Wall clock time and date at job start Tue Mar 31 2020 21:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.50189 * 2 1 4 4 C 1.53191 * 109.52571 * 120.08217 * 2 1 3 5 5 N 1.46929 * 108.77644 * 174.60029 * 4 2 1 6 6 C 1.34777 * 120.63191 * 126.41617 * 5 4 2 7 7 O 1.21280 * 119.99672 * 354.59351 * 6 5 4 8 8 C 1.50697 * 119.99842 * 174.59980 * 6 5 4 9 9 C 1.53043 * 109.45518 * 214.75445 * 8 6 5 10 10 C 1.53196 * 109.31273 * 178.60339 * 9 8 6 11 11 N 1.46925 * 108.76665 * 54.65013 * 10 9 8 12 12 C 1.34771 * 120.62948 * 126.41094 * 11 10 9 13 13 N 1.34780 * 120.00337 * 5.22830 * 12 11 10 14 14 O 1.21583 * 120.00079 * 185.23301 * 12 11 10 15 15 C 1.46930 * 118.73669 * 306.38530 * 11 10 9 16 16 C 1.53035 * 109.46434 * 94.69990 * 8 6 5 17 17 C 1.46926 * 118.73679 * 306.39153 * 5 4 2 18 18 C 1.53192 * 108.77653 * 53.61033 * 17 5 4 19 19 C 1.53039 * 109.31254 * 305.36023 * 18 17 5 20 20 H 1.08994 * 109.44852 * 181.37467 * 19 18 17 21 21 N 1.46498 * 109.46377 * 301.34671 * 19 18 17 22 22 C 1.36933 * 120.00076 * 275.06669 * 21 19 18 23 23 H 1.08010 * 119.99599 * 359.97438 * 22 21 19 24 24 C 1.38807 * 120.00428 * 179.97438 * 22 21 19 25 25 N 1.31626 * 119.99831 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00286 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47008 * 179.97438 * 26 24 22 28 28 H 1.48501 * 109.46886 * 299.99588 * 26 24 22 29 29 H 1.48500 * 109.47189 * 59.99843 * 26 24 22 30 30 H 1.08994 * 109.47577 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46904 * 300.06439 * 1 2 3 32 32 H 1.09002 * 109.47028 * 60.06074 * 1 2 3 33 33 H 1.08999 * 109.58882 * 294.38736 * 4 2 1 34 34 H 1.09002 * 109.58578 * 54.81480 * 4 2 1 35 35 H 1.09000 * 109.46205 * 334.71881 * 8 6 5 36 36 H 1.09000 * 109.49540 * 298.56439 * 9 8 6 37 37 H 1.09000 * 109.50375 * 58.65881 * 9 8 6 38 38 H 1.09004 * 109.59307 * 294.86214 * 10 9 8 39 39 H 1.08998 * 109.70332 * 174.50532 * 10 9 8 40 40 H 0.97002 * 119.99368 * 355.03603 * 13 12 11 41 41 H 0.96995 * 120.00117 * 175.03114 * 13 12 11 42 42 H 1.08994 * 109.59102 * 293.81929 * 15 11 10 43 43 H 1.09002 * 109.70043 * 173.46583 * 15 11 10 44 44 H 1.09006 * 109.49274 * 301.33201 * 16 8 6 45 45 H 1.08998 * 109.49585 * 61.39720 * 16 8 6 46 46 H 1.09007 * 109.58570 * 173.39839 * 17 5 4 47 47 H 1.09001 * 109.59196 * 293.81839 * 17 5 4 48 48 H 1.09006 * 109.49575 * 185.41089 * 18 17 5 49 49 H 1.08998 * 109.50022 * 65.31433 * 18 17 5 50 50 H 0.97005 * 120.00090 * 95.06312 * 21 19 18 51 51 H 0.96999 * 119.99814 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0420 -0.7237 1.2493 5 7 3.5053 -0.8284 1.1689 6 6 4.2819 -0.3855 2.1774 7 8 3.7819 0.1932 3.1187 8 6 5.7716 -0.6092 2.1354 9 6 6.2910 -0.8513 3.5545 10 6 7.7996 -1.1128 3.5042 11 7 8.4500 0.0046 2.8062 12 6 9.4709 0.6716 3.3799 13 7 9.9739 0.2507 4.5574 14 8 9.9382 1.6531 2.8354 15 6 7.9666 0.3805 1.4706 16 6 6.4561 0.6251 1.5438 17 6 4.1058 -1.4256 -0.0317 18 6 3.5707 -0.6940 -1.2667 19 6 2.0407 -0.7228 -1.2487 20 1 1.6579 -0.2240 -2.1390 21 7 1.5788 -2.1129 -1.2311 22 6 1.4486 -2.8060 -2.4049 23 1 1.6860 -2.3275 -3.3437 24 6 1.0114 -4.1233 -2.3883 25 7 0.7226 -4.7065 -1.2442 26 14 0.8345 -5.0690 -3.9895 27 1 0.3556 -6.4448 -3.7015 28 1 -0.1437 -4.3775 -4.8672 29 1 2.1513 -5.1365 -4.6727 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5149 0.8895 32 1 -0.3633 0.5129 -0.8905 33 1 1.7645 -0.1581 2.1388 34 1 1.6064 -1.7217 1.2978 35 1 5.9910 -1.4784 1.5153 36 1 6.0942 0.0275 4.1687 37 1 5.7860 -1.7164 3.9842 38 1 7.9919 -2.0412 2.9664 39 1 8.1933 -1.1894 4.5177 40 1 9.5557 -0.4878 5.0272 41 1 10.7541 0.6861 4.9349 42 1 8.1726 -0.4260 0.7670 43 1 8.4685 1.2902 1.1408 44 1 6.0687 0.8108 0.5420 45 1 6.2573 1.4898 2.1768 46 1 5.1902 -1.3230 0.0125 47 1 3.8386 -2.4808 -0.0878 48 1 3.9333 -1.1884 -2.1680 49 1 3.9153 0.3400 -1.2548 50 1 1.3653 -2.5425 -0.3880 51 1 0.4167 -5.6269 -1.2327 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036284636.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:57 Heat of formation + Delta-G solvation = -76.672616 kcal Electronic energy + Delta-G solvation = -31160.163793 eV Core-core repulsion = 27093.480990 eV Total energy + Delta-G solvation = -4066.682803 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.81536 -41.00262 -39.33958 -37.97402 -35.84985 -35.09653 -34.47077 -33.39042 -32.89172 -31.93080 -30.88461 -28.24990 -26.98693 -25.94103 -25.19712 -24.35476 -23.06286 -22.80176 -21.00734 -20.40967 -19.67868 -19.29450 -19.02096 -18.21583 -17.86568 -16.92278 -16.65257 -16.49871 -16.15730 -15.92331 -15.83714 -15.54224 -15.30788 -15.02857 -14.85890 -14.81413 -14.49054 -14.23695 -14.19884 -13.83219 -13.58305 -13.30958 -13.01856 -12.97155 -12.89215 -12.80785 -12.64960 -12.38158 -12.26263 -12.14829 -11.96462 -11.90150 -11.75769 -11.61572 -11.54607 -11.29410 -11.13568 -10.85764 -10.69984 -10.63483 -9.61294 -9.53824 -8.89316 -7.86272 -5.12058 1.51895 1.52775 1.58400 1.60674 1.82084 2.03210 2.15786 2.61937 3.23035 3.43035 3.47981 3.68057 3.78072 3.86116 3.90694 4.04462 4.06166 4.12419 4.17718 4.33502 4.33613 4.42772 4.44293 4.52408 4.63398 4.67143 4.70231 4.73598 4.77715 4.83711 4.86738 4.92772 4.99705 5.05872 5.10827 5.15495 5.23714 5.29239 5.32171 5.35982 5.48623 5.49800 5.62855 5.67799 5.87225 6.03651 6.35644 6.51373 6.91250 7.18377 7.43408 7.62490 8.19718 8.43493 9.36756 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.016792 B = 0.002732 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.014976 B =10247.554252 C =10900.574197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.098 4.098 3 H 0.082 0.918 4 C 0.124 3.876 5 N -0.600 5.600 6 C 0.516 3.484 7 O -0.588 6.588 8 C -0.101 4.101 9 C -0.114 4.114 10 C 0.116 3.884 11 N -0.627 5.627 12 C 0.702 3.298 13 N -0.851 5.851 14 O -0.645 6.645 15 C 0.132 3.868 16 C -0.113 4.113 17 C 0.118 3.882 18 C -0.142 4.142 19 C 0.172 3.828 20 H 0.044 0.956 21 N -0.723 5.723 22 C -0.225 4.225 23 H 0.074 0.926 24 C -0.072 4.072 25 N -0.968 5.968 26 Si 0.962 3.038 27 H -0.303 1.303 28 H -0.285 1.285 29 H -0.278 1.278 30 H 0.040 0.960 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.078 0.922 34 H 0.050 0.950 35 H 0.116 0.884 36 H 0.058 0.942 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.106 0.894 40 H 0.411 0.589 41 H 0.419 0.581 42 H 0.094 0.906 43 H 0.082 0.918 44 H 0.091 0.909 45 H 0.053 0.947 46 H 0.109 0.891 47 H 0.054 0.946 48 H 0.069 0.931 49 H 0.075 0.925 50 H 0.374 0.626 51 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.934 7.313 9.730 20.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.118 4.118 3 H 0.100 0.900 4 C 0.001 3.999 5 N -0.331 5.331 6 C 0.305 3.695 7 O -0.469 6.469 8 C -0.122 4.122 9 C -0.153 4.153 10 C -0.007 4.007 11 N -0.365 5.365 12 C 0.401 3.599 13 N -0.422 5.422 14 O -0.528 6.528 15 C 0.009 3.991 16 C -0.152 4.152 17 C -0.004 4.004 18 C -0.183 4.183 19 C 0.063 3.937 20 H 0.062 0.938 21 N -0.365 5.365 22 C -0.357 4.357 23 H 0.092 0.908 24 C -0.264 4.264 25 N -0.620 5.620 26 Si 0.793 3.207 27 H -0.230 1.230 28 H -0.211 1.211 29 H -0.205 1.205 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.069 0.931 35 H 0.133 0.867 36 H 0.077 0.923 37 H 0.103 0.897 38 H 0.114 0.886 39 H 0.124 0.876 40 H 0.244 0.756 41 H 0.252 0.748 42 H 0.112 0.888 43 H 0.100 0.900 44 H 0.110 0.890 45 H 0.071 0.929 46 H 0.127 0.873 47 H 0.072 0.928 48 H 0.087 0.913 49 H 0.093 0.907 50 H 0.207 0.793 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 15.851 8.156 9.558 20.227 hybrid contribution -0.788 -1.110 -0.209 1.377 sum 15.063 7.046 9.350 19.078 Atomic orbital electron populations 1.21604 0.94328 1.01462 1.01612 1.21609 0.96418 0.99205 0.94555 0.89995 1.21442 0.79921 0.99972 0.98589 1.48210 1.06512 1.59694 1.18685 1.21163 0.90191 0.77097 0.81002 1.90636 1.76484 1.43828 1.35905 1.21379 0.89097 1.01431 1.00298 1.21752 0.96008 1.03013 0.94547 1.21851 0.90782 0.89254 0.98780 1.47340 1.34473 1.35330 1.19335 1.16105 0.80218 0.81838 0.81708 1.42987 1.35982 1.40983 1.22205 1.90921 1.65458 1.29673 1.66706 1.21489 0.92358 1.02438 0.82807 1.21788 0.95268 0.96022 1.02121 1.21739 0.98505 0.97035 0.83071 1.22393 0.98040 1.00271 0.97590 1.20434 0.92631 0.85125 0.95497 0.93770 1.42563 1.79170 1.09173 1.05555 1.19514 1.34761 0.93779 0.87691 0.90791 1.25351 1.03652 0.98433 0.98978 1.69791 1.53899 1.12855 1.25439 0.85382 0.77840 0.77373 0.80152 1.22967 1.21129 1.20457 0.94085 0.91930 0.92338 0.90335 0.93134 0.86652 0.92272 0.89719 0.88552 0.87603 0.75585 0.74763 0.88825 0.89965 0.89039 0.92855 0.87265 0.92775 0.91274 0.90682 0.79288 0.94404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.15 9.06 71.98 0.65 -3.50 16 2 C -0.10 -3.05 2.67 -10.71 -0.03 -3.08 16 3 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 4 C 0.12 4.05 5.43 86.36 0.47 4.52 16 5 N -0.60 -17.43 2.97 -818.89 -2.43 -19.86 16 6 C 0.52 14.46 6.69 87.66 0.59 15.04 16 7 O -0.59 -20.74 15.72 -3.03 -0.05 -20.79 16 8 C -0.10 -1.93 1.68 -11.51 -0.02 -1.95 16 9 C -0.11 -1.88 4.99 30.67 0.15 -1.73 16 10 C 0.12 1.21 6.39 86.36 0.55 1.76 16 11 N -0.63 -10.17 2.97 -836.91 -2.49 -12.66 16 12 C 0.70 14.17 8.57 179.06 1.53 15.70 16 13 N -0.85 -9.28 8.78 -184.75 -1.62 -10.91 16 14 O -0.65 -19.35 16.60 -3.98 -0.07 -19.42 16 15 C 0.13 2.19 6.44 86.36 0.56 2.75 16 16 C -0.11 -2.05 5.25 30.67 0.16 -1.89 16 17 C 0.12 3.22 5.89 86.36 0.51 3.73 16 18 C -0.14 -4.09 5.78 30.67 0.18 -3.91 16 19 C 0.17 5.99 2.53 45.02 0.11 6.11 16 20 H 0.04 1.61 8.08 -2.39 -0.02 1.59 16 21 N -0.72 -32.30 3.64 -322.81 -1.18 -33.47 16 22 C -0.23 -11.41 9.93 84.03 0.83 -10.57 16 23 H 0.07 3.61 7.83 -2.91 -0.02 3.59 16 24 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 25 N -0.97 -56.26 13.06 21.65 0.28 -55.98 16 26 Si 0.96 44.14 29.55 68.60 2.03 46.16 16 27 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 28 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 29 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 30 H 0.04 1.53 7.54 -2.39 -0.02 1.51 16 31 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 32 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.08 2.63 7.00 -2.39 -0.02 2.62 16 34 H 0.05 1.90 6.64 -2.39 -0.02 1.89 16 35 H 0.12 1.79 6.19 -2.39 -0.01 1.77 16 36 H 0.06 1.25 7.90 -2.39 -0.02 1.23 16 37 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.10 0.69 8.14 -2.38 -0.02 0.67 16 39 H 0.11 0.55 5.64 -2.39 -0.01 0.53 16 40 H 0.41 1.95 6.32 -92.71 -0.59 1.36 16 41 H 0.42 3.73 8.93 -92.71 -0.83 2.90 16 42 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.08 1.68 7.00 -2.39 -0.02 1.67 16 44 H 0.09 1.50 8.04 -2.38 -0.02 1.48 16 45 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.11 2.13 5.45 -2.38 -0.01 2.12 16 47 H 0.05 1.84 7.74 -2.39 -0.02 1.83 16 48 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 49 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 50 H 0.37 18.33 5.93 -92.70 -0.55 17.78 16 51 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 Total: -1.00 -73.58 389.22 0.20 -73.38 By element: Atomic # 1 Polarization: 34.97 SS G_CDS: -0.99 Total: 33.97 kcal Atomic # 6 Polarization: 12.86 SS G_CDS: 6.72 Total: 19.58 kcal Atomic # 7 Polarization: -125.45 SS G_CDS: -7.44 Total: -132.88 kcal Atomic # 8 Polarization: -40.10 SS G_CDS: -0.11 Total: -40.21 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Total: -73.58 0.20 -73.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036284636.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.290 kcal (2) G-P(sol) polarization free energy of solvation -73.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds