Wall clock time and date at job start Tue Mar 31 2020 21:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.58145 * 2 1 4 4 C 1.53187 * 109.59027 * 120.28321 * 2 1 3 5 5 H 1.09006 * 109.49415 * 54.58541 * 4 2 1 6 6 N 1.46497 * 109.50010 * 294.51822 * 4 2 1 7 7 C 1.34779 * 120.00127 * 154.99946 * 6 4 2 8 8 O 1.21279 * 120.00054 * 359.97438 * 7 6 4 9 9 C 1.50699 * 120.00087 * 180.02562 * 7 6 4 10 10 N 1.46897 * 109.47226 * 179.97438 * 9 7 6 11 11 C 1.47184 * 110.99831 * 170.00100 * 10 9 7 12 12 C 1.52980 * 108.73246 * 54.36684 * 11 10 9 13 13 N 1.46011 * 110.04286 * 50.29387 * 12 11 10 14 14 C 1.46500 * 118.54036 * 161.55888 * 13 12 11 15 15 C 1.33724 * 122.92351 * 341.84196 * 13 12 11 16 16 O 1.21281 * 118.62531 * 181.68886 * 15 13 12 17 17 C 1.46899 * 111.00171 * 292.89286 * 10 9 7 18 18 C 1.53042 * 109.31278 * 174.56528 * 4 2 1 19 19 C 1.53039 * 109.54185 * 298.63422 * 18 4 2 20 20 C 1.53196 * 109.31001 * 61.36254 * 19 18 4 21 21 N 1.46921 * 109.70441 * 239.64737 * 2 1 3 22 22 C 1.36941 * 120.63201 * 6.50624 * 21 2 1 23 23 H 1.07997 * 120.00158 * 330.19579 * 22 21 2 24 24 C 1.38814 * 119.99975 * 150.18914 * 22 21 2 25 25 N 1.31615 * 120.00047 * 344.48560 * 24 22 21 26 26 Si 1.86803 * 119.99894 * 164.48597 * 24 22 21 27 27 H 1.48500 * 109.47269 * 90.00102 * 26 24 22 28 28 H 1.48500 * 109.47124 * 210.00584 * 26 24 22 29 29 H 1.48508 * 109.46919 * 330.00084 * 26 24 22 30 30 H 1.09000 * 109.47057 * 299.70804 * 1 2 3 31 31 H 1.08993 * 109.47339 * 59.71851 * 1 2 3 32 32 H 1.09002 * 109.46850 * 179.71841 * 1 2 3 33 33 H 0.97000 * 119.99632 * 335.00159 * 6 4 2 34 34 H 1.09004 * 109.46911 * 59.99467 * 9 7 6 35 35 H 1.09000 * 109.47010 * 300.00196 * 9 7 6 36 36 H 1.09004 * 109.59884 * 294.59423 * 11 10 9 37 37 H 1.09001 * 109.72001 * 174.21793 * 11 10 9 38 38 H 1.08996 * 109.38063 * 290.11755 * 12 11 10 39 39 H 1.09002 * 109.28193 * 170.40243 * 12 11 10 40 40 H 1.08995 * 109.47357 * 90.00070 * 14 13 12 41 41 H 1.09000 * 109.47028 * 210.00022 * 14 13 12 42 42 H 1.09002 * 109.47030 * 329.99876 * 14 13 12 43 43 H 1.09002 * 109.38783 * 47.08564 * 17 10 9 44 44 H 1.08995 * 109.38646 * 166.88172 * 17 10 9 45 45 H 1.08999 * 109.46345 * 58.66028 * 18 4 2 46 46 H 1.09005 * 109.45664 * 178.61541 * 18 4 2 47 47 H 1.09002 * 109.49977 * 301.41927 * 19 18 4 48 48 H 1.08997 * 109.50021 * 181.31709 * 19 18 4 49 49 H 1.08994 * 109.58899 * 185.57834 * 20 19 18 50 50 H 1.09007 * 109.58385 * 65.15533 * 20 19 18 51 51 H 0.97008 * 119.99779 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0436 -0.7278 1.2463 5 1 1.6046 -1.7244 1.2923 6 7 1.6677 0.0280 2.4436 7 6 1.5443 -0.6034 3.6280 8 8 1.7441 -1.7973 3.7024 9 6 1.1570 0.1739 4.8595 10 7 1.0897 -0.7352 6.0114 11 6 0.9490 0.0164 7.2690 12 6 -0.2596 0.9470 7.1525 13 7 -1.4237 0.1995 6.6859 14 6 -2.7545 0.7766 6.8911 15 6 -1.3296 -0.9912 6.0844 16 8 -2.3460 -1.5298 5.6999 17 6 -0.0174 -1.6895 5.8649 18 6 3.5679 -0.8433 1.1728 19 6 3.9605 -1.6607 -0.0600 20 6 3.4685 -0.9435 -1.3212 21 7 2.0254 -0.6990 -1.1936 22 6 1.1584 -1.1151 -2.1685 23 1 0.1448 -1.3842 -1.9108 24 6 1.5826 -1.1911 -3.4881 25 7 2.6922 -0.5880 -3.8585 26 14 0.5783 -2.1494 -4.7382 27 1 -0.4169 -1.2467 -5.3705 28 1 1.4809 -2.6993 -5.7814 29 1 -0.1273 -3.2642 -4.0565 30 1 -0.3633 0.5093 0.8926 31 1 -0.3633 0.5182 -0.8874 32 1 -0.3633 -1.0277 -0.0051 33 1 1.5075 0.9828 2.3840 34 1 0.1825 0.6372 4.7052 35 1 1.9010 0.9475 5.0498 36 1 1.8487 0.6060 7.4453 37 1 0.7982 -0.6766 8.0968 38 1 -0.0348 1.7449 6.4448 39 1 -0.4758 1.3801 8.1292 40 1 -3.0212 1.3900 6.0305 41 1 -3.4843 -0.0248 7.0061 42 1 -2.7482 1.3941 7.7893 43 1 0.0023 -2.1154 4.8617 44 1 0.0932 -2.4875 6.5990 45 1 4.0046 0.1529 1.1021 46 1 3.9382 -1.3390 2.0702 47 1 3.5038 -2.6487 -0.0020 48 1 5.0450 -1.7624 -0.0989 49 1 3.6576 -1.5682 -2.1941 50 1 3.9920 0.0066 -1.4289 51 1 2.9888 -0.6414 -4.7806 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993519425.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:47:49 Heat of formation + Delta-G solvation = -52.012846 kcal Electronic energy + Delta-G solvation = -31169.538925 eV Core-core repulsion = 27103.925449 eV Total energy + Delta-G solvation = -4065.613475 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 2.27 seconds Orbital eigenvalues (eV) -42.04678 -40.85263 -39.32110 -38.20687 -36.12229 -35.72352 -34.25838 -33.42420 -31.44506 -30.96500 -29.97801 -28.19457 -27.52438 -26.81864 -25.69751 -24.13226 -23.24424 -22.32873 -21.51248 -21.07463 -19.63312 -18.50998 -18.19566 -17.85884 -17.46294 -17.29568 -17.08536 -16.73058 -16.36049 -15.87393 -15.77598 -15.54674 -15.51562 -14.92007 -14.87700 -14.54832 -14.44324 -14.19898 -14.06018 -13.97479 -13.53282 -13.35985 -13.23429 -13.06392 -12.82554 -12.77569 -12.71538 -12.60505 -12.52571 -12.36264 -12.16131 -12.02952 -11.82293 -11.74801 -11.61681 -11.58418 -11.16672 -10.73536 -10.53417 -9.94783 -9.85324 -9.35740 -8.64256 -7.86844 -5.32686 1.40729 1.44487 1.47271 1.55939 1.71210 1.84745 2.09805 2.52055 2.87113 3.28894 3.41922 3.59424 3.76378 3.86676 3.94132 4.00997 4.06089 4.19097 4.23468 4.24436 4.34756 4.37294 4.39211 4.53413 4.55898 4.59285 4.61974 4.69583 4.74738 4.76615 4.87720 4.88231 4.92330 4.99086 5.05895 5.14769 5.24583 5.29948 5.30720 5.42712 5.51893 5.61074 5.63288 5.69891 5.77208 5.84383 6.27314 6.41559 6.67774 6.97139 7.16199 7.37569 7.86546 8.37683 9.19935 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.018137 B = 0.002755 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.476292 B =10162.319161 C =10987.911781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.165 3.835 3 H 0.037 0.963 4 C 0.149 3.851 5 H 0.050 0.950 6 N -0.709 5.709 7 C 0.505 3.495 8 O -0.568 6.568 9 C 0.037 3.963 10 N -0.516 5.516 11 C 0.037 3.963 12 C 0.068 3.932 13 N -0.607 5.607 14 C 0.076 3.924 15 C 0.478 3.522 16 O -0.599 6.599 17 C 0.046 3.954 18 C -0.106 4.106 19 C -0.131 4.131 20 C 0.177 3.823 21 N -0.601 5.601 22 C -0.256 4.256 23 H 0.067 0.933 24 C -0.045 4.045 25 N -0.931 5.931 26 Si 0.958 3.042 27 H -0.283 1.283 28 H -0.292 1.292 29 H -0.276 1.276 30 H 0.072 0.928 31 H 0.048 0.952 32 H 0.034 0.966 33 H 0.412 0.588 34 H 0.074 0.926 35 H 0.150 0.850 36 H 0.134 0.866 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.116 0.884 40 H 0.055 0.945 41 H 0.053 0.947 42 H 0.106 0.894 43 H 0.092 0.908 44 H 0.119 0.881 45 H 0.069 0.931 46 H 0.056 0.944 47 H 0.040 0.960 48 H 0.073 0.927 49 H 0.052 0.948 50 H 0.007 0.993 51 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.142 9.825 26.985 28.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.059 3.941 3 H 0.054 0.946 4 C 0.042 3.958 5 H 0.069 0.931 6 N -0.362 5.362 7 C 0.292 3.708 8 O -0.446 6.446 9 C -0.093 4.093 10 N -0.239 5.239 11 C -0.090 4.090 12 C -0.054 4.054 13 N -0.340 5.340 14 C -0.066 4.066 15 C 0.265 3.735 16 O -0.480 6.480 17 C -0.085 4.085 18 C -0.144 4.144 19 C -0.170 4.170 20 C 0.051 3.949 21 N -0.325 5.325 22 C -0.386 4.386 23 H 0.085 0.915 24 C -0.241 4.241 25 N -0.577 5.577 26 Si 0.787 3.213 27 H -0.210 1.210 28 H -0.219 1.219 29 H -0.202 1.202 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.249 0.751 34 H 0.091 0.909 35 H 0.168 0.832 36 H 0.152 0.848 37 H 0.113 0.887 38 H 0.106 0.894 39 H 0.134 0.866 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.125 0.875 43 H 0.110 0.890 44 H 0.137 0.863 45 H 0.087 0.913 46 H 0.075 0.925 47 H 0.059 0.941 48 H 0.091 0.909 49 H 0.070 0.930 50 H 0.025 0.975 51 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -1.999 8.457 26.705 28.083 hybrid contribution -1.322 -0.005 -1.503 2.002 sum -3.321 8.451 25.202 26.788 Atomic orbital electron populations 1.21712 0.94904 1.00697 1.01107 1.20715 0.93874 0.93668 0.85884 0.94551 1.21217 0.94890 0.95272 0.84402 0.93143 1.45892 1.70180 1.12807 1.07299 1.21138 0.76404 0.88060 0.85166 1.90687 1.51012 1.17014 1.85880 1.22152 1.03767 0.95311 0.88109 1.62177 1.41851 1.17272 1.02648 1.22875 0.98616 0.96877 0.90637 1.22556 0.84585 0.95366 1.02941 1.47601 1.09557 1.19023 1.57815 1.21806 0.83338 0.98707 1.02782 1.21685 0.92693 0.81971 0.77135 1.90703 1.38940 1.66101 1.52251 1.22406 0.83888 0.96598 1.05604 1.21651 0.95171 1.00367 0.97242 1.22029 1.00303 0.98679 0.96033 1.20625 0.83082 0.96165 0.94989 1.44258 1.03147 1.65940 1.19153 1.19391 0.95503 1.36951 0.86745 0.91507 1.25727 0.99067 1.00708 0.98605 1.70155 1.25586 1.45238 1.16717 0.85420 0.78024 0.78852 0.79024 1.20967 1.21852 1.20169 0.90874 0.93306 0.94653 0.75107 0.90862 0.83193 0.84777 0.88693 0.89350 0.86631 0.92598 0.92822 0.87526 0.88952 0.86290 0.91262 0.92505 0.94104 0.90857 0.92983 0.97536 0.94157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.69 7.85 71.98 0.56 -4.13 16 2 C 0.17 6.50 3.03 44.97 0.14 6.64 16 3 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 4 C 0.15 5.20 2.00 45.07 0.09 5.29 16 5 H 0.05 2.15 7.58 -2.38 -0.02 2.13 16 6 N -0.71 -17.93 4.57 -442.17 -2.02 -19.95 16 7 C 0.51 13.09 7.39 87.66 0.65 13.74 16 8 O -0.57 -20.18 14.18 -3.03 -0.04 -20.23 16 9 C 0.04 0.56 4.51 85.56 0.39 0.95 16 10 N -0.52 -8.41 4.75 -905.49 -4.30 -12.72 16 11 C 0.04 0.25 6.02 86.24 0.52 0.77 16 12 C 0.07 0.37 5.69 86.47 0.49 0.86 16 13 N -0.61 -9.08 3.04 -850.20 -2.58 -11.67 16 14 C 0.08 0.99 10.30 127.77 1.32 2.30 16 15 C 0.48 11.49 6.81 87.68 0.60 12.08 16 16 O -0.60 -20.50 16.33 -3.03 -0.05 -20.55 16 17 C 0.05 1.05 5.49 85.42 0.47 1.52 16 18 C -0.11 -3.60 5.46 30.62 0.17 -3.43 16 19 C -0.13 -5.14 6.08 30.67 0.19 -4.95 16 20 C 0.18 8.51 5.28 86.36 0.46 8.97 16 21 N -0.60 -29.74 2.99 -675.23 -2.02 -31.76 16 22 C -0.26 -13.97 8.59 84.03 0.72 -13.25 16 23 H 0.07 3.61 6.24 -2.91 -0.02 3.59 16 24 C -0.05 -2.54 4.94 84.86 0.42 -2.12 16 25 N -0.93 -54.64 11.23 21.65 0.24 -54.39 16 26 Si 0.96 45.52 29.58 68.60 2.03 47.55 16 27 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 28 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 29 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 30 H 0.07 2.13 7.78 -2.39 -0.02 2.12 16 31 H 0.05 1.93 7.67 -2.39 -0.02 1.92 16 32 H 0.03 1.42 7.41 -2.39 -0.02 1.41 16 33 H 0.41 7.56 8.60 -92.71 -0.80 6.77 16 34 H 0.07 1.04 6.23 -2.39 -0.01 1.03 16 35 H 0.15 1.09 8.08 -2.39 -0.02 1.07 16 36 H 0.13 0.15 8.14 -2.38 -0.02 0.13 16 37 H 0.09 0.61 8.08 -2.39 -0.02 0.59 16 38 H 0.09 0.25 7.10 -2.39 -0.02 0.23 16 39 H 0.12 -0.01 7.98 -2.39 -0.02 -0.02 16 40 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.05 0.99 7.26 -2.39 -0.02 0.97 16 42 H 0.11 0.57 7.92 -2.39 -0.02 0.55 16 43 H 0.09 2.85 5.88 -2.39 -0.01 2.83 16 44 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 45 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 46 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 47 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 48 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 49 H 0.05 2.86 6.14 -2.39 -0.01 2.84 16 50 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16 51 H 0.25 14.22 8.31 -92.70 -0.77 13.45 16 Total: -1.00 -80.14 388.97 -1.44 -81.58 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: 0.13 Total: 16.88 kcal Atomic # 6 Polarization: 18.08 SS G_CDS: 7.17 Total: 25.25 kcal Atomic # 7 Polarization: -119.80 SS G_CDS: -10.68 Total: -130.48 kcal Atomic # 8 Polarization: -40.69 SS G_CDS: -0.09 Total: -40.78 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -80.14 -1.44 -81.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993519425.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.570 kcal (2) G-P(sol) polarization free energy of solvation -80.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.27 seconds