Wall clock time and date at job start Tue Mar 31 2020 21:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.58593 * 2 1 4 4 C 1.53192 * 109.58561 * 120.28115 * 2 1 3 5 5 C 1.53039 * 109.31176 * 174.42111 * 4 2 1 6 6 H 1.09004 * 109.45891 * 58.64126 * 5 4 2 7 7 N 1.46495 * 109.46113 * 178.61289 * 5 4 2 8 8 C 1.36946 * 120.00286 * 205.02405 * 7 5 4 9 9 H 1.07996 * 119.99814 * 0.02562 * 8 7 5 10 10 C 1.38808 * 120.00071 * 179.97438 * 8 7 5 11 11 N 1.31620 * 120.00192 * 180.02562 * 10 8 7 12 12 Si 1.86804 * 120.00318 * 0.02562 * 10 8 7 13 13 H 1.48496 * 109.47216 * 89.99109 * 12 10 8 14 14 H 1.48500 * 109.46731 * 329.99656 * 12 10 8 15 15 H 1.48497 * 109.47120 * 209.99784 * 12 10 8 16 16 C 1.53044 * 109.53032 * 298.62791 * 5 4 2 17 17 C 1.53195 * 109.30696 * 61.38307 * 16 5 4 18 18 N 1.46922 * 108.76643 * 305.34359 * 17 16 5 19 19 C 1.34773 * 120.63201 * 233.63580 * 18 17 16 20 20 O 1.21278 * 120.00221 * 185.95705 * 19 18 17 21 21 C 1.50703 * 120.00143 * 5.96395 * 19 18 17 22 22 C 1.53042 * 109.45928 * 292.77049 * 21 19 18 23 23 C 1.53186 * 109.31367 * 178.61385 * 22 21 19 24 24 N 1.46930 * 108.77746 * 54.63029 * 23 22 21 25 25 C 1.34778 * 120.63082 * 126.41118 * 24 23 22 26 26 N 1.34777 * 119.99895 * 355.01388 * 25 24 23 27 27 O 1.21581 * 120.00024 * 175.01055 * 25 24 23 28 28 C 1.46921 * 118.74052 * 306.39625 * 24 23 22 29 29 C 1.53042 * 109.46133 * 172.69996 * 21 19 18 30 30 H 1.09000 * 109.47206 * 292.76037 * 1 2 3 31 31 H 1.08992 * 109.47299 * 52.76356 * 1 2 3 32 32 H 1.09005 * 109.46639 * 172.76616 * 1 2 3 33 33 H 1.09002 * 109.50155 * 54.47509 * 4 2 1 34 34 H 1.09001 * 109.49874 * 294.37025 * 4 2 1 35 35 H 0.96999 * 120.00370 * 25.03150 * 7 5 4 36 36 H 0.96993 * 120.00502 * 180.02562 * 11 10 8 37 37 H 1.08995 * 109.50080 * 181.32126 * 16 5 4 38 38 H 1.08995 * 109.49630 * 301.42456 * 16 5 4 39 39 H 1.09006 * 109.57957 * 185.56811 * 17 16 5 40 40 H 1.08996 * 109.59889 * 65.13760 * 17 16 5 41 41 H 1.09003 * 109.46265 * 52.72353 * 21 19 18 42 42 H 1.09003 * 109.49041 * 298.56314 * 22 21 19 43 43 H 1.09001 * 109.49928 * 58.65747 * 22 21 19 44 44 H 1.08999 * 109.58588 * 294.84704 * 23 22 21 45 45 H 1.09003 * 109.58781 * 174.41940 * 23 22 21 46 46 H 0.97001 * 120.00125 * 4.95223 * 26 25 24 47 47 H 0.97006 * 120.00221 * 184.95247 * 26 25 24 48 48 H 1.09007 * 109.58186 * 293.81909 * 28 24 23 49 49 H 1.08998 * 109.70668 * 173.46602 * 28 24 23 50 50 H 1.09000 * 109.49441 * 301.33162 * 29 21 19 51 51 H 1.08994 * 109.49749 * 61.40247 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7278 1.2464 5 6 3.5675 -0.8465 1.1712 6 1 4.0061 0.1488 1.0989 7 7 4.0652 -1.5126 2.3773 8 6 5.3496 -1.2947 2.7994 9 1 5.9955 -0.6314 2.2433 10 6 5.8210 -1.9255 3.9425 11 7 7.0553 -1.7157 4.3485 12 14 4.7036 -3.0723 4.9047 13 1 4.8462 -4.4553 4.3831 14 1 3.2939 -2.6300 4.7556 15 1 5.0824 -3.0431 6.3403 16 6 3.9567 -1.6660 -0.0613 17 6 3.4650 -0.9487 -1.3225 18 7 2.0226 -0.7012 -1.1935 19 6 1.1674 -1.1097 -2.1517 20 8 -0.0050 -0.8061 -2.0878 21 6 1.6679 -1.9441 -3.3026 22 6 2.6026 -1.1021 -4.1741 23 6 3.1365 -1.9631 -5.3230 24 7 1.9979 -2.5450 -6.0467 25 6 1.8806 -2.3908 -7.3805 26 7 2.7565 -1.6143 -8.0486 27 8 0.9847 -2.9521 -7.9809 28 6 0.9897 -3.2985 -5.2888 29 6 0.4797 -2.4224 -4.1402 30 1 -0.3633 0.3976 0.9476 31 1 -0.3633 0.6218 -0.8181 32 1 -0.3633 -1.0196 -0.1294 33 1 1.6030 -1.7237 1.2936 34 1 1.7661 -0.1640 2.1371 35 1 3.4850 -2.1082 2.8769 36 1 7.3849 -2.1567 5.1470 37 1 5.0409 -1.7701 -0.1015 38 1 3.4978 -2.6529 -0.0017 39 1 3.6518 -1.5747 -2.1951 40 1 3.9903 0.0001 -1.4317 41 1 2.2109 -2.8068 -2.9166 42 1 2.0538 -0.2526 -4.5807 43 1 3.4364 -0.7423 -3.5712 44 1 3.7609 -2.7614 -4.9218 45 1 3.7230 -1.3439 -6.0018 46 1 3.5127 -1.2246 -7.5827 47 1 2.6306 -1.4451 -8.9955 48 1 1.4390 -4.2057 -4.8847 49 1 0.1592 -3.5625 -5.9435 50 1 -0.1973 -3.0025 -3.5131 51 1 -0.0493 -1.5606 -4.5467 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044849977.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:27 Heat of formation + Delta-G solvation = -58.673271 kcal Electronic energy + Delta-G solvation = -30995.279149 eV Core-core repulsion = 26929.376856 eV Total energy + Delta-G solvation = -4065.902293 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.97804 -41.05872 -39.02637 -38.07012 -36.27483 -35.13048 -34.42907 -33.79562 -32.73905 -31.88492 -31.42343 -28.52075 -27.01553 -25.86177 -24.62130 -24.10143 -23.40844 -22.28584 -21.55490 -20.57590 -20.20484 -19.51275 -19.21616 -17.92936 -17.73468 -17.11173 -16.71305 -16.48475 -16.41257 -15.95974 -15.76431 -15.46767 -15.31078 -15.02165 -14.85461 -14.83517 -14.54983 -14.35430 -14.06964 -13.78593 -13.74286 -13.51250 -13.08417 -13.05935 -12.97571 -12.73709 -12.66396 -12.54658 -12.25863 -12.08389 -12.01800 -11.90652 -11.79467 -11.76952 -11.55368 -11.34756 -11.28502 -10.89610 -10.69761 -10.05285 -9.59753 -9.51677 -9.27753 -7.99627 -5.32055 1.39607 1.40815 1.48355 1.66770 1.82085 2.00864 2.16642 2.50050 3.24347 3.32179 3.42218 3.53036 3.69473 3.76129 3.87427 4.01929 4.05184 4.09849 4.24580 4.29580 4.33256 4.35967 4.44470 4.56728 4.59724 4.62408 4.63638 4.71569 4.75540 4.81163 4.85831 4.87089 4.98024 5.03054 5.08416 5.13595 5.18587 5.26515 5.33889 5.42313 5.50488 5.53224 5.73524 5.81403 5.87376 6.03243 6.24712 6.52738 6.92822 7.10855 7.26270 7.62675 7.88083 8.05437 9.21667 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.017404 B = 0.002616 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.460765 B =10699.887602 C =11478.788501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.150 3.850 3 H 0.080 0.920 4 C -0.127 4.127 5 C 0.175 3.825 6 H 0.048 0.952 7 N -0.754 5.754 8 C -0.220 4.220 9 H 0.064 0.936 10 C -0.064 4.064 11 N -0.984 5.984 12 Si 0.948 3.052 13 H -0.281 1.281 14 H -0.256 1.256 15 H -0.301 1.301 16 C -0.143 4.143 17 C 0.108 3.892 18 N -0.603 5.603 19 C 0.516 3.484 20 O -0.568 6.568 21 C -0.103 4.103 22 C -0.130 4.130 23 C 0.110 3.890 24 N -0.627 5.627 25 C 0.701 3.299 26 N -0.850 5.850 27 O -0.647 6.647 28 C 0.132 3.868 29 C -0.103 4.103 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.048 0.952 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.362 0.638 36 H 0.256 0.744 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.121 0.879 40 H 0.085 0.915 41 H 0.116 0.884 42 H 0.064 0.936 43 H 0.110 0.890 44 H 0.096 0.904 45 H 0.108 0.892 46 H 0.412 0.588 47 H 0.419 0.581 48 H 0.085 0.915 49 H 0.075 0.925 50 H 0.075 0.925 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.432 1.562 -22.431 24.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.047 3.953 3 H 0.098 0.902 4 C -0.166 4.166 5 C 0.068 3.932 6 H 0.066 0.934 7 N -0.396 5.396 8 C -0.351 4.351 9 H 0.082 0.918 10 C -0.255 4.255 11 N -0.635 5.635 12 Si 0.777 3.223 13 H -0.207 1.207 14 H -0.180 1.180 15 H -0.228 1.228 16 C -0.184 4.184 17 C -0.014 4.014 18 N -0.336 5.336 19 C 0.306 3.694 20 O -0.448 6.448 21 C -0.125 4.125 22 C -0.168 4.168 23 C -0.012 4.012 24 N -0.364 5.364 25 C 0.401 3.599 26 N -0.421 5.421 27 O -0.530 6.530 28 C 0.008 3.992 29 C -0.142 4.142 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.195 0.805 36 H 0.065 0.935 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.138 0.862 40 H 0.103 0.897 41 H 0.134 0.866 42 H 0.083 0.917 43 H 0.128 0.872 44 H 0.114 0.886 45 H 0.126 0.874 46 H 0.245 0.755 47 H 0.252 0.748 48 H 0.103 0.897 49 H 0.094 0.906 50 H 0.094 0.906 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.441 1.413 -22.612 24.545 hybrid contribution -0.017 -0.457 1.177 1.263 sum -9.459 0.956 -21.435 23.449 Atomic orbital electron populations 1.22009 0.92962 1.02365 1.00676 1.21175 0.95159 0.95490 0.83503 0.90203 1.22201 0.95498 1.00974 0.97961 1.20406 0.92188 0.94924 0.85719 0.93438 1.42868 1.11479 1.55600 1.29661 1.19026 0.88692 1.21197 1.06182 0.91844 1.25413 0.97534 1.02716 0.99857 1.69860 1.17332 1.49271 1.26995 0.85505 0.79668 0.79479 0.77676 1.20696 1.18034 1.22774 1.22450 1.01298 0.99538 0.95125 1.22154 0.78691 1.01783 0.98814 1.48266 1.08160 1.57210 1.19921 1.21017 0.85453 0.79570 0.83410 1.90733 1.18762 1.57878 1.77384 1.21370 0.98511 0.99220 0.93350 1.22162 0.99709 0.97998 0.96961 1.21931 0.87268 0.97970 0.94009 1.47333 1.27114 1.57159 1.04815 1.16126 0.82037 0.79677 0.82110 1.42990 1.30272 1.54356 1.14529 1.90923 1.38959 1.54658 1.68447 1.21455 0.91594 0.93865 0.92257 1.21608 0.96592 0.99893 0.96061 0.93009 0.91738 0.93299 0.92310 0.90998 0.80535 0.93529 0.91544 0.92516 0.86160 0.89706 0.86581 0.91716 0.87214 0.88607 0.87393 0.75489 0.74827 0.89683 0.90626 0.90619 0.92787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.06 7.61 71.98 0.55 -2.51 16 2 C 0.15 3.56 3.49 44.98 0.16 3.72 16 3 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 4 C -0.13 -3.52 4.84 30.67 0.15 -3.37 16 5 C 0.18 5.72 2.73 45.02 0.12 5.84 16 6 H 0.05 1.64 8.08 -2.39 -0.02 1.62 16 7 N -0.75 -32.39 4.92 -322.81 -1.59 -33.98 16 8 C -0.22 -11.70 10.41 84.03 0.87 -10.82 16 9 H 0.06 3.66 8.06 -2.91 -0.02 3.64 16 10 C -0.06 -3.62 5.50 84.86 0.47 -3.15 16 11 N -0.98 -61.05 13.97 21.65 0.30 -60.75 16 12 Si 0.95 44.27 27.74 68.60 1.90 46.17 16 13 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 14 H -0.26 -10.84 6.52 99.48 0.65 -10.19 16 15 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 16 C -0.14 -3.76 5.66 30.67 0.17 -3.59 16 17 C 0.11 1.85 5.14 86.36 0.44 2.29 16 18 N -0.60 -12.43 2.97 -795.03 -2.36 -14.79 16 19 C 0.52 11.00 6.83 87.66 0.60 11.60 16 20 O -0.57 -15.94 11.58 -3.02 -0.04 -15.97 16 21 C -0.10 -1.47 1.65 -11.51 -0.02 -1.48 16 22 C -0.13 -1.18 4.90 30.67 0.15 -1.03 16 23 C 0.11 0.71 6.43 86.36 0.56 1.26 16 24 N -0.63 -8.79 2.97 -836.91 -2.49 -11.28 16 25 C 0.70 13.01 8.57 179.05 1.53 14.55 16 26 N -0.85 -7.85 8.79 -184.75 -1.62 -9.47 16 27 O -0.65 -18.73 16.62 -3.97 -0.07 -18.80 16 28 C 0.13 2.08 6.41 86.36 0.55 2.63 16 29 C -0.10 -1.73 4.66 30.67 0.14 -1.59 16 30 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.06 1.73 6.67 -2.39 -0.02 1.72 16 32 H 0.05 1.36 6.82 -2.38 -0.02 1.35 16 33 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.36 15.37 5.66 -92.71 -0.52 14.85 16 36 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 37 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.12 1.27 4.41 -2.38 -0.01 1.26 16 40 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.12 1.31 7.59 -2.39 -0.02 1.29 16 42 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.11 0.65 5.24 -2.39 -0.01 0.64 16 44 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 45 H 0.11 0.13 5.57 -2.39 -0.01 0.11 16 46 H 0.41 1.08 6.29 -92.71 -0.58 0.50 16 47 H 0.42 3.20 8.93 -92.70 -0.83 2.37 16 48 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 49 H 0.08 1.55 7.04 -2.39 -0.02 1.53 16 50 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 51 H 0.05 1.15 8.06 -2.39 -0.02 1.13 16 Total: -1.00 -78.70 381.43 -0.53 -79.23 By element: Atomic # 1 Polarization: 26.32 SS G_CDS: -1.02 Total: 25.30 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: 6.45 Total: 14.34 kcal Atomic # 7 Polarization: -122.51 SS G_CDS: -7.76 Total: -130.27 kcal Atomic # 8 Polarization: -34.67 SS G_CDS: -0.10 Total: -34.77 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.90 Total: 46.17 kcal Total: -78.70 -0.53 -79.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044849977.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.556 kcal (2) G-P(sol) polarization free energy of solvation -78.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds