Wall clock time and date at job start Tue Mar 31 2020 21:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.58274 * 2 1 4 4 C 1.53196 * 109.71182 * 120.35804 * 2 1 3 5 5 C 1.53042 * 109.31343 * 65.20550 * 4 2 1 6 6 H 1.08998 * 109.46108 * 301.37005 * 5 4 2 7 7 N 1.46492 * 109.46427 * 181.39485 * 5 4 2 8 8 C 1.36935 * 120.00376 * 154.97139 * 7 5 4 9 9 H 1.08003 * 119.99724 * 0.02562 * 8 7 5 10 10 C 1.38810 * 120.00063 * 180.02562 * 8 7 5 11 11 N 1.31622 * 119.99887 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 120.00212 * 359.97438 * 10 8 7 13 13 H 1.48506 * 109.47297 * 89.99941 * 12 10 8 14 14 H 1.48503 * 109.47261 * 330.00122 * 12 10 8 15 15 H 1.48500 * 109.47454 * 210.00115 * 12 10 8 16 16 C 1.53049 * 109.52432 * 61.37934 * 5 4 2 17 17 C 1.53188 * 109.31478 * 298.62833 * 16 5 4 18 18 N 1.46924 * 108.77385 * 54.63849 * 17 16 5 19 19 C 1.34779 * 120.63340 * 126.41421 * 18 17 16 20 20 O 1.21281 * 120.00186 * 180.02562 * 19 18 17 21 21 C 1.50701 * 119.99758 * 359.97438 * 19 18 17 22 22 N 1.46897 * 109.47206 * 180.02562 * 21 19 18 23 23 C 1.47185 * 111.00240 * 188.93910 * 22 21 19 24 24 C 1.52993 * 108.72171 * 167.62567 * 23 22 21 25 25 N 1.46006 * 110.04184 * 50.30022 * 24 23 22 26 26 C 1.46501 * 118.53747 * 161.82378 * 25 24 23 27 27 C 1.33724 * 122.92438 * 341.84744 * 25 24 23 28 28 O 1.21288 * 118.62041 * 181.68433 * 27 25 24 29 29 C 1.46901 * 110.99754 * 66.04855 * 22 21 19 30 30 H 1.09005 * 109.47035 * 180.28347 * 1 2 3 31 31 H 1.09001 * 109.47332 * 300.28570 * 1 2 3 32 32 H 1.08994 * 109.47147 * 60.28491 * 1 2 3 33 33 H 1.08994 * 109.48781 * 305.25748 * 4 2 1 34 34 H 1.09008 * 109.50510 * 185.16193 * 4 2 1 35 35 H 0.97009 * 119.99477 * 334.97724 * 7 5 4 36 36 H 0.97006 * 119.99732 * 180.02562 * 11 10 8 37 37 H 1.08999 * 109.49686 * 58.58684 * 16 5 4 38 38 H 1.09007 * 109.49202 * 178.67533 * 16 5 4 39 39 H 1.08996 * 109.58371 * 174.42271 * 17 16 5 40 40 H 1.09000 * 109.58795 * 294.70762 * 17 16 5 41 41 H 1.09000 * 109.47479 * 300.00310 * 21 19 18 42 42 H 1.09001 * 109.46759 * 60.00188 * 21 19 18 43 43 H 1.09009 * 109.59423 * 287.41327 * 23 22 21 44 44 H 1.09003 * 109.59370 * 47.85859 * 23 22 21 45 45 H 1.09002 * 109.36806 * 290.12932 * 24 23 22 46 46 H 1.08991 * 109.28735 * 170.42378 * 24 23 22 47 47 H 1.08999 * 109.47196 * 180.02562 * 26 25 24 48 48 H 1.09000 * 109.46568 * 300.02386 * 26 25 24 49 49 H 1.08991 * 109.47068 * 60.02154 * 26 25 24 50 50 H 1.09005 * 109.38975 * 293.81879 * 29 22 21 51 51 H 1.09001 * 109.39079 * 53.61083 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0467 -0.7289 1.2444 5 6 1.6473 -2.2043 1.1692 6 1 0.5624 -2.2837 1.0995 7 7 2.1109 -2.8976 2.3736 8 6 1.4759 -4.0347 2.7964 9 1 0.6334 -4.4207 2.2417 10 6 1.9149 -4.6913 3.9379 11 7 1.3048 -5.7845 4.3440 12 14 3.3725 -4.0240 4.8968 13 1 2.8914 -3.0723 5.9303 14 1 4.2960 -3.3223 3.9694 15 1 4.0892 -5.1469 5.5533 16 6 2.2857 -2.8448 -0.0655 17 6 1.7719 -2.1400 -1.3248 18 7 2.0226 -0.6981 -1.1953 19 6 2.6912 -0.0283 -2.1549 20 8 2.8921 1.1618 -2.0360 21 6 3.1901 -0.7586 -3.3752 22 7 3.8814 0.1862 -4.2626 23 6 4.1962 -0.4399 -5.5570 24 6 4.6248 0.6520 -6.5392 25 7 5.6540 1.4930 -5.9346 26 6 6.4819 2.3251 -6.8112 27 6 5.8748 1.5371 -4.6165 28 8 6.7299 2.2871 -4.1954 29 6 5.1076 0.6968 -3.6352 30 1 -0.3633 -1.0277 0.0051 31 1 -0.3634 0.5183 0.8874 32 1 -0.3633 0.5094 -0.8925 33 1 1.6110 -0.2790 2.1365 34 1 3.1329 -0.6478 1.2890 35 1 2.8678 -2.5510 2.8716 36 1 1.6115 -6.2431 5.1419 37 1 3.3695 -2.7437 -0.0084 38 1 2.0201 -3.9013 -0.1057 39 1 2.2970 -2.5251 -2.1989 40 1 0.7022 -2.3188 -1.4330 41 1 3.8823 -1.5438 -3.0711 42 1 2.3462 -1.2026 -3.9031 43 1 5.0080 -1.1560 -5.4289 44 1 3.3128 -0.9503 -5.9406 45 1 3.7616 1.2657 -6.7968 46 1 5.0212 0.1883 -7.4424 47 1 7.1962 2.8875 -6.2099 48 1 7.0198 1.6890 -7.5141 49 1 5.8455 3.0179 -7.3618 50 1 4.8451 1.3025 -2.7678 51 1 5.7273 -0.1415 -3.3169 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044658419.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:49 Heat of formation + Delta-G solvation = -56.478223 kcal Electronic energy + Delta-G solvation = -30626.600421 eV Core-core repulsion = 26560.793313 eV Total energy + Delta-G solvation = -4065.807109 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.80154 -41.16309 -39.19958 -38.02150 -36.40397 -36.16239 -34.03014 -33.48459 -31.56132 -31.07654 -30.39164 -28.67618 -27.49671 -25.91598 -25.62152 -24.27428 -23.83564 -22.81622 -21.56699 -20.06951 -19.71905 -19.02741 -18.55639 -17.87296 -17.67025 -17.20457 -16.79643 -16.67897 -16.43397 -15.87623 -15.72234 -15.53315 -15.27976 -15.08822 -14.89378 -14.72368 -14.47910 -14.25689 -14.15144 -13.93255 -13.55227 -13.49910 -13.37935 -13.17446 -13.00548 -12.97345 -12.88688 -12.74914 -12.51088 -12.40609 -12.27658 -12.16205 -12.01960 -11.90303 -11.76788 -11.13660 -11.06203 -10.91565 -10.67424 -9.78490 -9.63646 -9.49081 -9.28332 -8.00445 -5.32548 1.38343 1.39584 1.43345 1.46679 1.66139 1.87928 2.00029 2.48888 2.69899 3.31125 3.41733 3.51050 3.58830 3.79301 3.87398 3.99327 4.05050 4.10586 4.23557 4.25540 4.27823 4.34804 4.37075 4.42121 4.54044 4.54465 4.60566 4.61533 4.62546 4.66826 4.74686 4.79668 4.83965 4.92060 4.99413 5.03837 5.07140 5.08688 5.25361 5.33492 5.34760 5.53530 5.58185 5.69082 5.80755 5.84569 6.23994 6.30761 6.50200 7.00560 7.09946 7.24256 7.87450 8.04672 9.20775 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.018886 B = 0.002421 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.196458 B =11564.685693 C =11914.956966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.147 3.853 3 H 0.084 0.916 4 C -0.128 4.128 5 C 0.176 3.824 6 H 0.055 0.945 7 N -0.754 5.754 8 C -0.219 4.219 9 H 0.064 0.936 10 C -0.064 4.064 11 N -0.983 5.983 12 Si 0.948 3.052 13 H -0.283 1.283 14 H -0.257 1.257 15 H -0.299 1.299 16 C -0.144 4.144 17 C 0.114 3.886 18 N -0.602 5.602 19 C 0.510 3.490 20 O -0.571 6.571 21 C 0.039 3.961 22 N -0.528 5.528 23 C 0.032 3.968 24 C 0.114 3.886 25 N -0.606 5.606 26 C 0.069 3.931 27 C 0.517 3.483 28 O -0.602 6.602 29 C 0.042 3.958 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.054 0.946 35 H 0.361 0.639 36 H 0.256 0.744 37 H 0.052 0.948 38 H 0.065 0.935 39 H 0.115 0.885 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.147 0.853 43 H 0.057 0.943 44 H 0.134 0.866 45 H 0.080 0.920 46 H 0.116 0.884 47 H 0.061 0.939 48 H 0.087 0.913 49 H 0.077 0.923 50 H 0.099 0.901 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.675 10.680 -27.775 29.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.043 3.957 3 H 0.102 0.898 4 C -0.167 4.167 5 C 0.068 3.932 6 H 0.073 0.927 7 N -0.397 5.397 8 C -0.350 4.350 9 H 0.082 0.918 10 C -0.255 4.255 11 N -0.634 5.634 12 Si 0.777 3.223 13 H -0.209 1.209 14 H -0.182 1.182 15 H -0.226 1.226 16 C -0.185 4.185 17 C -0.009 4.009 18 N -0.335 5.335 19 C 0.299 3.701 20 O -0.450 6.450 21 C -0.091 4.091 22 N -0.254 5.254 23 C -0.095 4.095 24 C -0.008 4.008 25 N -0.338 5.338 26 C -0.073 4.073 27 C 0.305 3.695 28 O -0.484 6.484 29 C -0.089 4.089 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.194 0.806 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.133 0.867 40 H 0.103 0.897 41 H 0.107 0.893 42 H 0.164 0.836 43 H 0.076 0.924 44 H 0.152 0.848 45 H 0.098 0.902 46 H 0.134 0.866 47 H 0.080 0.920 48 H 0.105 0.895 49 H 0.096 0.904 50 H 0.117 0.883 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.726 11.910 -27.615 30.304 hybrid contribution 1.393 -0.579 1.731 2.296 sum 5.120 11.332 -25.884 28.716 Atomic orbital electron populations 1.22070 0.93589 1.02861 1.02624 1.20989 0.95006 0.96288 0.83371 0.89760 1.22134 1.00733 0.95726 0.98080 1.20435 0.97317 0.89901 0.85510 0.92655 1.42894 1.37303 1.29458 1.30014 1.19022 1.09673 1.00161 1.06102 0.91756 1.25403 1.02224 0.97989 0.99925 1.69864 1.45061 1.21442 1.26994 0.85515 0.80495 0.77221 0.79118 1.20918 1.18175 1.22625 1.22448 1.00402 1.00217 0.95428 1.21899 1.02503 0.77891 0.98567 1.48308 1.55343 1.09928 1.19946 1.21082 0.77207 0.87259 0.84571 1.90666 1.58112 1.17044 1.79213 1.22213 1.01604 0.93344 0.91914 1.62134 1.21806 1.37088 1.04388 1.22774 1.03448 0.95489 0.87807 1.21837 0.90326 0.92002 0.96593 1.47504 1.36341 1.44202 1.05720 1.21863 0.95725 0.95821 0.93900 1.20395 0.82557 0.82535 0.83979 1.90683 1.37032 1.42083 1.78572 1.22260 0.90493 0.99069 0.97035 0.91723 0.91033 0.91961 0.90758 0.92712 0.80647 0.93545 0.92912 0.91622 0.86716 0.89701 0.89346 0.83554 0.92444 0.84813 0.90180 0.86631 0.91978 0.89467 0.90446 0.88259 0.90579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 9.04 71.98 0.65 -2.68 16 2 C 0.15 3.67 3.20 44.98 0.14 3.81 16 3 H 0.08 2.36 7.00 -2.39 -0.02 2.34 16 4 C -0.13 -3.70 5.03 30.67 0.15 -3.54 16 5 C 0.18 5.89 2.53 45.02 0.11 6.00 16 6 H 0.06 1.92 6.44 -2.39 -0.02 1.91 16 7 N -0.75 -33.13 4.92 -322.82 -1.59 -34.72 16 8 C -0.22 -11.77 10.41 84.03 0.87 -10.90 16 9 H 0.06 3.75 8.06 -2.91 -0.02 3.72 16 10 C -0.06 -3.67 5.50 84.86 0.47 -3.20 16 11 N -0.98 -61.51 13.97 21.65 0.30 -61.21 16 12 Si 0.95 45.13 27.73 68.60 1.90 47.03 16 13 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 14 H -0.26 -11.17 6.52 99.48 0.65 -10.52 16 15 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 16 C -0.14 -3.98 5.66 30.67 0.17 -3.80 16 17 C 0.11 2.06 5.93 86.36 0.51 2.57 16 18 N -0.60 -13.04 2.68 -795.04 -2.13 -15.17 16 19 C 0.51 11.50 7.46 87.66 0.65 12.15 16 20 O -0.57 -17.91 13.72 -3.03 -0.04 -17.95 16 21 C 0.04 0.52 3.79 85.56 0.32 0.84 16 22 N -0.53 -8.37 4.47 -905.45 -4.05 -12.42 16 23 C 0.03 0.23 5.60 86.25 0.48 0.71 16 24 C 0.11 0.90 6.64 86.47 0.57 1.47 16 25 N -0.61 -10.16 3.23 -850.20 -2.74 -12.90 16 26 C 0.07 0.93 10.55 127.77 1.35 2.28 16 27 C 0.52 13.01 7.57 87.68 0.66 13.67 16 28 O -0.60 -20.55 16.07 -3.05 -0.05 -20.60 16 29 C 0.04 0.94 5.14 85.42 0.44 1.38 16 30 H 0.06 1.42 5.75 -2.38 -0.01 1.41 16 31 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 35 H 0.36 15.76 5.66 -92.70 -0.52 15.23 16 36 H 0.26 15.38 8.31 -92.70 -0.77 14.61 16 37 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 39 H 0.11 1.24 5.93 -2.39 -0.01 1.23 16 40 H 0.08 1.39 7.51 -2.39 -0.02 1.37 16 41 H 0.09 0.91 7.60 -2.39 -0.02 0.89 16 42 H 0.15 0.93 7.74 -2.39 -0.02 0.91 16 43 H 0.06 0.36 8.08 -2.38 -0.02 0.34 16 44 H 0.13 0.13 7.91 -2.39 -0.02 0.11 16 45 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 46 H 0.12 0.18 8.12 -2.39 -0.02 0.16 16 47 H 0.06 1.22 6.67 -2.39 -0.02 1.20 16 48 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 49 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 50 H 0.10 2.97 6.01 -2.38 -0.01 2.96 16 51 H 0.08 1.51 8.05 -2.39 -0.02 1.49 16 Total: -1.00 -81.72 389.68 -0.47 -82.19 By element: Atomic # 1 Polarization: 24.64 SS G_CDS: 0.35 Total: 24.99 kcal Atomic # 6 Polarization: 13.19 SS G_CDS: 7.57 Total: 20.76 kcal Atomic # 7 Polarization: -126.21 SS G_CDS: -10.21 Total: -136.42 kcal Atomic # 8 Polarization: -38.46 SS G_CDS: -0.09 Total: -38.55 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.90 Total: 47.03 kcal Total: -81.72 -0.47 -82.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044658419.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.711 kcal (2) G-P(sol) polarization free energy of solvation -81.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds