Wall clock time and date at job start Tue Mar 31 2020 21:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.58593 * 2 1 4 4 C 1.53192 * 109.58561 * 120.28115 * 2 1 3 5 5 C 1.53039 * 109.31176 * 174.42111 * 4 2 1 6 6 H 1.09004 * 109.45891 * 58.64126 * 5 4 2 7 7 N 1.46495 * 109.46113 * 178.61289 * 5 4 2 8 8 C 1.36946 * 120.00286 * 205.02405 * 7 5 4 9 9 H 1.07996 * 119.99814 * 0.02562 * 8 7 5 10 10 C 1.38808 * 120.00071 * 179.97438 * 8 7 5 11 11 N 1.31620 * 120.00192 * 180.02562 * 10 8 7 12 12 Si 1.86804 * 120.00318 * 0.02562 * 10 8 7 13 13 H 1.48496 * 109.47216 * 89.99109 * 12 10 8 14 14 H 1.48500 * 109.46731 * 329.99656 * 12 10 8 15 15 H 1.48497 * 109.47120 * 209.99784 * 12 10 8 16 16 C 1.53044 * 109.53032 * 298.62791 * 5 4 2 17 17 C 1.53195 * 109.30696 * 61.38307 * 16 5 4 18 18 N 1.46922 * 108.76643 * 305.34359 * 17 16 5 19 19 C 1.34773 * 120.63201 * 233.63580 * 18 17 16 20 20 O 1.21278 * 120.00221 * 185.95705 * 19 18 17 21 21 C 1.50703 * 120.00143 * 5.96395 * 19 18 17 22 22 C 1.53042 * 109.45928 * 292.77049 * 21 19 18 23 23 C 1.53186 * 109.31367 * 178.61385 * 22 21 19 24 24 N 1.46930 * 108.77746 * 54.63029 * 23 22 21 25 25 C 1.34778 * 120.63082 * 126.41118 * 24 23 22 26 26 N 1.34777 * 119.99895 * 355.01388 * 25 24 23 27 27 O 1.21581 * 120.00024 * 175.01055 * 25 24 23 28 28 C 1.46921 * 118.74052 * 306.39625 * 24 23 22 29 29 C 1.53042 * 109.46133 * 172.69996 * 21 19 18 30 30 H 1.09000 * 109.47206 * 292.76037 * 1 2 3 31 31 H 1.08992 * 109.47299 * 52.76356 * 1 2 3 32 32 H 1.09005 * 109.46639 * 172.76616 * 1 2 3 33 33 H 1.09002 * 109.50155 * 54.47509 * 4 2 1 34 34 H 1.09001 * 109.49874 * 294.37025 * 4 2 1 35 35 H 0.96999 * 120.00370 * 25.03150 * 7 5 4 36 36 H 0.96993 * 120.00502 * 180.02562 * 11 10 8 37 37 H 1.08995 * 109.50080 * 181.32126 * 16 5 4 38 38 H 1.08995 * 109.49630 * 301.42456 * 16 5 4 39 39 H 1.09006 * 109.57957 * 185.56811 * 17 16 5 40 40 H 1.08996 * 109.59889 * 65.13760 * 17 16 5 41 41 H 1.09003 * 109.46265 * 52.72353 * 21 19 18 42 42 H 1.09003 * 109.49041 * 298.56314 * 22 21 19 43 43 H 1.09001 * 109.49928 * 58.65747 * 22 21 19 44 44 H 1.08999 * 109.58588 * 294.84704 * 23 22 21 45 45 H 1.09003 * 109.58781 * 174.41940 * 23 22 21 46 46 H 0.97001 * 120.00125 * 4.95223 * 26 25 24 47 47 H 0.97006 * 120.00221 * 184.95247 * 26 25 24 48 48 H 1.09007 * 109.58186 * 293.81909 * 28 24 23 49 49 H 1.08998 * 109.70668 * 173.46602 * 28 24 23 50 50 H 1.09000 * 109.49441 * 301.33162 * 29 21 19 51 51 H 1.08994 * 109.49749 * 61.40247 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7278 1.2464 5 6 3.5675 -0.8465 1.1712 6 1 4.0061 0.1488 1.0989 7 7 4.0652 -1.5126 2.3773 8 6 5.3496 -1.2947 2.7994 9 1 5.9955 -0.6314 2.2433 10 6 5.8210 -1.9255 3.9425 11 7 7.0553 -1.7157 4.3485 12 14 4.7036 -3.0723 4.9047 13 1 4.8462 -4.4553 4.3831 14 1 3.2939 -2.6300 4.7556 15 1 5.0824 -3.0431 6.3403 16 6 3.9567 -1.6660 -0.0613 17 6 3.4650 -0.9487 -1.3225 18 7 2.0226 -0.7012 -1.1935 19 6 1.1674 -1.1097 -2.1517 20 8 -0.0050 -0.8061 -2.0878 21 6 1.6679 -1.9441 -3.3026 22 6 2.6026 -1.1021 -4.1741 23 6 3.1365 -1.9631 -5.3230 24 7 1.9979 -2.5450 -6.0467 25 6 1.8806 -2.3908 -7.3805 26 7 2.7565 -1.6143 -8.0486 27 8 0.9847 -2.9521 -7.9809 28 6 0.9897 -3.2985 -5.2888 29 6 0.4797 -2.4224 -4.1402 30 1 -0.3633 0.3976 0.9476 31 1 -0.3633 0.6218 -0.8181 32 1 -0.3633 -1.0196 -0.1294 33 1 1.6030 -1.7237 1.2936 34 1 1.7661 -0.1640 2.1371 35 1 3.4850 -2.1082 2.8769 36 1 7.3849 -2.1567 5.1470 37 1 5.0409 -1.7701 -0.1015 38 1 3.4978 -2.6529 -0.0017 39 1 3.6518 -1.5747 -2.1951 40 1 3.9903 0.0001 -1.4317 41 1 2.2109 -2.8068 -2.9166 42 1 2.0538 -0.2526 -4.5807 43 1 3.4364 -0.7423 -3.5712 44 1 3.7609 -2.7614 -4.9218 45 1 3.7230 -1.3439 -6.0018 46 1 3.5127 -1.2246 -7.5827 47 1 2.6306 -1.4451 -8.9955 48 1 1.4390 -4.2057 -4.8847 49 1 0.1592 -3.5625 -5.9435 50 1 -0.1973 -3.0025 -3.5131 51 1 -0.0493 -1.5606 -4.5467 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044849977.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:28 Heat of formation + Delta-G solvation = -32.832867 kcal Electronic energy + Delta-G solvation = -30994.158625 eV Core-core repulsion = 26929.376856 eV Total energy + Delta-G solvation = -4064.781769 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.13940 -40.24964 -37.98365 -37.16527 -34.75383 -34.38610 -33.58676 -32.02503 -31.88975 -31.25017 -29.85453 -27.35669 -26.26488 -24.41464 -23.86474 -22.75101 -22.56493 -21.33701 -20.27859 -19.81898 -19.27912 -18.56339 -17.63348 -17.28610 -16.84633 -16.12035 -15.77652 -15.62862 -15.08369 -14.95787 -14.71174 -14.41081 -14.19292 -14.02501 -13.93880 -13.69644 -13.48278 -13.27785 -12.93542 -12.69507 -12.63922 -12.28148 -12.14581 -11.98001 -11.90796 -11.68909 -11.49615 -11.12124 -11.05962 -11.05039 -10.95841 -10.83383 -10.55675 -10.48612 -10.34123 -10.04374 -9.97924 -9.66514 -9.13340 -9.00323 -8.89165 -8.51943 -7.35691 -5.84484 -3.20609 2.41639 2.58072 2.84898 2.97380 3.32210 3.35623 3.40785 3.70834 4.20479 4.27462 4.40703 4.52574 4.61565 4.81635 4.88254 4.93479 4.95936 5.02178 5.04556 5.14429 5.19551 5.31451 5.33151 5.35750 5.45097 5.49337 5.49911 5.60231 5.67453 5.71482 5.77071 5.86481 5.97297 5.99707 6.00458 6.08043 6.20246 6.27860 6.32084 6.38956 6.41888 6.56073 6.60675 6.74383 6.87701 7.45450 7.48242 7.90627 8.19035 8.27051 8.34579 9.12635 9.85569 10.05079 11.33630 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.017404 B = 0.002616 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.460765 B =10699.887602 C =11478.788501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.147 3.853 3 H 0.071 0.929 4 C -0.139 4.139 5 C 0.184 3.816 6 H 0.056 0.944 7 N -0.748 5.748 8 C -0.245 4.245 9 H 0.090 0.910 10 C 0.006 3.994 11 N -0.933 5.933 12 Si 0.884 3.116 13 H -0.285 1.285 14 H -0.277 1.277 15 H -0.291 1.291 16 C -0.152 4.152 17 C 0.100 3.900 18 N -0.603 5.603 19 C 0.519 3.481 20 O -0.537 6.537 21 C -0.108 4.108 22 C -0.136 4.136 23 C 0.113 3.887 24 N -0.627 5.627 25 C 0.710 3.290 26 N -0.869 5.869 27 O -0.595 6.595 28 C 0.128 3.872 29 C -0.112 4.112 30 H 0.043 0.957 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.361 0.639 36 H 0.260 0.740 37 H 0.080 0.920 38 H 0.059 0.941 39 H 0.086 0.914 40 H 0.070 0.930 41 H 0.098 0.902 42 H 0.074 0.926 43 H 0.092 0.908 44 H 0.076 0.924 45 H 0.081 0.919 46 H 0.396 0.604 47 H 0.413 0.587 48 H 0.068 0.932 49 H 0.097 0.903 50 H 0.083 0.917 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.449 1.717 -21.164 22.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.044 3.956 3 H 0.089 0.911 4 C -0.178 4.178 5 C 0.074 3.926 6 H 0.074 0.926 7 N -0.390 5.390 8 C -0.375 4.375 9 H 0.108 0.892 10 C -0.190 4.190 11 N -0.580 5.580 12 Si 0.714 3.286 13 H -0.211 1.211 14 H -0.203 1.203 15 H -0.217 1.217 16 C -0.193 4.193 17 C -0.023 4.023 18 N -0.336 5.336 19 C 0.307 3.693 20 O -0.415 6.415 21 C -0.130 4.130 22 C -0.175 4.175 23 C -0.011 4.011 24 N -0.366 5.366 25 C 0.410 3.590 26 N -0.440 5.440 27 O -0.473 6.473 28 C 0.005 3.995 29 C -0.151 4.151 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.194 0.806 36 H 0.070 0.930 37 H 0.099 0.901 38 H 0.077 0.923 39 H 0.104 0.896 40 H 0.088 0.912 41 H 0.116 0.884 42 H 0.093 0.907 43 H 0.110 0.890 44 H 0.095 0.905 45 H 0.099 0.901 46 H 0.227 0.773 47 H 0.245 0.755 48 H 0.086 0.914 49 H 0.115 0.885 50 H 0.101 0.899 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.462 1.528 -21.305 23.361 hybrid contribution 0.002 -0.607 0.845 1.041 sum -9.460 0.921 -20.459 22.559 Atomic orbital electron populations 1.22165 0.92896 1.03516 1.00606 1.21266 0.95365 0.95182 0.83766 0.91071 1.22341 0.97513 1.00939 0.96965 1.20129 0.90755 0.95324 0.86381 0.92620 1.42798 1.13091 1.55176 1.27931 1.19048 0.87462 1.23543 1.07431 0.89186 1.24673 0.96092 1.00111 0.98153 1.69692 1.15102 1.47097 1.26142 0.86564 0.80534 0.81527 0.79970 1.21121 1.20326 1.21735 1.22654 1.02162 0.99789 0.94716 1.22082 0.79657 1.00782 0.99749 1.48229 1.07599 1.57426 1.20324 1.20472 0.85927 0.79934 0.82976 1.90735 1.17345 1.56802 1.76603 1.21347 0.98337 0.98925 0.94386 1.22178 0.99926 0.98551 0.96809 1.21669 0.88097 0.97211 0.94086 1.47285 1.26600 1.57467 1.05244 1.15848 0.82088 0.79530 0.81559 1.43179 1.30757 1.55762 1.14265 1.90959 1.36661 1.52457 1.67223 1.21550 0.91701 0.93287 0.92930 1.21746 0.96495 1.00818 0.96029 0.93840 0.90881 0.91779 0.91956 0.90602 0.80642 0.93007 0.90131 0.92263 0.89636 0.91204 0.88381 0.90692 0.88952 0.90533 0.90097 0.77338 0.75501 0.91387 0.88485 0.89869 0.90592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.76 7.61 37.16 0.28 -1.48 16 2 C 0.15 1.90 3.49 -67.60 -0.24 1.66 16 3 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 4 C -0.14 -2.04 4.84 -26.61 -0.13 -2.17 16 5 C 0.18 3.14 2.73 -67.89 -0.19 2.96 16 6 H 0.06 1.00 8.08 -51.93 -0.42 0.58 16 7 N -0.75 -16.51 4.92 -53.39 -0.26 -16.78 16 8 C -0.25 -6.51 10.41 -15.06 -0.16 -6.67 16 9 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 10 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 11 N -0.93 -28.35 13.97 55.49 0.78 -27.58 16 12 Si 0.88 21.48 27.74 -169.99 -4.71 16.77 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.28 -6.36 6.52 56.52 0.37 -5.99 16 15 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 16 C -0.15 -2.18 5.66 -26.61 -0.15 -2.33 16 17 C 0.10 1.04 5.14 -3.71 -0.02 1.02 16 18 N -0.60 -7.04 2.97 -165.22 -0.49 -7.53 16 19 C 0.52 6.11 6.83 -10.99 -0.08 6.03 16 20 O -0.54 -7.80 11.58 5.56 0.06 -7.74 16 21 C -0.11 -0.93 1.65 -91.73 -0.15 -1.08 16 22 C -0.14 -0.88 4.90 -26.61 -0.13 -1.01 16 23 C 0.11 0.60 6.43 -3.71 -0.02 0.57 16 24 N -0.63 -5.11 2.97 -178.50 -0.53 -5.64 16 25 C 0.71 7.10 8.57 -86.92 -0.75 6.35 16 26 N -0.87 -5.04 8.79 27.63 0.24 -4.80 16 27 O -0.59 -8.59 16.62 5.29 0.09 -8.50 16 28 C 0.13 1.09 6.41 -3.71 -0.02 1.07 16 29 C -0.11 -1.01 4.66 -26.61 -0.12 -1.13 16 30 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 1.02 6.67 -51.93 -0.35 0.67 16 32 H 0.06 0.93 6.82 -51.93 -0.35 0.57 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.36 8.01 5.66 -40.82 -0.23 7.77 16 36 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 37 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.09 0.67 4.41 -51.93 -0.23 0.44 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.10 0.77 7.59 -51.93 -0.39 0.37 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.09 0.51 5.24 -51.93 -0.27 0.24 16 44 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.08 0.24 5.57 -51.93 -0.29 -0.04 16 46 H 0.40 1.22 6.29 -40.82 -0.26 0.97 16 47 H 0.41 1.97 8.93 -40.82 -0.36 1.61 16 48 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.10 0.97 7.04 -51.93 -0.37 0.61 16 50 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 51 H 0.08 0.81 8.06 -51.93 -0.42 0.40 16 LS Contribution 381.43 15.07 5.75 5.75 Total: -1.00 -34.86 381.43 -9.23 -44.08 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -8.18 Total: 8.10 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: -1.96 Total: 3.86 kcal Atomic # 7 Polarization: -62.06 SS G_CDS: -0.27 Total: -62.32 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: 0.15 Total: -16.24 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.71 Total: 16.77 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.86 -9.23 -44.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044849977.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.251 kcal (2) G-P(sol) polarization free energy of solvation -34.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds