Wall clock time and date at job start Tue Mar 31 2020 21:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.70367 * 2 1 4 4 C 1.53193 * 109.58638 * 120.35578 * 2 1 3 5 5 H 1.09006 * 109.49892 * 294.40858 * 4 2 1 6 6 N 1.46508 * 109.49830 * 54.46664 * 4 2 1 7 7 C 1.34770 * 120.00175 * 204.93826 * 6 4 2 8 8 O 1.21277 * 120.00039 * 359.97438 * 7 6 4 9 9 C 1.50701 * 120.00220 * 180.28004 * 7 6 4 10 10 C 1.53041 * 109.45446 * 299.74925 * 9 7 6 11 11 C 1.53192 * 109.31275 * 178.60134 * 10 9 7 12 12 N 1.46928 * 108.76682 * 54.65155 * 11 10 9 13 13 C 1.34778 * 120.62929 * 126.36411 * 12 11 10 14 14 N 1.34774 * 120.00045 * 5.32723 * 13 12 11 15 15 O 1.21591 * 119.99898 * 185.33289 * 13 12 11 16 16 C 1.46923 * 118.73679 * 306.38867 * 12 11 10 17 17 C 1.53038 * 109.46241 * 179.69563 * 9 7 6 18 18 C 1.53035 * 109.34195 * 174.43616 * 4 2 1 19 19 C 1.53047 * 109.53787 * 298.61643 * 18 4 2 20 20 C 1.53195 * 109.30799 * 61.36539 * 19 18 4 21 21 N 1.46928 * 108.77871 * 305.36176 * 20 19 18 22 22 C 1.36927 * 120.63111 * 233.63223 * 21 20 19 23 23 H 1.08009 * 119.99883 * 149.99024 * 22 21 20 24 24 C 1.38811 * 120.00421 * 329.99192 * 22 21 20 25 25 N 1.31621 * 119.99879 * 345.21402 * 24 22 21 26 26 Si 1.86798 * 120.00268 * 165.21006 * 24 22 21 27 27 H 1.48497 * 109.47185 * 89.99895 * 26 24 22 28 28 H 1.48497 * 109.47369 * 210.00139 * 26 24 22 29 29 H 1.48503 * 109.47014 * 330.00242 * 26 24 22 30 30 H 1.09000 * 109.47308 * 299.64502 * 1 2 3 31 31 H 1.08997 * 109.46966 * 59.64216 * 1 2 3 32 32 H 1.08994 * 109.47259 * 179.64549 * 1 2 3 33 33 H 0.97007 * 119.99739 * 24.93737 * 6 4 2 34 34 H 1.08997 * 109.46196 * 59.71714 * 9 7 6 35 35 H 1.08997 * 109.50013 * 298.56521 * 10 9 7 36 36 H 1.09004 * 109.50437 * 58.66423 * 10 9 7 37 37 H 1.09000 * 109.59799 * 294.86571 * 11 10 9 38 38 H 1.09000 * 109.70296 * 174.50577 * 11 10 9 39 39 H 0.96998 * 120.00135 * 355.12952 * 14 13 12 40 40 H 0.96998 * 119.99875 * 175.12991 * 14 13 12 41 41 H 1.08992 * 109.58894 * 293.81115 * 16 12 11 42 42 H 1.09004 * 109.70208 * 173.45993 * 16 12 11 43 43 H 1.08994 * 109.49878 * 301.33501 * 17 9 7 44 44 H 1.09001 * 109.49890 * 61.43063 * 17 9 7 45 45 H 1.08998 * 109.46206 * 58.63536 * 18 4 2 46 46 H 1.09005 * 109.46251 * 178.61493 * 18 4 2 47 47 H 1.09001 * 109.49596 * 181.31283 * 19 18 4 48 48 H 1.08995 * 109.49875 * 301.41769 * 19 18 4 49 49 H 1.09001 * 109.58765 * 65.15026 * 20 19 18 50 50 H 1.09008 * 109.58480 * 185.57484 * 20 19 18 51 51 H 0.96998 * 119.99768 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0435 -0.7294 1.2454 5 1 1.7655 -0.1671 2.1369 6 7 1.4513 -2.0680 1.3072 7 6 1.3294 -2.6969 2.4929 8 8 1.7104 -2.1550 3.5087 9 6 0.7260 -4.0764 2.5557 10 6 -0.7059 -4.0314 2.0172 11 6 -1.3040 -5.4414 2.0499 12 7 -1.1894 -5.9719 3.4153 13 6 -2.2735 -6.4444 4.0617 14 7 -3.4553 -6.5330 3.4198 15 8 -2.1855 -6.7906 5.2239 16 6 0.1295 -5.9771 4.0627 17 6 0.7117 -4.5612 4.0072 18 6 3.5675 -0.8481 1.1710 19 6 3.9575 -1.6662 -0.0622 20 6 3.4663 -0.9476 -1.3229 21 7 2.0237 -0.7002 -1.1945 22 6 1.1554 -1.1143 -2.1689 23 1 0.1421 -1.3840 -1.9101 24 6 1.5774 -1.1875 -3.4893 25 7 2.6940 -0.5956 -3.8571 26 14 0.5608 -2.1262 -4.7442 27 1 -0.4241 -1.2078 -5.3701 28 1 1.4557 -2.6806 -5.7915 29 1 -0.1576 -3.2364 -4.0685 30 1 -0.3634 0.5083 0.8931 31 1 -0.3633 0.5194 -0.8867 32 1 -0.3633 -1.0276 -0.0064 33 1 1.1468 -2.5016 0.4946 34 1 1.3202 -4.7606 1.9501 35 1 -1.3071 -3.3665 2.6374 36 1 -0.6975 -3.6638 0.9911 37 1 -0.7588 -6.0859 1.3605 38 1 -2.3541 -5.4019 1.7602 39 1 -3.5432 -6.1917 2.5162 40 1 -4.2179 -6.9381 3.8616 41 1 0.7917 -6.6653 3.5375 42 1 0.0275 -6.2897 5.1019 43 1 1.7292 -4.5706 4.3976 44 1 0.0970 -3.8912 4.6084 45 1 4.0062 0.1472 1.1001 46 1 3.9373 -1.3450 2.0679 47 1 5.0419 -1.7700 -0.1018 48 1 3.4988 -2.6532 -0.0040 49 1 3.9916 0.0013 -1.4308 50 1 3.6536 -1.5727 -2.1961 51 1 2.9891 -0.6471 -4.7797 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994404248.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:47:25 Heat of formation + Delta-G solvation = -72.100527 kcal Electronic energy + Delta-G solvation = -31580.533564 eV Core-core repulsion = 27514.049021 eV Total energy + Delta-G solvation = -4066.484542 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.65033 -40.91360 -39.36399 -37.93924 -35.56571 -35.01720 -34.11499 -33.57932 -33.09873 -31.85862 -30.97939 -27.99648 -27.00929 -26.67363 -24.29798 -23.89691 -22.95563 -22.32981 -21.40754 -20.44751 -20.23408 -19.40772 -18.21412 -18.12114 -17.84284 -17.05638 -16.51800 -16.46559 -16.27720 -15.81940 -15.64786 -15.38377 -15.32616 -15.17078 -14.79856 -14.62454 -14.48555 -14.26507 -14.15037 -13.77256 -13.53183 -13.32951 -12.97069 -12.84074 -12.78820 -12.68903 -12.37378 -12.30083 -12.26426 -12.14562 -11.89445 -11.80046 -11.65525 -11.59891 -11.32935 -11.29389 -10.99051 -10.70438 -10.64749 -10.45281 -9.83933 -9.58626 -8.56037 -7.76797 -5.24353 1.54391 1.56768 1.64195 1.76130 1.84744 2.12972 2.39645 2.58827 3.24811 3.40540 3.62493 3.65314 3.74899 3.83890 4.03951 4.09191 4.11543 4.23933 4.34448 4.34830 4.42724 4.45199 4.60915 4.61672 4.69569 4.73934 4.80254 4.84192 4.87979 4.97936 4.99902 5.02610 5.08930 5.14184 5.17302 5.27029 5.32208 5.38238 5.49355 5.51405 5.59144 5.71662 5.79531 5.84188 5.88004 6.03649 6.48854 6.78320 6.92210 7.23914 7.41727 7.62666 7.93824 8.48397 9.30127 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.012644 B = 0.003458 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.901515 B = 8094.666773 C = 9486.764428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.157 3.843 3 H 0.023 0.977 4 C 0.144 3.856 5 H 0.073 0.927 6 N -0.694 5.694 7 C 0.513 3.487 8 O -0.589 6.589 9 C -0.099 4.099 10 C -0.122 4.122 11 C 0.113 3.887 12 N -0.626 5.626 13 C 0.701 3.299 14 N -0.850 5.850 15 O -0.647 6.647 16 C 0.132 3.868 17 C -0.103 4.103 18 C -0.116 4.116 19 C -0.124 4.124 20 C 0.180 3.820 21 N -0.595 5.595 22 C -0.245 4.245 23 H 0.085 0.915 24 C -0.050 4.050 25 N -0.939 5.939 26 Si 0.958 3.042 27 H -0.294 1.294 28 H -0.305 1.305 29 H -0.257 1.257 30 H 0.059 0.941 31 H 0.046 0.954 32 H 0.064 0.936 33 H 0.410 0.590 34 H 0.119 0.881 35 H 0.061 0.939 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.106 0.894 39 H 0.411 0.589 40 H 0.419 0.581 41 H 0.089 0.911 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.049 0.951 45 H 0.060 0.940 46 H 0.053 0.947 47 H 0.058 0.942 48 H 0.058 0.942 49 H -0.011 1.011 50 H 0.056 0.944 51 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.528 -10.637 9.106 16.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.050 3.950 3 H 0.041 0.959 4 C 0.037 3.963 5 H 0.091 0.909 6 N -0.345 5.345 7 C 0.301 3.699 8 O -0.470 6.470 9 C -0.120 4.120 10 C -0.161 4.161 11 C -0.009 4.009 12 N -0.364 5.364 13 C 0.401 3.599 14 N -0.421 5.421 15 O -0.529 6.529 16 C 0.009 3.991 17 C -0.142 4.142 18 C -0.154 4.154 19 C -0.163 4.163 20 C 0.054 3.946 21 N -0.318 5.318 22 C -0.375 4.375 23 H 0.103 0.897 24 C -0.245 4.245 25 N -0.586 5.586 26 Si 0.788 3.212 27 H -0.221 1.221 28 H -0.233 1.233 29 H -0.181 1.181 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.247 0.753 34 H 0.137 0.863 35 H 0.080 0.920 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.124 0.876 39 H 0.245 0.755 40 H 0.252 0.748 41 H 0.108 0.892 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.068 0.932 45 H 0.079 0.921 46 H 0.072 0.928 47 H 0.077 0.923 48 H 0.077 0.923 49 H 0.007 0.993 50 H 0.074 0.926 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -8.001 -10.416 10.363 16.731 hybrid contribution -0.325 0.135 -1.578 1.617 sum -8.327 -10.281 8.785 15.881 Atomic orbital electron populations 1.21686 0.93968 1.02097 1.00607 1.20834 0.94689 0.93114 0.86342 0.95942 1.21236 0.92679 0.84127 0.98251 0.90918 1.45937 1.61280 1.17812 1.09439 1.21066 0.77843 0.88282 0.82715 1.90651 1.51971 1.68665 1.35712 1.21311 0.98418 0.93066 0.99226 1.21907 0.93390 0.98027 1.02769 1.21875 1.03299 0.93730 0.82030 1.47344 1.07224 1.64944 1.16874 1.16116 0.81727 0.78139 0.83933 1.42988 1.11005 1.67441 1.20692 1.90919 1.85361 1.59075 1.17586 1.21484 0.82173 0.96262 0.99222 1.21606 1.01806 0.95987 0.94794 1.21711 0.95831 1.00236 0.97640 1.21935 0.99573 0.99196 0.95570 1.20564 0.83453 0.95568 0.95020 1.44349 1.02846 1.65293 1.19362 1.19517 0.95745 1.36021 0.86186 0.89701 1.25821 0.98820 1.00913 0.98988 1.70188 1.25683 1.46254 1.16450 0.85412 0.77732 0.79025 0.79065 1.22141 1.23256 1.18077 0.92198 0.93518 0.91698 0.75281 0.86301 0.92006 0.88463 0.88589 0.87589 0.75537 0.74793 0.89249 0.90393 0.90421 0.93198 0.92133 0.92777 0.92333 0.92313 0.99284 0.92552 0.94621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.98 7.73 71.98 0.56 -3.43 16 2 C 0.16 5.69 3.20 44.96 0.14 5.83 16 3 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 4 C 0.14 4.63 2.32 45.07 0.10 4.73 16 5 H 0.07 2.42 7.58 -2.38 -0.02 2.40 16 6 N -0.69 -19.34 3.36 -442.16 -1.48 -20.82 16 7 C 0.51 14.02 7.12 87.66 0.62 14.64 16 8 O -0.59 -20.65 15.64 -3.02 -0.05 -20.70 16 9 C -0.10 -1.89 2.49 -11.51 -0.03 -1.92 16 10 C -0.12 -1.82 5.27 30.67 0.16 -1.65 16 11 C 0.11 1.22 6.39 86.36 0.55 1.77 16 12 N -0.63 -10.73 2.97 -836.91 -2.49 -13.22 16 13 C 0.70 14.83 8.57 179.05 1.53 16.37 16 14 N -0.85 -10.05 8.78 -184.74 -1.62 -11.67 16 15 O -0.65 -20.13 16.60 -4.00 -0.07 -20.20 16 16 C 0.13 2.43 6.44 86.36 0.56 2.99 16 17 C -0.10 -2.15 4.65 30.67 0.14 -2.00 16 18 C -0.12 -3.80 5.58 30.62 0.17 -3.63 16 19 C -0.12 -4.32 5.93 30.68 0.18 -4.14 16 20 C 0.18 7.92 5.28 86.36 0.46 8.38 16 21 N -0.59 -25.52 2.64 -675.04 -1.78 -27.30 16 22 C -0.24 -11.29 8.58 84.03 0.72 -10.57 16 23 H 0.09 3.61 6.23 -2.91 -0.02 3.59 16 24 C -0.05 -2.52 4.96 84.86 0.42 -2.10 16 25 N -0.94 -51.91 11.20 21.65 0.24 -51.67 16 26 Si 0.96 40.20 29.58 68.60 2.03 42.23 16 27 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 28 H -0.31 -13.45 7.11 99.48 0.71 -12.74 16 29 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 30 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.05 1.63 7.67 -2.39 -0.02 1.61 16 32 H 0.06 1.89 6.37 -2.39 -0.02 1.87 16 33 H 0.41 11.20 7.18 -92.70 -0.67 10.53 16 34 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.10 1.31 7.54 -2.39 -0.02 1.29 16 37 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.11 0.60 5.65 -2.39 -0.01 0.59 16 39 H 0.41 2.34 6.32 -92.71 -0.59 1.75 16 40 H 0.42 4.12 8.93 -92.71 -0.83 3.29 16 41 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.08 1.76 7.00 -2.38 -0.02 1.75 16 43 H 0.08 1.70 8.07 -2.39 -0.02 1.68 16 44 H 0.05 1.28 8.13 -2.39 -0.02 1.26 16 45 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 47 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 48 H 0.06 1.99 7.53 -2.39 -0.02 1.97 16 49 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 50 H 0.06 2.83 6.13 -2.38 -0.01 2.82 16 51 H 0.24 13.39 8.31 -92.71 -0.77 12.61 16 Total: -1.00 -70.10 386.65 -0.04 -70.13 By element: Atomic # 1 Polarization: 29.04 SS G_CDS: -1.11 Total: 27.93 kcal Atomic # 6 Polarization: 18.97 SS G_CDS: 6.30 Total: 25.27 kcal Atomic # 7 Polarization: -117.54 SS G_CDS: -7.14 Total: -124.67 kcal Atomic # 8 Polarization: -40.78 SS G_CDS: -0.11 Total: -40.89 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 2.03 Total: 42.23 kcal Total: -70.10 -0.04 -70.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994404248.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.968 kcal (2) G-P(sol) polarization free energy of solvation -70.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds