Wall clock time and date at job start Tue Mar 31 2020 22:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.46778 * 2 1 4 4 N 1.46499 * 109.47186 * 120.00031 * 2 1 3 5 5 C 1.34775 * 120.00058 * 274.99920 * 4 2 1 6 6 O 1.21279 * 120.00100 * 0.02562 * 5 4 2 7 7 C 1.50697 * 120.00178 * 180.02562 * 5 4 2 8 8 H 1.08996 * 110.33020 * 40.69745 * 7 5 4 9 9 C 1.54915 * 110.36661 * 278.46273 * 7 5 4 10 10 C 1.55156 * 101.58030 * 204.15267 * 9 7 5 11 11 C 1.54318 * 102.94558 * 35.50392 * 10 9 7 12 12 N 1.47190 * 107.29012 * 337.71322 * 11 10 9 13 13 C 1.34784 * 125.73105 * 179.04612 * 12 11 10 14 14 N 1.34769 * 120.00076 * 0.05597 * 13 12 11 15 15 O 1.21579 * 119.99360 * 180.02562 * 13 12 11 16 16 C 1.52994 * 109.46937 * 239.99895 * 2 1 3 17 17 C 1.53045 * 109.46140 * 60.00071 * 16 2 1 18 18 C 1.53187 * 109.31402 * 181.38787 * 17 16 2 19 19 N 1.46926 * 108.77188 * 305.36039 * 18 17 16 20 20 C 1.36939 * 120.62804 * 233.58509 * 19 18 17 21 21 H 1.08000 * 119.99985 * 29.49498 * 20 19 18 22 22 C 1.38810 * 119.99816 * 209.48626 * 20 19 18 23 23 N 1.31624 * 120.00096 * 198.98337 * 22 20 19 24 24 Si 1.86801 * 120.00168 * 19.25726 * 22 20 19 25 25 H 1.48502 * 109.47116 * 272.75599 * 24 22 20 26 26 H 1.48505 * 109.46945 * 32.75498 * 24 22 20 27 27 H 1.48503 * 109.47144 * 152.75200 * 24 22 20 28 28 C 1.46922 * 118.74031 * 53.86397 * 19 18 17 29 29 C 1.53035 * 109.46185 * 180.02562 * 16 2 1 30 30 H 1.09003 * 109.46776 * 299.99659 * 1 2 3 31 31 H 1.08994 * 109.46956 * 59.99816 * 1 2 3 32 32 H 1.09003 * 109.46993 * 180.02562 * 1 2 3 33 33 H 0.96995 * 119.99834 * 94.99833 * 4 2 1 34 34 H 1.09006 * 110.99940 * 322.22608 * 9 7 5 35 35 H 1.08996 * 111.00253 * 86.07193 * 9 7 5 36 36 H 1.09005 * 110.71437 * 153.86417 * 10 9 7 37 37 H 1.09004 * 110.71929 * 277.13112 * 10 9 7 38 38 H 1.08996 * 109.88439 * 97.22210 * 11 10 9 39 39 H 1.09001 * 109.88176 * 218.39357 * 11 10 9 40 40 H 0.97008 * 120.00432 * 359.97438 * 14 13 12 41 41 H 0.97002 * 120.00367 * 179.97438 * 14 13 12 42 42 H 1.09005 * 109.45102 * 300.03431 * 16 2 1 43 43 H 1.08999 * 109.50068 * 61.42770 * 17 16 2 44 44 H 1.09009 * 109.52401 * 301.35388 * 17 16 2 45 45 H 1.09010 * 109.58396 * 185.58024 * 18 17 16 46 46 H 1.08994 * 109.70816 * 65.22233 * 18 17 16 47 47 H 0.96998 * 120.00002 * 180.02562 * 23 22 20 48 48 H 1.09003 * 109.58469 * 65.92333 * 28 19 18 49 49 H 1.08994 * 109.58961 * 186.35069 * 28 19 18 50 50 H 1.09005 * 109.49788 * 298.56795 * 29 16 2 51 51 H 1.09002 * 109.49891 * 58.63170 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1472 -0.0183 2.3571 6 8 1.8583 1.1583 2.4117 7 6 2.6500 -0.7285 3.5874 8 1 3.4661 -1.4030 3.3283 9 6 1.4986 -1.5113 4.2665 10 6 2.0068 -1.6062 5.7294 11 6 2.7303 -0.2582 5.9321 12 7 3.0932 0.2483 4.5986 13 6 3.7245 1.4116 4.3435 14 7 4.0799 2.2224 5.3597 15 8 3.9738 1.7290 3.1967 16 6 2.0400 -0.7213 -1.2492 17 6 1.5297 0.0004 -2.4986 18 6 2.0134 -0.7443 -3.7469 19 7 3.4751 -0.8771 -3.6815 20 6 4.2614 -0.4519 -4.7189 21 1 3.9362 0.3681 -5.3421 22 6 5.4765 -1.0745 -4.9694 23 7 6.3920 -0.4645 -5.6921 24 14 5.8095 -2.7813 -4.2872 25 1 6.3674 -2.6661 -2.9158 26 1 4.5413 -3.5526 -4.2426 27 1 6.7845 -3.4821 -5.1611 28 6 4.0769 -1.4805 -2.4847 29 6 3.5703 -0.7217 -1.2487 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 2.2491 -1.6317 1.1526 34 1 0.5630 -0.9545 4.2132 35 1 1.3872 -2.5023 3.8265 36 1 1.1711 -1.7033 6.4224 37 1 2.7020 -2.4380 5.8430 38 1 2.0659 0.4479 6.4300 39 1 3.6307 -0.4068 6.5282 40 1 3.8810 1.9690 6.2747 41 1 4.5345 3.0593 5.1761 42 1 1.6760 -1.7487 -1.2491 43 1 1.9136 1.0205 -2.5119 44 1 0.4399 0.0220 -2.4873 45 1 1.7371 -0.1811 -4.6384 46 1 1.5578 -1.7338 -3.7841 47 1 7.2409 -0.8997 -5.8674 48 1 3.7860 -2.5290 -2.4185 49 1 5.1625 -1.4033 -2.5430 50 1 3.9345 0.3054 -1.2741 51 1 3.9337 -1.2143 -0.3468 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997446245.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:32 Heat of formation + Delta-G solvation = -70.277643 kcal Electronic energy + Delta-G solvation = -31181.725201 eV Core-core repulsion = 27115.319704 eV Total energy + Delta-G solvation = -4066.405496 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.78104 -40.46533 -39.37899 -38.19984 -36.79633 -34.70649 -34.54683 -33.09652 -32.06931 -31.99800 -31.09811 -29.78439 -27.10473 -25.42804 -24.67573 -23.75807 -23.03069 -22.21468 -21.57087 -21.15464 -20.45554 -19.37931 -18.79555 -18.38840 -17.56055 -17.33489 -16.93105 -16.52811 -15.94209 -15.89308 -15.79996 -15.48309 -15.31802 -15.25451 -14.79477 -14.49538 -14.38540 -14.27830 -14.22207 -14.05864 -13.92509 -13.54452 -13.32229 -13.22719 -12.77261 -12.64636 -12.59380 -12.47831 -12.23571 -12.19250 -11.96505 -11.69284 -11.66103 -11.53594 -11.37275 -11.27997 -11.21180 -10.75335 -10.64880 -10.59888 -9.96039 -9.58676 -8.89100 -8.17268 -5.51136 1.29847 1.39654 1.50621 1.56824 1.85968 2.18005 2.38017 2.42192 3.05819 3.34086 3.37503 3.59130 3.63380 3.68088 3.86268 3.89410 3.98989 4.14161 4.21166 4.36009 4.37977 4.43859 4.47643 4.51466 4.59758 4.71589 4.74169 4.77836 4.86670 4.90026 4.91372 4.97396 5.02865 5.05965 5.08851 5.16133 5.19142 5.24016 5.25336 5.33586 5.38266 5.54857 5.66664 5.88097 5.91235 5.99517 6.12528 6.67331 6.93408 6.97755 7.40928 7.63104 7.71482 8.03755 9.03248 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.015262 B = 0.002934 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.175336 B = 9542.529254 C =10018.110261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.157 3.843 3 H 0.040 0.960 4 N -0.713 5.713 5 C 0.503 3.497 6 O -0.560 6.560 7 C 0.127 3.873 8 H 0.107 0.893 9 C -0.113 4.113 10 C -0.117 4.117 11 C 0.091 3.909 12 N -0.628 5.628 13 C 0.710 3.290 14 N -0.849 5.849 15 O -0.628 6.628 16 C -0.072 4.072 17 C -0.119 4.119 18 C 0.144 3.856 19 N -0.623 5.623 20 C -0.251 4.251 21 H 0.044 0.956 22 C -0.042 4.042 23 N -0.963 5.963 24 Si 0.957 3.043 25 H -0.272 1.272 26 H -0.255 1.255 27 H -0.311 1.311 28 C 0.121 3.879 29 C -0.116 4.116 30 H 0.041 0.959 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.412 0.588 34 H 0.069 0.931 35 H 0.122 0.878 36 H 0.109 0.891 37 H 0.100 0.900 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.411 0.589 41 H 0.417 0.583 42 H 0.100 0.900 43 H 0.036 0.964 44 H 0.098 0.902 45 H 0.051 0.949 46 H 0.047 0.953 47 H 0.261 0.739 48 H 0.046 0.954 49 H 0.042 0.958 50 H 0.027 0.973 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.999 -7.911 31.814 35.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.052 3.948 3 H 0.059 0.941 4 N -0.366 5.366 5 C 0.289 3.711 6 O -0.437 6.437 7 C 0.019 3.981 8 H 0.125 0.875 9 C -0.151 4.151 10 C -0.154 4.154 11 C -0.031 4.031 12 N -0.368 5.368 13 C 0.410 3.590 14 N -0.419 5.419 15 O -0.508 6.508 16 C -0.091 4.091 17 C -0.159 4.159 18 C 0.019 3.981 19 N -0.348 5.348 20 C -0.381 4.381 21 H 0.062 0.938 22 C -0.236 4.236 23 N -0.610 5.610 24 Si 0.785 3.215 25 H -0.198 1.198 26 H -0.179 1.179 27 H -0.239 1.239 28 C -0.004 4.004 29 C -0.155 4.155 30 H 0.060 0.940 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.248 0.752 34 H 0.088 0.912 35 H 0.140 0.860 36 H 0.127 0.873 37 H 0.119 0.881 38 H 0.093 0.907 39 H 0.108 0.892 40 H 0.242 0.758 41 H 0.249 0.751 42 H 0.118 0.882 43 H 0.055 0.945 44 H 0.116 0.884 45 H 0.069 0.931 46 H 0.065 0.935 47 H 0.070 0.930 48 H 0.064 0.936 49 H 0.061 0.939 50 H 0.046 0.954 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.955 -6.914 30.986 34.680 hybrid contribution 1.271 0.126 -0.262 1.303 sum -12.684 -6.788 30.725 33.926 Atomic orbital electron populations 1.22098 0.93507 1.03303 1.01864 1.20768 0.94891 0.95407 0.83728 0.94140 1.45856 1.67663 1.14352 1.08765 1.21077 0.77413 0.87048 0.85547 1.90699 1.50143 1.17492 1.85337 1.21943 0.99336 0.89776 0.87004 0.87536 1.22815 0.94921 1.00993 0.96411 1.22657 1.01440 0.95824 0.95493 1.22399 1.00830 0.97219 0.82618 1.47417 1.61196 1.19331 1.08847 1.15784 0.78373 0.80171 0.84650 1.42720 1.66100 1.24641 1.08407 1.91019 1.62175 1.75349 1.22209 1.21234 0.94012 1.00753 0.93131 1.21989 1.01223 0.98365 0.94284 1.21131 0.81984 0.98271 0.96693 1.44509 1.02669 1.72545 1.15067 1.18864 1.00654 1.10746 1.07864 0.93845 1.26069 0.96533 1.02122 0.98898 1.69985 1.06535 1.39206 1.45232 0.85784 0.77667 0.81220 0.76814 1.19832 1.17924 1.23943 1.21528 0.96601 0.95567 0.86682 1.21959 0.96674 0.99365 0.97494 0.94000 0.90816 0.89948 0.75171 0.91187 0.85961 0.87274 0.88147 0.90715 0.89234 0.75822 0.75073 0.88185 0.94523 0.88423 0.93075 0.93498 0.93007 0.93637 0.93925 0.95447 0.90757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.31 9.13 71.98 0.66 -2.65 16 2 C 0.16 4.35 2.16 44.99 0.10 4.45 16 3 H 0.04 1.52 7.58 -2.39 -0.02 1.50 16 4 N -0.71 -16.85 4.36 -442.54 -1.93 -18.78 16 5 C 0.50 14.05 6.16 87.66 0.54 14.59 16 6 O -0.56 -21.74 13.56 19.79 0.27 -21.47 16 7 C 0.13 2.34 3.56 44.72 0.16 2.50 16 8 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 9 C -0.11 -0.96 6.49 31.99 0.21 -0.75 16 10 C -0.12 -0.39 6.95 31.78 0.22 -0.17 16 11 C 0.09 0.73 6.16 86.69 0.53 1.27 16 12 N -0.63 -12.36 3.14 -809.72 -2.55 -14.91 16 13 C 0.71 19.69 8.01 179.05 1.43 21.12 16 14 N -0.85 -14.63 8.83 -184.76 -1.63 -16.27 16 15 O -0.63 -25.71 14.62 18.85 0.28 -25.44 16 16 C -0.07 -2.08 1.79 -10.77 -0.02 -2.09 16 17 C -0.12 -3.79 5.04 30.67 0.15 -3.63 16 18 C 0.14 5.54 6.51 86.36 0.56 6.10 16 19 N -0.62 -30.36 2.74 -698.27 -1.91 -32.27 16 20 C -0.25 -15.03 10.03 84.03 0.84 -14.19 16 21 H 0.04 2.86 8.06 -2.91 -0.02 2.84 16 22 C -0.04 -2.57 5.24 84.86 0.44 -2.13 16 23 N -0.96 -63.41 13.97 21.65 0.30 -63.11 16 24 Si 0.96 47.81 24.35 68.60 1.67 49.49 16 25 H -0.27 -12.81 6.40 99.48 0.64 -12.17 16 26 H -0.26 -11.87 6.93 99.48 0.69 -11.18 16 27 H -0.31 -15.70 7.11 99.48 0.71 -15.00 16 28 C 0.12 5.24 4.23 86.51 0.37 5.61 16 29 C -0.12 -4.21 5.23 30.82 0.16 -4.05 16 30 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.07 1.56 6.40 -2.39 -0.02 1.54 16 32 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.41 6.84 8.39 -92.71 -0.78 6.06 16 34 H 0.07 0.81 8.05 -2.38 -0.02 0.79 16 35 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 36 H 0.11 -0.03 8.14 -2.38 -0.02 -0.05 16 37 H 0.10 0.05 8.14 -2.38 -0.02 0.03 16 38 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 40 H 0.41 3.67 7.82 -92.70 -0.73 2.95 16 41 H 0.42 6.85 8.93 -92.71 -0.83 6.03 16 42 H 0.10 2.33 8.14 -2.38 -0.02 2.31 16 43 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.10 2.38 6.36 -2.38 -0.02 2.37 16 45 H 0.05 2.05 7.93 -2.38 -0.02 2.04 16 46 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 47 H 0.26 16.27 8.31 -92.71 -0.77 15.50 16 48 H 0.05 1.78 7.21 -2.39 -0.02 1.77 16 49 H 0.04 2.10 4.51 -2.39 -0.01 2.09 16 50 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 51 H 0.07 2.33 7.40 -2.39 -0.02 2.31 16 Total: -1.00 -95.15 387.37 -0.60 -95.75 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: -1.46 Total: 21.04 kcal Atomic # 6 Polarization: 19.61 SS G_CDS: 6.36 Total: 25.97 kcal Atomic # 7 Polarization: -137.61 SS G_CDS: -7.72 Total: -145.33 kcal Atomic # 8 Polarization: -47.45 SS G_CDS: 0.54 Total: -46.91 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 1.67 Total: 49.49 kcal Total: -95.15 -0.60 -95.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997446245.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.473 kcal (2) G-P(sol) polarization free energy of solvation -95.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds