Wall clock time and date at job start Tue Mar 31 2020 21:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.70404 * 2 1 4 4 C 1.53198 * 109.58264 * 120.35291 * 2 1 3 5 5 C 1.53046 * 109.31125 * 174.42218 * 4 2 1 6 6 H 1.09002 * 109.45949 * 178.61956 * 5 4 2 7 7 N 1.46497 * 109.45936 * 58.65251 * 5 4 2 8 8 C 1.36941 * 119.99530 * 154.99749 * 7 5 4 9 9 H 1.08003 * 120.00409 * 0.02562 * 8 7 5 10 10 C 1.38816 * 119.99843 * 179.97438 * 8 7 5 11 11 N 1.31621 * 119.99889 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 120.00218 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.46639 * 90.00249 * 12 10 8 14 14 H 1.48497 * 109.47339 * 210.00681 * 12 10 8 15 15 H 1.48500 * 109.46695 * 330.00719 * 12 10 8 16 16 C 1.53043 * 109.53566 * 298.63265 * 5 4 2 17 17 C 1.52764 * 109.38212 * 61.24237 * 16 5 4 18 18 N 1.46923 * 109.58864 * 239.63813 * 2 1 3 19 19 C 1.34780 * 120.62839 * 6.58726 * 18 2 1 20 20 O 1.21280 * 120.00055 * 356.74293 * 19 18 2 21 21 C 1.50701 * 119.99926 * 176.74292 * 19 18 2 22 22 C 1.53041 * 109.45954 * 171.87625 * 21 19 18 23 23 C 1.53193 * 109.31286 * 181.37389 * 22 21 19 24 24 N 1.46925 * 108.77460 * 305.36961 * 23 22 21 25 25 C 1.34780 * 120.62904 * 233.58868 * 24 23 22 26 26 N 1.34772 * 120.00082 * 355.09075 * 25 24 23 27 27 O 1.21593 * 119.99882 * 174.82548 * 25 24 23 28 28 C 1.46925 * 118.74109 * 53.85679 * 24 23 22 29 29 C 1.53032 * 109.45265 * 291.94335 * 21 19 18 30 30 H 1.09000 * 109.47466 * 176.77350 * 1 2 3 31 31 H 1.09001 * 109.47241 * 296.77968 * 1 2 3 32 32 H 1.09004 * 109.46674 * 56.77457 * 1 2 3 33 33 H 1.08998 * 109.50070 * 294.37172 * 4 2 1 34 34 H 1.09004 * 109.49781 * 54.47217 * 4 2 1 35 35 H 0.96991 * 120.00506 * 335.00440 * 7 5 4 36 36 H 0.96999 * 119.99679 * 180.02562 * 11 10 8 37 37 H 1.09002 * 109.49747 * 181.31537 * 16 5 4 38 38 H 1.08998 * 109.49837 * 301.38380 * 16 5 4 39 39 H 1.09001 * 109.50862 * 185.70348 * 17 16 5 40 40 H 1.08998 * 109.43095 * 65.42082 * 17 16 5 41 41 H 1.09006 * 109.45901 * 51.90925 * 21 19 18 42 42 H 1.09007 * 109.49316 * 61.42683 * 22 21 19 43 43 H 1.09000 * 109.52382 * 301.34743 * 22 21 19 44 44 H 1.08997 * 109.58526 * 185.58152 * 23 22 21 45 45 H 1.08997 * 109.58820 * 65.15540 * 23 22 21 46 46 H 0.97003 * 120.00580 * 184.66153 * 26 25 24 47 47 H 0.97003 * 120.00200 * 4.67618 * 26 25 24 48 48 H 1.09005 * 109.57981 * 65.92979 * 28 24 23 49 49 H 1.09004 * 109.58777 * 186.34905 * 28 24 23 50 50 H 1.09000 * 109.49603 * 298.57571 * 29 21 19 51 51 H 1.09003 * 109.49937 * 58.66604 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0435 -0.7294 1.2455 5 6 3.5675 -0.8480 1.1703 6 1 3.9377 -1.3449 2.0671 7 7 4.1570 0.4897 1.0750 8 6 5.4414 0.7036 1.4992 9 1 6.0198 -0.1139 1.9035 10 6 6.0003 1.9711 1.4084 11 7 5.2955 2.9673 0.9152 12 14 7.7525 2.2628 1.9863 13 1 8.6899 2.0397 0.8564 14 1 7.8873 3.6593 2.4730 15 1 8.0733 1.3212 3.0889 16 6 3.9568 -1.6659 -0.0633 17 6 3.4644 -0.9521 -1.3209 18 7 2.0226 -0.6997 -1.1944 19 6 1.1674 -1.1071 -2.1531 20 8 -0.0264 -0.9501 -2.0075 21 6 1.6945 -1.7578 -3.4060 22 6 0.5245 -2.3032 -4.2282 23 6 1.0661 -2.9939 -5.4837 24 7 1.9253 -2.0489 -6.2099 25 6 1.7077 -1.7853 -7.5137 26 7 0.7584 -2.4630 -8.1889 27 8 2.3645 -0.9326 -8.0794 28 6 3.0299 -1.4011 -5.4895 29 6 2.4629 -0.7242 -4.2325 30 1 -0.3634 -1.0260 -0.0578 31 1 -0.3634 0.4630 0.9174 32 1 -0.3633 0.5631 -0.8597 33 1 1.7660 -0.1668 2.1369 34 1 1.6028 -1.7253 1.2914 35 1 3.6377 1.2239 0.7117 36 1 5.6862 3.8528 0.8514 37 1 5.0412 -1.7698 -0.1035 38 1 3.4986 -2.6531 -0.0047 39 1 3.6504 -1.5800 -2.1923 40 1 3.9929 -0.0051 -1.4308 41 1 2.3620 -2.5764 -3.1368 42 1 -0.1302 -1.4816 -4.5187 43 1 -0.0366 -3.0219 -3.6309 44 1 0.2355 -3.2967 -6.1212 45 1 1.6476 -3.8701 -5.1968 46 1 0.6472 -2.3222 -9.1422 47 1 0.1862 -3.0917 -7.7216 48 1 3.7682 -2.1501 -5.2031 49 1 3.4954 -0.6527 -6.1309 50 1 1.7899 0.0826 -4.5229 51 1 3.2819 -0.3190 -3.6381 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044849979.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:34 Heat of formation + Delta-G solvation = -60.266964 kcal Electronic energy + Delta-G solvation = -31463.929680 eV Core-core repulsion = 27397.958279 eV Total energy + Delta-G solvation = -4065.971401 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.95816 -41.07617 -39.09366 -38.02635 -35.85684 -35.21204 -34.24060 -33.66066 -32.80374 -31.83005 -30.80766 -28.48103 -26.99749 -25.72042 -25.11465 -24.41406 -23.45661 -22.48204 -21.18462 -20.44676 -19.79064 -19.26410 -19.08480 -17.92888 -17.67054 -17.05056 -16.71947 -16.49716 -16.34327 -15.79988 -15.66703 -15.49185 -15.32690 -15.15358 -14.89792 -14.70330 -14.59513 -14.20755 -14.08192 -13.82966 -13.44976 -13.38095 -13.13435 -12.91061 -12.85991 -12.75797 -12.62811 -12.46049 -12.27784 -12.11513 -11.99903 -11.87347 -11.77113 -11.62819 -11.57200 -11.33363 -11.28017 -10.86689 -10.70664 -9.98204 -9.57274 -9.44292 -8.93516 -7.89156 -5.16117 1.50135 1.50432 1.58445 1.68002 1.82293 2.05354 2.15460 2.59827 3.24102 3.44455 3.47135 3.68531 3.79543 3.89208 3.94969 4.04245 4.05212 4.11576 4.20638 4.31354 4.33608 4.40493 4.44646 4.53068 4.62107 4.70752 4.72027 4.74051 4.81530 4.84271 4.88995 4.94916 4.98317 5.09661 5.12928 5.16443 5.25459 5.30368 5.35440 5.38546 5.44370 5.50250 5.59574 5.77382 5.86744 6.02763 6.32784 6.59529 6.92329 7.27869 7.39849 7.62324 8.16661 8.39134 9.34152 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.013767 B = 0.003084 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.365585 B = 9077.744587 C =10371.009339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.145 3.855 3 H 0.044 0.956 4 C -0.121 4.121 5 C 0.165 3.835 6 H 0.047 0.953 7 N -0.731 5.731 8 C -0.227 4.227 9 H 0.077 0.923 10 C -0.075 4.075 11 N -0.970 5.970 12 Si 0.965 3.035 13 H -0.289 1.289 14 H -0.304 1.304 15 H -0.270 1.270 16 C -0.141 4.141 17 C 0.119 3.881 18 N -0.597 5.597 19 C 0.512 3.488 20 O -0.567 6.567 21 C -0.099 4.099 22 C -0.107 4.107 23 C 0.114 3.886 24 N -0.627 5.627 25 C 0.700 3.300 26 N -0.849 5.849 27 O -0.648 6.648 28 C 0.134 3.866 29 C -0.122 4.122 30 H 0.066 0.934 31 H 0.047 0.953 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.372 0.628 36 H 0.247 0.753 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.109 0.891 40 H 0.047 0.953 41 H 0.124 0.876 42 H 0.052 0.948 43 H 0.093 0.907 44 H 0.105 0.895 45 H 0.100 0.900 46 H 0.419 0.581 47 H 0.412 0.588 48 H 0.097 0.903 49 H 0.074 0.926 50 H 0.047 0.953 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.749 -19.165 -12.554 25.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.042 3.958 3 H 0.062 0.938 4 C -0.160 4.160 5 C 0.056 3.944 6 H 0.065 0.935 7 N -0.372 5.372 8 C -0.359 4.359 9 H 0.095 0.905 10 C -0.267 4.267 11 N -0.622 5.622 12 Si 0.795 3.205 13 H -0.216 1.216 14 H -0.231 1.231 15 H -0.195 1.195 16 C -0.181 4.181 17 C -0.003 4.003 18 N -0.329 5.329 19 C 0.302 3.698 20 O -0.448 6.448 21 C -0.120 4.120 22 C -0.146 4.146 23 C -0.008 4.008 24 N -0.365 5.365 25 C 0.400 3.600 26 N -0.420 5.420 27 O -0.531 6.531 28 C 0.010 3.990 29 C -0.161 4.161 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.205 0.795 36 H 0.056 0.944 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.127 0.873 40 H 0.066 0.934 41 H 0.142 0.858 42 H 0.071 0.929 43 H 0.111 0.889 44 H 0.123 0.877 45 H 0.118 0.882 46 H 0.252 0.748 47 H 0.245 0.755 48 H 0.115 0.885 49 H 0.093 0.907 50 H 0.066 0.934 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.711 -18.570 -12.582 24.857 hybrid contribution 0.637 1.264 0.300 1.447 sum -10.073 -17.306 -12.283 23.491 Atomic orbital electron populations 1.22017 0.92471 1.02730 1.00110 1.21096 0.95190 0.94592 0.84933 0.93758 1.22116 0.95839 1.01210 0.96832 1.20457 0.91571 0.86150 0.96188 0.93520 1.42676 1.12939 1.06411 1.75204 1.19590 0.90736 0.93939 1.31669 0.90491 1.25433 1.01717 0.96108 1.03486 1.69812 1.37917 1.00668 1.53753 0.85260 0.80934 0.76333 0.77960 1.21610 1.23077 1.19542 1.22300 1.01198 0.98830 0.95782 1.21656 0.78768 1.00519 0.99396 1.48189 1.08058 1.56565 1.20038 1.21090 0.85979 0.78048 0.84691 1.90711 1.16865 1.57491 1.79714 1.21363 0.99596 0.99323 0.91736 1.21684 0.96028 1.00911 0.95943 1.21923 0.94611 0.91533 0.92753 1.47356 1.33748 1.47255 1.08109 1.16144 0.80934 0.81017 0.81945 1.42962 1.37811 1.47767 1.13482 1.90934 1.54566 1.37904 1.69654 1.21543 0.88128 0.97676 0.91634 1.21985 1.00183 0.97395 0.96534 0.91537 0.93474 0.92931 0.91666 0.89764 0.79506 0.94409 0.91501 0.90175 0.87256 0.93417 0.85821 0.92938 0.88890 0.87657 0.88201 0.74796 0.75485 0.88511 0.90717 0.93430 0.89911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.58 7.59 71.98 0.55 -3.03 16 2 C 0.15 4.75 3.20 44.98 0.14 4.90 16 3 H 0.04 1.76 6.64 -2.39 -0.02 1.75 16 4 C -0.12 -3.75 5.07 30.68 0.16 -3.60 16 5 C 0.16 5.80 3.10 45.02 0.14 5.94 16 6 H 0.05 1.68 8.08 -2.39 -0.02 1.66 16 7 N -0.73 -33.85 4.31 -322.79 -1.39 -35.25 16 8 C -0.23 -11.80 9.93 84.03 0.83 -10.97 16 9 H 0.08 3.82 7.83 -2.91 -0.02 3.80 16 10 C -0.08 -4.17 5.50 84.86 0.47 -3.71 16 11 N -0.97 -58.12 13.06 21.65 0.28 -57.84 16 12 Si 0.96 45.06 29.55 68.60 2.03 47.08 16 13 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 14 H -0.30 -14.62 7.11 99.48 0.71 -13.92 16 15 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 16 C -0.14 -4.01 5.76 30.53 0.18 -3.83 16 17 C 0.12 3.29 4.73 86.22 0.41 3.69 16 18 N -0.60 -17.17 2.98 -795.85 -2.37 -19.54 16 19 C 0.51 13.68 6.90 87.66 0.60 14.28 16 20 O -0.57 -17.97 11.41 -3.03 -0.03 -18.00 16 21 C -0.10 -1.82 1.63 -11.52 -0.02 -1.83 16 22 C -0.11 -1.60 4.67 30.67 0.14 -1.46 16 23 C 0.11 1.07 6.39 86.36 0.55 1.62 16 24 N -0.63 -10.60 2.97 -836.07 -2.48 -13.08 16 25 C 0.70 14.90 8.57 179.05 1.53 16.43 16 26 N -0.85 -9.61 8.78 -184.74 -1.62 -11.23 16 27 O -0.65 -20.78 16.60 -4.01 -0.07 -20.85 16 28 C 0.13 2.51 6.47 86.51 0.56 3.06 16 29 C -0.12 -2.55 5.02 30.81 0.15 -2.39 16 30 H 0.07 2.02 6.84 -2.39 -0.02 2.01 16 31 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.05 1.79 6.65 -2.39 -0.02 1.78 16 33 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 35 H 0.37 19.02 6.06 -92.72 -0.56 18.45 16 36 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 37 H 0.07 2.03 8.14 -2.39 -0.02 2.02 16 38 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.11 2.19 4.99 -2.39 -0.01 2.18 16 40 H 0.05 1.71 7.74 -2.39 -0.02 1.69 16 41 H 0.12 1.63 7.09 -2.38 -0.02 1.61 16 42 H 0.05 1.06 8.05 -2.38 -0.02 1.04 16 43 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.11 0.44 5.64 -2.39 -0.01 0.42 16 45 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.42 3.96 8.93 -92.71 -0.83 3.13 16 47 H 0.41 1.86 6.32 -92.71 -0.59 1.28 16 48 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 49 H 0.07 1.81 7.00 -2.39 -0.02 1.79 16 50 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 51 H 0.08 1.84 6.04 -2.39 -0.01 1.83 16 Total: -1.00 -75.08 380.99 -0.26 -75.34 By element: Atomic # 1 Polarization: 35.24 SS G_CDS: -1.00 Total: 34.24 kcal Atomic # 6 Polarization: 12.71 SS G_CDS: 6.40 Total: 19.11 kcal Atomic # 7 Polarization: -129.35 SS G_CDS: -7.58 Total: -136.93 kcal Atomic # 8 Polarization: -38.75 SS G_CDS: -0.10 Total: -38.85 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Total: -75.08 -0.26 -75.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044849979.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.075 kcal (2) G-P(sol) polarization free energy of solvation -75.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds