 1.37763
1.31400 1.18127 0.85388 0.78361 0.79769 0.77190 1.20494 1.21047
1.20666 1.21327 0.93140 0.95644 0.88137 1.21261 0.93403 0.96083
0.84894 0.93320 1.45856 1.65325 1.15019 1.09207 1.21354 0.76819
0.86641 0.85503 1.90734 1.51841 1.19237 1.85379 1.21335 0.99811
0.99548 0.90886 1.21958 0.92998 1.01282 0.99714 1.21958 1.03997
0.92231 0.82829 1.47347 1.08824 1.49560 1.30751 1.16157 0.81633
0.80772 0.81539 1.42956 1.13762 1.49806 1.35437 1.90930 1.84712
1.39595 1.37969 1.21434 0.83460 0.97599 0.96430 1.21646 1.01680
0.97415 0.94143 0.90980 0.90499 0.94350 0.94054 0.89968 0.92819
0.97594 0.93814 0.95857 0.95547 0.74616 0.85165 0.92534 0.86712
0.87869 0.87315 0.75399 0.74832 0.88840 0.90916 0.91180 0.93712
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.67 9.02 71.98 0.65 -2.02 16
2 C -0.08 -2.27 2.27 -10.76 -0.02 -2.30 16
3 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16
4 C -0.12 -4.41 5.36 30.67 0.16 -4.25 16
5 C 0.17 8.20 5.27 86.36 0.45 8.65 16
6 N -0.61 -31.71 2.98 -698.23 -2.08 -33.79 16
7 C -0.27 -15.72 9.59 84.03 0.81 -14.91 16
8 H 0.05 2.94 7.86 -2.91 -0.02 2.91 16
9 C -0.04 -2.44 5.01 84.86 0.43 -2.01 16
10 N -0.93 -55.11 11.06 21.65 0.24 -54.87 16
11 Si 0.97 46.63 29.57 68.60 2.03 48.66 16
12 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16
13 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16
14 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16
15 C 0.14 6.32 6.12 86.51 0.53 6.85 16
16 C 0.15 5.07 2.08 45.21 0.09 5.16 16
17 H 0.05 2.03 7.58 -2.39 -0.02 2.01 16
18 N -0.70 -16.48 4.25 -441.48 -1.88 -18.35 16
19 C 0.51 13.55 7.12 87.66 0.62 14.17 16
20 O -0.59 -23.32 15.64 -3.04 -0.05 -23.36 16
21 C -0.09 -1.50 2.49 -11.51 -0.03 -1.52 16
22 C -0.12 -1.06 5.27 30.67 0.16 -0.89 16
23 C 0.11 0.57 6.39 86.36 0.55 1.12 16
24 N -0.63 -8.89 2.97 -836.90 -2.49 -11.38 16
25 C 0.70 13.19 8.57 179.05 1.53 14.73 16
26 N -0.85 -7.43 8.78 -184.74 -1.62 -9.06 16
27 O -0.65 -19.47 16.60 -3.99 -0.07 -19.53 16
28 C 0.13 2.29 6.44 86.36 0.56 2.85 16
29 C -0.11 -2.27 4.65 30.67 0.14 -2.12 16
30 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16
31 H 0.08 1.09 7.35 -2.39 -0.02 1.07 16
32 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16
33 H 0.04 1.58 8.14 -2.39 -0.02 1.57 16
34 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16
35 H 0.05 2.93 6.06 -2.39 -0.01 2.92 16
36 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16
37 H 0.25 14.45 8.31 -92.70 -0.77 13.68 16
38 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16
39 H 0.03 1.28 7.93 -2.39 -0.02 1.26 16
40 H 0.42 5.95 7.71 -92.71 -0.71 5.23 16
41 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16
42 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16
43 H 0.11 0.32 7.53 -2.39 -0.02 0.30 16
44 H 0.10 0.08 8.14 -2.39 -0.02 0.06 16
45 H 0.11 -0.05 5.65 -2.39 -0.01 -0.06 16
46 H 0.41 0.64 6.32 -92.70 -0.59 0.05 16
47 H 0.42 3.05 8.93 -92.71 -0.83 2.22 16
48 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16
49 H 0.07 1.63 7.00 -2.38 -0.02 1.62 16
50 H 0.07 1.65 8.07 -2.39 -0.02 1.63 16
51 H 0.04 1.18 8.13 -2.38 -0.02 1.16 16
Total: -1.00 -86.97 392.82 -0.44 -87.42
By element:
Atomic # 1 Polarization: 11.95 SS G_CDS: -1.17 Total: 10.78 kcal
Atomic # 6 Polarization: 16.85 SS G_CDS: 6.64 Total: 23.49 kcal
Atomic # 7 Polarization: -119.62 SS G_CDS: -7.83 Total: -127.45 kcal
Atomic # 8 Polarization: -42.78 SS G_CDS: -0.11 Total: -42.90 kcal
Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal
Total: -86.97 -0.44 -87.42 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000968633092.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 6.617 kcal
(2) G-P(sol) polarization free energy of solvation -86.972 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.356 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.445 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.417 kcal
(6) G-S(sol) free energy of system = (1) + (5) -80.801 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.15 seconds