Wall clock time and date at job start Tue Mar 31 2020 21:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.58145 * 2 1 4 4 C 1.53187 * 109.59027 * 120.28321 * 2 1 3 5 5 H 1.09006 * 109.49415 * 54.58541 * 4 2 1 6 6 N 1.46497 * 109.50010 * 294.51822 * 4 2 1 7 7 C 1.34779 * 120.00127 * 154.99946 * 6 4 2 8 8 O 1.21279 * 120.00054 * 359.97438 * 7 6 4 9 9 C 1.50699 * 120.00087 * 180.02562 * 7 6 4 10 10 N 1.46897 * 109.47226 * 179.97438 * 9 7 6 11 11 C 1.47184 * 110.99831 * 170.00100 * 10 9 7 12 12 C 1.52980 * 108.73246 * 54.36684 * 11 10 9 13 13 N 1.46011 * 110.04286 * 50.29387 * 12 11 10 14 14 C 1.46500 * 118.54036 * 161.55888 * 13 12 11 15 15 C 1.33724 * 122.92351 * 341.84196 * 13 12 11 16 16 O 1.21281 * 118.62531 * 181.68886 * 15 13 12 17 17 C 1.46899 * 111.00171 * 292.89286 * 10 9 7 18 18 C 1.53042 * 109.31278 * 174.56528 * 4 2 1 19 19 C 1.53039 * 109.54185 * 298.63422 * 18 4 2 20 20 C 1.53196 * 109.31001 * 61.36254 * 19 18 4 21 21 N 1.46921 * 109.70441 * 239.64737 * 2 1 3 22 22 C 1.36941 * 120.63201 * 6.50624 * 21 2 1 23 23 H 1.07997 * 120.00158 * 330.19579 * 22 21 2 24 24 C 1.38814 * 119.99975 * 150.18914 * 22 21 2 25 25 N 1.31615 * 120.00047 * 344.48560 * 24 22 21 26 26 Si 1.86803 * 119.99894 * 164.48597 * 24 22 21 27 27 H 1.48500 * 109.47269 * 90.00102 * 26 24 22 28 28 H 1.48500 * 109.47124 * 210.00584 * 26 24 22 29 29 H 1.48508 * 109.46919 * 330.00084 * 26 24 22 30 30 H 1.09000 * 109.47057 * 299.70804 * 1 2 3 31 31 H 1.08993 * 109.47339 * 59.71851 * 1 2 3 32 32 H 1.09002 * 109.46850 * 179.71841 * 1 2 3 33 33 H 0.97000 * 119.99632 * 335.00159 * 6 4 2 34 34 H 1.09004 * 109.46911 * 59.99467 * 9 7 6 35 35 H 1.09000 * 109.47010 * 300.00196 * 9 7 6 36 36 H 1.09004 * 109.59884 * 294.59423 * 11 10 9 37 37 H 1.09001 * 109.72001 * 174.21793 * 11 10 9 38 38 H 1.08996 * 109.38063 * 290.11755 * 12 11 10 39 39 H 1.09002 * 109.28193 * 170.40243 * 12 11 10 40 40 H 1.08995 * 109.47357 * 90.00070 * 14 13 12 41 41 H 1.09000 * 109.47028 * 210.00022 * 14 13 12 42 42 H 1.09002 * 109.47030 * 329.99876 * 14 13 12 43 43 H 1.09002 * 109.38783 * 47.08564 * 17 10 9 44 44 H 1.08995 * 109.38646 * 166.88172 * 17 10 9 45 45 H 1.08999 * 109.46345 * 58.66028 * 18 4 2 46 46 H 1.09005 * 109.45664 * 178.61541 * 18 4 2 47 47 H 1.09002 * 109.49977 * 301.41927 * 19 18 4 48 48 H 1.08997 * 109.50021 * 181.31709 * 19 18 4 49 49 H 1.08994 * 109.58899 * 185.57834 * 20 19 18 50 50 H 1.09007 * 109.58385 * 65.15533 * 20 19 18 51 51 H 0.97008 * 119.99779 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0436 -0.7278 1.2463 5 1 1.6046 -1.7244 1.2923 6 7 1.6677 0.0280 2.4436 7 6 1.5443 -0.6034 3.6280 8 8 1.7441 -1.7973 3.7024 9 6 1.1570 0.1739 4.8595 10 7 1.0897 -0.7352 6.0114 11 6 0.9490 0.0164 7.2690 12 6 -0.2596 0.9470 7.1525 13 7 -1.4237 0.1995 6.6859 14 6 -2.7545 0.7766 6.8911 15 6 -1.3296 -0.9912 6.0844 16 8 -2.3460 -1.5298 5.6999 17 6 -0.0174 -1.6895 5.8649 18 6 3.5679 -0.8433 1.1728 19 6 3.9605 -1.6607 -0.0600 20 6 3.4685 -0.9435 -1.3212 21 7 2.0254 -0.6990 -1.1936 22 6 1.1584 -1.1151 -2.1685 23 1 0.1448 -1.3842 -1.9108 24 6 1.5826 -1.1911 -3.4881 25 7 2.6922 -0.5880 -3.8585 26 14 0.5783 -2.1494 -4.7382 27 1 -0.4169 -1.2467 -5.3705 28 1 1.4809 -2.6993 -5.7814 29 1 -0.1273 -3.2642 -4.0565 30 1 -0.3633 0.5093 0.8926 31 1 -0.3633 0.5182 -0.8874 32 1 -0.3633 -1.0277 -0.0051 33 1 1.5075 0.9828 2.3840 34 1 0.1825 0.6372 4.7052 35 1 1.9010 0.9475 5.0498 36 1 1.8487 0.6060 7.4453 37 1 0.7982 -0.6766 8.0968 38 1 -0.0348 1.7449 6.4448 39 1 -0.4758 1.3801 8.1292 40 1 -3.0212 1.3900 6.0305 41 1 -3.4843 -0.0248 7.0061 42 1 -2.7482 1.3941 7.7893 43 1 0.0023 -2.1154 4.8617 44 1 0.0932 -2.4875 6.5990 45 1 4.0046 0.1529 1.1021 46 1 3.9382 -1.3390 2.0702 47 1 3.5038 -2.6487 -0.0020 48 1 5.0450 -1.7624 -0.0989 49 1 3.6576 -1.5682 -2.1941 50 1 3.9920 0.0066 -1.4289 51 1 2.9888 -0.6414 -4.7806 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993519425.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:47:52 Heat of formation + Delta-G solvation = -25.745674 kcal Electronic energy + Delta-G solvation = -31168.399895 eV Core-core repulsion = 27103.925449 eV Total energy + Delta-G solvation = -4064.474445 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 2.53 seconds Orbital eigenvalues (eV) -41.23897 -39.63798 -37.95121 -37.18318 -35.28272 -34.26391 -32.58608 -31.70687 -30.44671 -29.94367 -28.80847 -27.26246 -26.07757 -25.07490 -24.90553 -23.08697 -21.97714 -20.68981 -20.34528 -19.52083 -18.72690 -17.57771 -17.08175 -16.68676 -16.41739 -16.23358 -15.81626 -15.53537 -15.18367 -14.78732 -14.67411 -14.07187 -13.76654 -13.74224 -13.58786 -13.43213 -13.29040 -13.20666 -12.99067 -12.77719 -12.55372 -12.47153 -12.00331 -11.81230 -11.71075 -11.64758 -11.53021 -11.10045 -10.91915 -10.73100 -10.65945 -10.55642 -10.28895 -10.12364 -10.03361 -9.87114 -9.57207 -9.34217 -9.16333 -8.70224 -8.60110 -8.44397 -6.66239 -5.79567 -3.24001 2.31169 2.51324 2.78126 3.07777 3.37883 3.45317 3.48466 3.67864 4.06259 4.39528 4.43188 4.49003 4.62034 4.81056 4.87254 4.92968 5.02779 5.07255 5.15990 5.21093 5.30282 5.32856 5.39813 5.46710 5.52638 5.59262 5.61878 5.80004 5.92735 5.97514 6.09130 6.21899 6.30445 6.35092 6.40552 6.45393 6.54264 6.63988 6.72839 6.75849 6.86447 6.99100 7.01069 7.07764 7.40175 7.66366 7.74309 7.81371 7.82427 8.41216 8.46982 9.20464 9.83037 10.39501 11.29174 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.018137 B = 0.002755 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.476292 B =10162.319161 C =10987.911781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.168 3.832 3 H 0.027 0.973 4 C 0.132 3.868 5 H 0.086 0.914 6 N -0.719 5.719 7 C 0.511 3.489 8 O -0.524 6.524 9 C 0.026 3.974 10 N -0.505 5.505 11 C 0.037 3.963 12 C 0.074 3.926 13 N -0.615 5.615 14 C 0.079 3.921 15 C 0.482 3.518 16 O -0.543 6.543 17 C 0.039 3.961 18 C -0.115 4.115 19 C -0.140 4.140 20 C 0.170 3.830 21 N -0.582 5.582 22 C -0.253 4.253 23 H 0.070 0.930 24 C 0.005 3.995 25 N -0.902 5.902 26 Si 0.901 3.099 27 H -0.287 1.287 28 H -0.290 1.290 29 H -0.278 1.278 30 H 0.036 0.964 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.395 0.605 34 H 0.065 0.935 35 H 0.109 0.891 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.055 0.945 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.130 0.870 44 H 0.115 0.885 45 H 0.053 0.947 46 H 0.050 0.950 47 H 0.056 0.944 48 H 0.051 0.949 49 H 0.087 0.913 50 H 0.019 0.981 51 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.492 7.290 23.949 25.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.060 3.940 3 H 0.044 0.956 4 C 0.027 3.973 5 H 0.104 0.896 6 N -0.370 5.370 7 C 0.295 3.705 8 O -0.400 6.400 9 C -0.105 4.105 10 N -0.228 5.228 11 C -0.091 4.091 12 C -0.051 4.051 13 N -0.350 5.350 14 C -0.064 4.064 15 C 0.269 3.731 16 O -0.418 6.418 17 C -0.092 4.092 18 C -0.154 4.154 19 C -0.180 4.180 20 C 0.045 3.955 21 N -0.305 5.305 22 C -0.382 4.382 23 H 0.087 0.913 24 C -0.194 4.194 25 N -0.546 5.546 26 Si 0.730 3.270 27 H -0.214 1.214 28 H -0.216 1.216 29 H -0.204 1.204 30 H 0.055 0.945 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.228 0.772 34 H 0.083 0.917 35 H 0.127 0.873 36 H 0.121 0.879 37 H 0.109 0.891 38 H 0.088 0.912 39 H 0.101 0.899 40 H 0.074 0.926 41 H 0.097 0.903 42 H 0.087 0.913 43 H 0.148 0.852 44 H 0.132 0.868 45 H 0.071 0.929 46 H 0.069 0.931 47 H 0.075 0.925 48 H 0.070 0.930 49 H 0.105 0.895 50 H 0.037 0.963 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.356 5.842 23.600 24.426 hybrid contribution -1.217 0.739 -0.666 1.572 sum -3.572 6.582 22.935 24.126 Atomic orbital electron populations 1.21809 0.95709 1.01737 1.00105 1.20553 0.93166 0.93530 0.86732 0.95587 1.21784 0.95071 0.96841 0.83642 0.89623 1.46118 1.70242 1.12171 1.08435 1.20260 0.77721 0.88300 0.84201 1.90692 1.49285 1.14790 1.85200 1.22144 1.02336 0.95596 0.90426 1.62171 1.43013 1.16571 1.01049 1.22678 0.97004 0.96689 0.92769 1.22225 0.86380 0.95688 1.00799 1.47472 1.07774 1.20158 1.59615 1.21692 0.84383 0.99253 1.01029 1.21550 0.93360 0.81013 0.77214 1.90734 1.37333 1.64290 1.49488 1.22659 0.83139 0.95702 1.07670 1.21749 0.95339 0.99973 0.98360 1.22185 0.99203 0.99752 0.96888 1.20826 0.83078 0.97159 0.94460 1.44024 1.03107 1.65102 1.18266 1.19151 0.95276 1.37766 0.86028 0.91278 1.25077 0.97881 0.99447 0.96954 1.70027 1.24113 1.43704 1.16768 0.86328 0.79379 0.80067 0.81197 1.21407 1.21566 1.20389 0.94457 0.91797 0.92652 0.77217 0.91705 0.87311 0.87921 0.89084 0.91196 0.89890 0.92619 0.90334 0.91283 0.85194 0.86756 0.92852 0.93101 0.92505 0.93015 0.89499 0.96308 0.93660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 7.85 37.16 0.29 -2.25 16 2 C 0.17 3.34 3.03 -67.60 -0.20 3.14 16 3 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 4 C 0.13 2.34 2.00 -67.81 -0.14 2.21 16 5 H 0.09 1.79 7.58 -51.93 -0.39 1.39 16 6 N -0.72 -9.85 4.57 -53.69 -0.25 -10.10 16 7 C 0.51 7.06 7.39 -10.98 -0.08 6.98 16 8 O -0.52 -9.32 14.18 5.56 0.08 -9.24 16 9 C 0.03 0.25 4.51 -4.98 -0.02 0.22 16 10 N -0.51 -4.81 4.75 -237.56 -1.13 -5.94 16 11 C 0.04 0.21 6.02 -3.68 -0.02 0.19 16 12 C 0.07 0.38 5.69 -4.32 -0.02 0.36 16 13 N -0.62 -5.41 3.04 -182.47 -0.55 -5.96 16 14 C 0.08 0.60 10.30 59.85 0.62 1.22 16 15 C 0.48 5.90 6.81 -11.67 -0.08 5.82 16 16 O -0.54 -8.93 16.33 5.56 0.09 -8.84 16 17 C 0.04 0.45 5.49 -5.19 -0.03 0.42 16 18 C -0.12 -2.04 5.46 -26.69 -0.15 -2.19 16 19 C -0.14 -2.76 6.08 -26.61 -0.16 -2.92 16 20 C 0.17 4.00 5.28 -3.71 -0.02 3.99 16 21 N -0.58 -14.13 2.99 -164.78 -0.49 -14.62 16 22 C -0.25 -6.75 8.59 -15.06 -0.13 -6.87 16 23 H 0.07 1.82 6.24 -52.49 -0.33 1.49 16 24 C 0.01 0.14 4.94 -17.43 -0.09 0.06 16 25 N -0.90 -25.75 11.23 55.49 0.62 -25.13 16 26 Si 0.90 21.63 29.58 -169.99 -5.03 16.60 16 27 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 28 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 29 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 30 H 0.04 0.57 7.78 -51.93 -0.40 0.17 16 31 H 0.06 1.27 7.67 -51.93 -0.40 0.88 16 32 H 0.05 1.11 7.41 -51.93 -0.38 0.72 16 33 H 0.39 4.31 8.60 -40.82 -0.35 3.96 16 34 H 0.07 0.59 6.23 -51.93 -0.32 0.26 16 35 H 0.11 0.72 8.08 -51.93 -0.42 0.30 16 36 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.09 0.47 8.08 -51.93 -0.42 0.05 16 38 H 0.07 0.31 7.10 -51.93 -0.37 -0.05 16 39 H 0.08 0.26 7.98 -51.93 -0.41 -0.16 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.08 0.74 7.26 -51.93 -0.38 0.36 16 42 H 0.07 0.33 7.92 -51.93 -0.41 -0.08 16 43 H 0.13 1.91 5.88 -51.93 -0.31 1.60 16 44 H 0.11 1.17 8.14 -51.93 -0.42 0.74 16 45 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 48 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 49 H 0.09 2.29 6.14 -51.93 -0.32 1.97 16 50 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 51 H 0.25 7.02 8.31 -40.82 -0.34 6.69 16 LS Contribution 388.97 15.07 5.86 5.86 Total: -1.00 -34.16 388.97 -9.58 -43.74 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -8.56 Total: 3.26 kcal Atomic # 6 Polarization: 10.59 SS G_CDS: -0.23 Total: 10.36 kcal Atomic # 7 Polarization: -59.95 SS G_CDS: -1.80 Total: -61.75 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: 0.17 Total: -18.08 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.16 -9.58 -43.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993519425.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.999 kcal (2) G-P(sol) polarization free energy of solvation -34.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.53 seconds