Wall clock time and date at job start Tue Mar 31 2020 21:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.70367 * 2 1 4 4 C 1.53193 * 109.58638 * 120.35578 * 2 1 3 5 5 H 1.09006 * 109.49892 * 294.40858 * 4 2 1 6 6 N 1.46508 * 109.49830 * 54.46664 * 4 2 1 7 7 C 1.34770 * 120.00175 * 204.93826 * 6 4 2 8 8 O 1.21277 * 120.00039 * 359.97438 * 7 6 4 9 9 C 1.50701 * 120.00220 * 180.28004 * 7 6 4 10 10 C 1.53041 * 109.45446 * 299.74925 * 9 7 6 11 11 C 1.53192 * 109.31275 * 178.60134 * 10 9 7 12 12 N 1.46928 * 108.76682 * 54.65155 * 11 10 9 13 13 C 1.34778 * 120.62929 * 126.36411 * 12 11 10 14 14 N 1.34774 * 120.00045 * 5.32723 * 13 12 11 15 15 O 1.21591 * 119.99898 * 185.33289 * 13 12 11 16 16 C 1.46923 * 118.73679 * 306.38867 * 12 11 10 17 17 C 1.53038 * 109.46241 * 179.69563 * 9 7 6 18 18 C 1.53035 * 109.34195 * 174.43616 * 4 2 1 19 19 C 1.53047 * 109.53787 * 298.61643 * 18 4 2 20 20 C 1.53195 * 109.30799 * 61.36539 * 19 18 4 21 21 N 1.46928 * 108.77871 * 305.36176 * 20 19 18 22 22 C 1.36927 * 120.63111 * 233.63223 * 21 20 19 23 23 H 1.08009 * 119.99883 * 149.99024 * 22 21 20 24 24 C 1.38811 * 120.00421 * 329.99192 * 22 21 20 25 25 N 1.31621 * 119.99879 * 345.21402 * 24 22 21 26 26 Si 1.86798 * 120.00268 * 165.21006 * 24 22 21 27 27 H 1.48497 * 109.47185 * 89.99895 * 26 24 22 28 28 H 1.48497 * 109.47369 * 210.00139 * 26 24 22 29 29 H 1.48503 * 109.47014 * 330.00242 * 26 24 22 30 30 H 1.09000 * 109.47308 * 299.64502 * 1 2 3 31 31 H 1.08997 * 109.46966 * 59.64216 * 1 2 3 32 32 H 1.08994 * 109.47259 * 179.64549 * 1 2 3 33 33 H 0.97007 * 119.99739 * 24.93737 * 6 4 2 34 34 H 1.08997 * 109.46196 * 59.71714 * 9 7 6 35 35 H 1.08997 * 109.50013 * 298.56521 * 10 9 7 36 36 H 1.09004 * 109.50437 * 58.66423 * 10 9 7 37 37 H 1.09000 * 109.59799 * 294.86571 * 11 10 9 38 38 H 1.09000 * 109.70296 * 174.50577 * 11 10 9 39 39 H 0.96998 * 120.00135 * 355.12952 * 14 13 12 40 40 H 0.96998 * 119.99875 * 175.12991 * 14 13 12 41 41 H 1.08992 * 109.58894 * 293.81115 * 16 12 11 42 42 H 1.09004 * 109.70208 * 173.45993 * 16 12 11 43 43 H 1.08994 * 109.49878 * 301.33501 * 17 9 7 44 44 H 1.09001 * 109.49890 * 61.43063 * 17 9 7 45 45 H 1.08998 * 109.46206 * 58.63536 * 18 4 2 46 46 H 1.09005 * 109.46251 * 178.61493 * 18 4 2 47 47 H 1.09001 * 109.49596 * 181.31283 * 19 18 4 48 48 H 1.08995 * 109.49875 * 301.41769 * 19 18 4 49 49 H 1.09001 * 109.58765 * 65.15026 * 20 19 18 50 50 H 1.09008 * 109.58480 * 185.57484 * 20 19 18 51 51 H 0.96998 * 119.99768 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0435 -0.7294 1.2454 5 1 1.7655 -0.1671 2.1369 6 7 1.4513 -2.0680 1.3072 7 6 1.3294 -2.6969 2.4929 8 8 1.7104 -2.1550 3.5087 9 6 0.7260 -4.0764 2.5557 10 6 -0.7059 -4.0314 2.0172 11 6 -1.3040 -5.4414 2.0499 12 7 -1.1894 -5.9719 3.4153 13 6 -2.2735 -6.4444 4.0617 14 7 -3.4553 -6.5330 3.4198 15 8 -2.1855 -6.7906 5.2239 16 6 0.1295 -5.9771 4.0627 17 6 0.7117 -4.5612 4.0072 18 6 3.5675 -0.8481 1.1710 19 6 3.9575 -1.6662 -0.0622 20 6 3.4663 -0.9476 -1.3229 21 7 2.0237 -0.7002 -1.1945 22 6 1.1554 -1.1143 -2.1689 23 1 0.1421 -1.3840 -1.9101 24 6 1.5774 -1.1875 -3.4893 25 7 2.6940 -0.5956 -3.8571 26 14 0.5608 -2.1262 -4.7442 27 1 -0.4241 -1.2078 -5.3701 28 1 1.4557 -2.6806 -5.7915 29 1 -0.1576 -3.2364 -4.0685 30 1 -0.3634 0.5083 0.8931 31 1 -0.3633 0.5194 -0.8867 32 1 -0.3633 -1.0276 -0.0064 33 1 1.1468 -2.5016 0.4946 34 1 1.3202 -4.7606 1.9501 35 1 -1.3071 -3.3665 2.6374 36 1 -0.6975 -3.6638 0.9911 37 1 -0.7588 -6.0859 1.3605 38 1 -2.3541 -5.4019 1.7602 39 1 -3.5432 -6.1917 2.5162 40 1 -4.2179 -6.9381 3.8616 41 1 0.7917 -6.6653 3.5375 42 1 0.0275 -6.2897 5.1019 43 1 1.7292 -4.5706 4.3976 44 1 0.0970 -3.8912 4.6084 45 1 4.0062 0.1472 1.1001 46 1 3.9373 -1.3450 2.0679 47 1 5.0419 -1.7700 -0.1018 48 1 3.4988 -2.6532 -0.0040 49 1 3.9916 0.0013 -1.4308 50 1 3.6536 -1.5727 -2.1961 51 1 2.9891 -0.6471 -4.7797 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994404248.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:47:27 Heat of formation + Delta-G solvation = -50.746015 kcal Electronic energy + Delta-G solvation = -31579.607563 eV Core-core repulsion = 27514.049021 eV Total energy + Delta-G solvation = -4065.558541 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.71799 -39.76816 -38.02767 -36.89819 -34.20984 -33.98005 -32.89755 -32.29257 -31.64577 -31.06298 -29.42239 -26.64144 -25.85353 -25.04841 -23.51537 -22.59318 -21.71908 -20.84047 -20.29334 -19.60695 -18.77353 -18.61728 -17.18965 -16.90742 -16.49233 -15.68499 -15.45668 -15.32456 -14.97463 -14.79588 -14.48630 -14.20122 -14.06415 -13.84325 -13.67762 -13.45093 -13.12067 -13.03151 -12.86269 -12.60882 -12.54139 -11.98498 -11.83105 -11.51630 -11.32179 -11.27996 -11.04855 -10.92858 -10.84343 -10.75929 -10.65315 -10.57782 -10.37277 -10.18065 -10.06927 -9.93636 -9.71921 -9.45907 -9.35297 -8.83306 -8.60078 -8.48003 -6.73187 -5.88313 -3.34469 2.55498 2.92899 2.98410 3.27667 3.33951 3.36432 3.57345 3.84761 4.37626 4.46244 4.52784 4.71065 4.89297 5.06413 5.13258 5.22728 5.24253 5.26663 5.34230 5.47323 5.53306 5.56332 5.58217 5.69263 5.70976 5.79384 5.91243 5.92181 6.07388 6.16996 6.19266 6.22417 6.29221 6.36936 6.49011 6.54913 6.63027 6.63548 6.67177 6.73367 6.89004 6.90797 7.07915 7.32108 7.60190 7.60263 7.69862 8.00085 8.35155 8.38516 8.61177 9.10965 9.73928 10.31952 11.19623 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.012644 B = 0.003458 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.901515 B = 8094.666773 C = 9486.764428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.159 3.841 3 H 0.038 0.962 4 C 0.134 3.866 5 H 0.074 0.926 6 N -0.699 5.699 7 C 0.512 3.488 8 O -0.554 6.554 9 C -0.106 4.106 10 C -0.127 4.127 11 C 0.113 3.887 12 N -0.627 5.627 13 C 0.710 3.290 14 N -0.870 5.870 15 O -0.597 6.597 16 C 0.128 3.872 17 C -0.112 4.112 18 C -0.121 4.121 19 C -0.139 4.139 20 C 0.172 3.828 21 N -0.586 5.586 22 C -0.257 4.257 23 H 0.069 0.931 24 C 0.007 3.993 25 N -0.899 5.899 26 Si 0.899 3.101 27 H -0.288 1.288 28 H -0.291 1.291 29 H -0.280 1.280 30 H 0.038 0.962 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.407 0.593 34 H 0.098 0.902 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.396 0.604 40 H 0.412 0.588 41 H 0.067 0.933 42 H 0.096 0.904 43 H 0.083 0.917 44 H 0.074 0.926 45 H 0.061 0.939 46 H 0.049 0.951 47 H 0.046 0.954 48 H 0.052 0.948 49 H 0.017 0.983 50 H 0.086 0.914 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.833 -8.946 9.167 14.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.052 3.948 3 H 0.056 0.944 4 C 0.027 3.973 5 H 0.092 0.908 6 N -0.350 5.350 7 C 0.298 3.702 8 O -0.432 6.432 9 C -0.128 4.128 10 C -0.166 4.166 11 C -0.010 4.010 12 N -0.366 5.366 13 C 0.410 3.590 14 N -0.440 5.440 15 O -0.475 6.475 16 C 0.005 3.995 17 C -0.151 4.151 18 C -0.159 4.159 19 C -0.178 4.178 20 C 0.046 3.954 21 N -0.310 5.310 22 C -0.387 4.387 23 H 0.087 0.913 24 C -0.192 4.192 25 N -0.543 5.543 26 Si 0.729 3.271 27 H -0.214 1.214 28 H -0.217 1.217 29 H -0.205 1.205 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.244 0.756 34 H 0.116 0.884 35 H 0.092 0.908 36 H 0.105 0.895 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.227 0.773 40 H 0.244 0.756 41 H 0.086 0.914 42 H 0.115 0.885 43 H 0.102 0.898 44 H 0.092 0.908 45 H 0.080 0.920 46 H 0.068 0.932 47 H 0.065 0.935 48 H 0.071 0.929 49 H 0.036 0.964 50 H 0.104 0.896 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.256 -8.719 10.445 14.975 hybrid contribution -0.860 -0.485 -1.647 1.920 sum -7.115 -9.204 8.798 14.586 Atomic orbital electron populations 1.21766 0.95681 1.01339 1.00386 1.20732 0.93293 0.93920 0.86877 0.94429 1.21515 0.92874 0.83231 0.99638 0.90777 1.46020 1.61377 1.18546 1.09042 1.20448 0.78765 0.87275 0.83716 1.90658 1.50491 1.67494 1.34595 1.21300 0.97064 0.95401 0.99033 1.21926 0.95004 0.96937 1.02719 1.21666 1.01349 0.94810 0.83198 1.47300 1.07815 1.65346 1.16088 1.15854 0.80642 0.78197 0.84355 1.43178 1.12135 1.68416 1.20243 1.90951 1.84467 1.56852 1.15237 1.21560 0.81517 0.96786 0.99646 1.21726 1.02578 0.95799 0.94950 1.21763 0.95571 1.00406 0.98190 1.22134 0.98884 0.99506 0.97316 1.20792 0.83176 0.97146 0.94265 1.44163 1.03082 1.64849 1.18857 1.19103 0.95201 1.38229 0.86121 0.91314 1.25118 0.97695 0.99377 0.97033 1.70015 1.23582 1.43862 1.16801 0.86364 0.79464 0.79795 0.81458 1.21449 1.21669 1.20507 0.94274 0.91841 0.92838 0.75610 0.88436 0.90786 0.89476 0.90606 0.90185 0.77292 0.75580 0.91447 0.88544 0.89824 0.90763 0.92033 0.93182 0.93529 0.92896 0.96449 0.89623 0.93597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.26 7.73 37.16 0.29 -1.98 16 2 C 0.16 2.97 3.20 -67.56 -0.22 2.76 16 3 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 4 C 0.13 2.26 2.32 -67.81 -0.16 2.10 16 5 H 0.07 1.29 7.58 -51.93 -0.39 0.90 16 6 N -0.70 -10.57 3.36 -53.69 -0.18 -10.75 16 7 C 0.51 7.53 7.12 -10.99 -0.08 7.45 16 8 O -0.55 -10.03 15.64 5.56 0.09 -9.94 16 9 C -0.11 -1.16 2.49 -91.73 -0.23 -1.39 16 10 C -0.13 -1.17 5.27 -26.61 -0.14 -1.31 16 11 C 0.11 0.84 6.39 -3.71 -0.02 0.82 16 12 N -0.63 -6.16 2.97 -178.50 -0.53 -6.69 16 13 C 0.71 8.13 8.57 -86.92 -0.74 7.39 16 14 N -0.87 -6.31 8.78 27.63 0.24 -6.06 16 15 O -0.60 -9.38 16.60 5.29 0.09 -9.30 16 16 C 0.13 1.29 6.44 -3.71 -0.02 1.26 16 17 C -0.11 -1.24 4.65 -26.61 -0.12 -1.36 16 18 C -0.12 -2.06 5.58 -26.69 -0.15 -2.21 16 19 C -0.14 -2.51 5.93 -26.61 -0.16 -2.67 16 20 C 0.17 3.75 5.28 -3.71 -0.02 3.73 16 21 N -0.59 -12.75 2.64 -164.71 -0.44 -13.18 16 22 C -0.26 -6.09 8.58 -15.06 -0.13 -6.22 16 23 H 0.07 1.56 6.23 -52.48 -0.33 1.23 16 24 C 0.01 0.18 4.96 -17.43 -0.09 0.09 16 25 N -0.90 -24.29 11.20 55.49 0.62 -23.66 16 26 Si 0.90 19.81 29.58 -169.99 -5.03 14.78 16 27 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 28 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 29 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 1.17 7.67 -51.93 -0.40 0.77 16 32 H 0.05 0.86 6.37 -51.93 -0.33 0.53 16 33 H 0.41 6.20 7.18 -40.82 -0.29 5.90 16 34 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.09 0.78 7.54 -51.93 -0.39 0.39 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.42 5.65 -51.93 -0.29 0.13 16 39 H 0.40 1.88 6.32 -40.82 -0.26 1.62 16 40 H 0.41 2.49 8.93 -40.82 -0.36 2.13 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.10 1.10 7.00 -51.93 -0.36 0.74 16 43 H 0.08 0.95 8.07 -51.93 -0.42 0.53 16 44 H 0.07 0.96 8.13 -51.93 -0.42 0.54 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 46 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 48 H 0.05 0.95 7.53 -51.93 -0.39 0.56 16 49 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.09 2.11 6.13 -51.92 -0.32 1.79 16 51 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 LS Contribution 386.65 15.07 5.83 5.83 Total: -1.00 -31.47 386.65 -9.63 -41.10 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -8.33 Total: 9.40 kcal Atomic # 6 Polarization: 10.47 SS G_CDS: -1.99 Total: 8.47 kcal Atomic # 7 Polarization: -60.06 SS G_CDS: -0.28 Total: -60.34 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: 0.17 Total: -19.24 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.03 Total: 14.78 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.47 -9.63 -41.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994404248.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.645 kcal (2) G-P(sol) polarization free energy of solvation -31.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds