Wall clock time and date at job start Tue Mar 31 2020 22:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.46778 * 2 1 4 4 N 1.46499 * 109.47186 * 120.00031 * 2 1 3 5 5 C 1.34775 * 120.00058 * 274.99920 * 4 2 1 6 6 O 1.21279 * 120.00100 * 0.02562 * 5 4 2 7 7 C 1.50697 * 120.00178 * 180.02562 * 5 4 2 8 8 H 1.08996 * 110.33020 * 40.69745 * 7 5 4 9 9 C 1.54915 * 110.36661 * 278.46273 * 7 5 4 10 10 C 1.55156 * 101.58030 * 204.15267 * 9 7 5 11 11 C 1.54318 * 102.94558 * 35.50392 * 10 9 7 12 12 N 1.47190 * 107.29012 * 337.71322 * 11 10 9 13 13 C 1.34784 * 125.73105 * 179.04612 * 12 11 10 14 14 N 1.34769 * 120.00076 * 0.05597 * 13 12 11 15 15 O 1.21579 * 119.99360 * 180.02562 * 13 12 11 16 16 C 1.52994 * 109.46937 * 239.99895 * 2 1 3 17 17 C 1.53045 * 109.46140 * 60.00071 * 16 2 1 18 18 C 1.53187 * 109.31402 * 181.38787 * 17 16 2 19 19 N 1.46926 * 108.77188 * 305.36039 * 18 17 16 20 20 C 1.36939 * 120.62804 * 233.58509 * 19 18 17 21 21 H 1.08000 * 119.99985 * 29.49498 * 20 19 18 22 22 C 1.38810 * 119.99816 * 209.48626 * 20 19 18 23 23 N 1.31624 * 120.00096 * 198.98337 * 22 20 19 24 24 Si 1.86801 * 120.00168 * 19.25726 * 22 20 19 25 25 H 1.48502 * 109.47116 * 272.75599 * 24 22 20 26 26 H 1.48505 * 109.46945 * 32.75498 * 24 22 20 27 27 H 1.48503 * 109.47144 * 152.75200 * 24 22 20 28 28 C 1.46922 * 118.74031 * 53.86397 * 19 18 17 29 29 C 1.53035 * 109.46185 * 180.02562 * 16 2 1 30 30 H 1.09003 * 109.46776 * 299.99659 * 1 2 3 31 31 H 1.08994 * 109.46956 * 59.99816 * 1 2 3 32 32 H 1.09003 * 109.46993 * 180.02562 * 1 2 3 33 33 H 0.96995 * 119.99834 * 94.99833 * 4 2 1 34 34 H 1.09006 * 110.99940 * 322.22608 * 9 7 5 35 35 H 1.08996 * 111.00253 * 86.07193 * 9 7 5 36 36 H 1.09005 * 110.71437 * 153.86417 * 10 9 7 37 37 H 1.09004 * 110.71929 * 277.13112 * 10 9 7 38 38 H 1.08996 * 109.88439 * 97.22210 * 11 10 9 39 39 H 1.09001 * 109.88176 * 218.39357 * 11 10 9 40 40 H 0.97008 * 120.00432 * 359.97438 * 14 13 12 41 41 H 0.97002 * 120.00367 * 179.97438 * 14 13 12 42 42 H 1.09005 * 109.45102 * 300.03431 * 16 2 1 43 43 H 1.08999 * 109.50068 * 61.42770 * 17 16 2 44 44 H 1.09009 * 109.52401 * 301.35388 * 17 16 2 45 45 H 1.09010 * 109.58396 * 185.58024 * 18 17 16 46 46 H 1.08994 * 109.70816 * 65.22233 * 18 17 16 47 47 H 0.96998 * 120.00002 * 180.02562 * 23 22 20 48 48 H 1.09003 * 109.58469 * 65.92333 * 28 19 18 49 49 H 1.08994 * 109.58961 * 186.35069 * 28 19 18 50 50 H 1.09005 * 109.49788 * 298.56795 * 29 16 2 51 51 H 1.09002 * 109.49891 * 58.63170 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1472 -0.0183 2.3571 6 8 1.8583 1.1583 2.4117 7 6 2.6500 -0.7285 3.5874 8 1 3.4661 -1.4030 3.3283 9 6 1.4986 -1.5113 4.2665 10 6 2.0068 -1.6062 5.7294 11 6 2.7303 -0.2582 5.9321 12 7 3.0932 0.2483 4.5986 13 6 3.7245 1.4116 4.3435 14 7 4.0799 2.2224 5.3597 15 8 3.9738 1.7290 3.1967 16 6 2.0400 -0.7213 -1.2492 17 6 1.5297 0.0004 -2.4986 18 6 2.0134 -0.7443 -3.7469 19 7 3.4751 -0.8771 -3.6815 20 6 4.2614 -0.4519 -4.7189 21 1 3.9362 0.3681 -5.3421 22 6 5.4765 -1.0745 -4.9694 23 7 6.3920 -0.4645 -5.6921 24 14 5.8095 -2.7813 -4.2872 25 1 6.3674 -2.6661 -2.9158 26 1 4.5413 -3.5526 -4.2426 27 1 6.7845 -3.4821 -5.1611 28 6 4.0769 -1.4805 -2.4847 29 6 3.5703 -0.7217 -1.2487 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 2.2491 -1.6317 1.1526 34 1 0.5630 -0.9545 4.2132 35 1 1.3872 -2.5023 3.8265 36 1 1.1711 -1.7033 6.4224 37 1 2.7020 -2.4380 5.8430 38 1 2.0659 0.4479 6.4300 39 1 3.6307 -0.4068 6.5282 40 1 3.8810 1.9690 6.2747 41 1 4.5345 3.0593 5.1761 42 1 1.6760 -1.7487 -1.2491 43 1 1.9136 1.0205 -2.5119 44 1 0.4399 0.0220 -2.4873 45 1 1.7371 -0.1811 -4.6384 46 1 1.5578 -1.7338 -3.7841 47 1 7.2409 -0.8997 -5.8674 48 1 3.7860 -2.5290 -2.4185 49 1 5.1625 -1.4033 -2.5430 50 1 3.9345 0.3054 -1.2741 51 1 3.9337 -1.2143 -0.3468 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997446245.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:33 Heat of formation + Delta-G solvation = -38.863826 kcal Electronic energy + Delta-G solvation = -31180.362995 eV Core-core repulsion = 27115.319704 eV Total energy + Delta-G solvation = -4065.043291 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.89467 -39.29609 -38.03780 -37.32834 -35.33240 -33.76531 -32.85419 -31.50321 -31.35535 -30.39706 -29.93215 -28.83456 -25.40419 -24.53436 -23.25739 -22.22797 -22.00378 -21.39586 -20.40432 -19.91841 -19.25877 -18.44654 -17.63076 -16.78040 -16.64727 -16.02929 -15.73761 -15.19589 -14.90017 -14.80884 -14.68289 -14.13643 -13.91729 -13.72177 -13.65905 -13.49478 -13.34744 -13.23196 -12.84345 -12.72167 -12.55133 -12.31122 -12.06529 -12.00933 -11.85738 -11.60395 -11.36467 -11.32072 -11.10605 -10.71767 -10.39850 -10.37336 -10.21474 -10.05332 -9.89668 -9.74844 -9.63851 -9.53722 -9.36268 -8.91258 -8.74590 -8.51436 -6.86996 -5.88392 -3.25539 2.36535 2.81944 3.14758 3.35240 3.35673 3.50685 3.54396 3.93367 4.07618 4.24583 4.41789 4.58442 4.68532 4.77443 4.89420 4.97513 5.05980 5.12701 5.19589 5.23666 5.32486 5.35177 5.40688 5.45542 5.55653 5.63551 5.70451 5.78355 5.81144 5.93104 5.97197 6.14987 6.16283 6.23511 6.29958 6.46144 6.50140 6.57909 6.61100 6.67053 6.76731 6.77299 6.80517 6.83338 7.08786 7.63828 7.74846 8.06050 8.39433 8.40813 8.62217 9.02174 9.79104 10.18429 11.28048 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.015262 B = 0.002934 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.175336 B = 9542.529254 C =10018.110261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.148 3.852 3 H 0.087 0.913 4 N -0.722 5.722 5 C 0.512 3.488 6 O -0.507 6.507 7 C 0.135 3.865 8 H 0.094 0.906 9 C -0.122 4.122 10 C -0.128 4.128 11 C 0.101 3.899 12 N -0.625 5.625 13 C 0.724 3.276 14 N -0.868 5.868 15 O -0.558 6.558 16 C -0.084 4.084 17 C -0.128 4.128 18 C 0.149 3.851 19 N -0.607 5.607 20 C -0.258 4.258 21 H 0.084 0.916 22 C 0.022 3.978 23 N -0.911 5.911 24 Si 0.887 3.113 25 H -0.287 1.287 26 H -0.273 1.273 27 H -0.305 1.305 28 C 0.125 3.875 29 C -0.125 4.125 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.395 0.605 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.392 0.608 41 H 0.414 0.586 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.059 0.941 45 H 0.062 0.938 46 H 0.021 0.979 47 H 0.262 0.738 48 H 0.021 0.979 49 H 0.073 0.927 50 H 0.065 0.935 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.798 -4.064 28.173 30.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.044 3.956 3 H 0.105 0.895 4 N -0.374 5.374 5 C 0.295 3.705 6 O -0.380 6.380 7 C 0.027 3.973 8 H 0.112 0.888 9 C -0.160 4.160 10 C -0.166 4.166 11 C -0.023 4.023 12 N -0.366 5.366 13 C 0.424 3.576 14 N -0.436 5.436 15 O -0.432 6.432 16 C -0.103 4.103 17 C -0.167 4.167 18 C 0.023 3.977 19 N -0.331 5.331 20 C -0.386 4.386 21 H 0.102 0.898 22 C -0.177 4.177 23 N -0.554 5.554 24 Si 0.718 3.282 25 H -0.215 1.215 26 H -0.199 1.199 27 H -0.233 1.233 28 C -0.001 4.001 29 C -0.164 4.164 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.229 0.771 34 H 0.101 0.899 35 H 0.112 0.888 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.219 0.781 41 H 0.247 0.753 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.077 0.923 45 H 0.081 0.919 46 H 0.038 0.962 47 H 0.072 0.928 48 H 0.039 0.961 49 H 0.091 0.909 50 H 0.084 0.916 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -11.697 -3.006 27.237 29.794 hybrid contribution 0.618 -1.207 0.845 1.598 sum -11.078 -4.213 28.082 30.481 Atomic orbital electron populations 1.22192 0.95776 1.01640 1.02195 1.21056 0.93308 0.97796 0.83427 0.89523 1.45963 1.68134 1.13706 1.09617 1.20258 0.78492 0.87475 0.84254 1.90725 1.47854 1.15050 1.84396 1.21663 0.97454 0.89865 0.88356 0.88805 1.22768 0.97313 1.00704 0.95243 1.22608 1.00622 0.96580 0.96781 1.22029 0.99362 0.95998 0.84868 1.47273 1.62386 1.20235 1.06690 1.15370 0.78240 0.79061 0.84934 1.42928 1.67196 1.25289 1.08223 1.91073 1.59330 1.73504 1.19298 1.21314 0.96603 0.99073 0.93316 1.22081 0.99020 1.00344 0.95268 1.20916 0.84553 0.96727 0.95473 1.44363 1.00996 1.72246 1.15457 1.18932 1.00135 1.12082 1.07450 0.89844 1.25332 0.96673 0.98085 0.97594 1.69827 1.05839 1.37431 1.42348 0.86922 0.77339 0.86881 0.77068 1.21454 1.19862 1.23282 1.21459 0.98247 0.94087 0.86266 1.22093 0.94151 1.01996 0.98176 0.92827 0.91233 0.92792 0.77124 0.89902 0.88774 0.89480 0.89962 0.91531 0.91308 0.78074 0.75338 0.91501 0.91716 0.92285 0.91912 0.96155 0.92825 0.96093 0.90896 0.91619 0.93159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 9.13 37.16 0.34 -1.63 16 2 C 0.15 2.14 2.16 -67.93 -0.15 1.99 16 3 H 0.09 1.55 7.58 -51.93 -0.39 1.16 16 4 N -0.72 -9.16 4.36 -53.81 -0.23 -9.39 16 5 C 0.51 7.26 6.16 -10.99 -0.07 7.20 16 6 O -0.51 -9.49 13.56 -18.31 -0.25 -9.74 16 7 C 0.13 1.37 3.56 -67.57 -0.24 1.13 16 8 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 9 C -0.12 -0.75 6.49 -24.58 -0.16 -0.91 16 10 C -0.13 -0.51 6.95 -24.90 -0.17 -0.68 16 11 C 0.10 0.57 6.16 -2.97 -0.02 0.55 16 12 N -0.62 -6.59 3.14 -169.91 -0.53 -7.12 16 13 C 0.72 9.95 8.01 -86.92 -0.70 9.25 16 14 N -0.87 -7.67 8.83 27.63 0.24 -7.42 16 15 O -0.56 -10.86 14.62 -18.57 -0.27 -11.13 16 16 C -0.08 -1.30 1.79 -90.58 -0.16 -1.46 16 17 C -0.13 -2.12 5.04 -26.61 -0.13 -2.25 16 18 C 0.15 2.98 6.51 -3.71 -0.02 2.95 16 19 N -0.61 -14.81 2.74 -172.06 -0.47 -15.28 16 20 C -0.26 -7.43 10.03 -15.06 -0.15 -7.58 16 21 H 0.08 2.57 8.06 -52.49 -0.42 2.15 16 22 C 0.02 0.65 5.24 -17.43 -0.09 0.56 16 23 N -0.91 -28.77 13.97 55.49 0.78 -27.99 16 24 Si 0.89 22.99 24.35 -169.99 -4.14 18.85 16 25 H -0.29 -7.15 6.40 56.52 0.36 -6.79 16 26 H -0.27 -6.94 6.93 56.52 0.39 -6.55 16 27 H -0.30 -8.00 7.11 56.52 0.40 -7.59 16 28 C 0.12 2.80 4.23 -3.49 -0.01 2.78 16 29 C -0.12 -2.33 5.23 -26.39 -0.14 -2.47 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.83 6.40 -51.93 -0.33 0.50 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.40 3.98 8.39 -40.82 -0.34 3.63 16 34 H 0.08 0.60 8.05 -51.93 -0.42 0.18 16 35 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 38 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.39 2.07 7.82 -40.82 -0.32 1.75 16 41 H 0.41 3.37 8.93 -40.82 -0.36 3.00 16 42 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.06 0.82 6.36 -51.92 -0.33 0.49 16 45 H 0.06 1.26 7.93 -51.92 -0.41 0.85 16 46 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 48 H 0.02 0.46 7.21 -51.93 -0.37 0.08 16 49 H 0.07 1.82 4.51 -51.93 -0.23 1.59 16 50 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 51 H 0.05 0.84 7.40 -51.93 -0.38 0.45 16 LS Contribution 387.37 15.07 5.84 5.84 Total: -1.00 -39.62 387.37 -9.51 -49.13 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -8.59 Total: 4.85 kcal Atomic # 6 Polarization: 11.31 SS G_CDS: -1.88 Total: 9.43 kcal Atomic # 7 Polarization: -67.00 SS G_CDS: -0.22 Total: -67.22 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -0.52 Total: -20.87 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -4.14 Total: 18.85 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -39.62 -9.51 -49.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997446245.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.263 kcal (2) G-P(sol) polarization free energy of solvation -39.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds