Wall clock time and date at job start Tue Mar 31 2020 21:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.58597 * 2 1 4 4 C 1.53192 * 109.70247 * 239.63822 * 2 1 3 5 5 C 1.53044 * 109.30780 * 185.50906 * 4 2 1 6 6 C 1.53039 * 109.53957 * 61.36663 * 5 4 2 7 7 H 1.08996 * 109.49909 * 178.67634 * 6 5 4 8 8 N 1.46506 * 109.49465 * 58.61445 * 6 5 4 9 9 C 1.34781 * 119.99583 * 155.00210 * 8 6 5 10 10 O 1.21281 * 120.00153 * 359.97438 * 9 8 6 11 11 C 1.50700 * 119.99588 * 180.02562 * 9 8 6 12 12 C 1.53042 * 109.45831 * 300.06459 * 11 9 8 13 13 C 1.53195 * 109.30923 * 178.61798 * 12 11 9 14 14 N 1.46930 * 108.77683 * 54.63622 * 13 12 11 15 15 C 1.34773 * 120.62962 * 126.36746 * 14 13 12 16 16 N 1.34783 * 120.00251 * 4.95551 * 15 14 13 17 17 O 1.21583 * 120.00147 * 184.95056 * 15 14 13 18 18 C 1.46918 * 118.73616 * 306.38668 * 14 13 12 19 19 C 1.53042 * 109.45882 * 179.97438 * 11 9 8 20 20 C 1.53618 * 109.24292 * 298.51020 * 6 5 4 21 21 N 1.46923 * 108.54438 * 54.85573 * 20 6 5 22 22 C 1.36942 * 120.63534 * 126.37196 * 21 20 6 23 23 H 1.08002 * 119.99878 * 221.21960 * 22 21 20 24 24 C 1.38810 * 119.99836 * 41.48665 * 22 21 20 25 25 N 1.31611 * 119.99954 * 214.79295 * 24 22 21 26 26 Si 1.86804 * 119.99777 * 34.79112 * 24 22 21 27 27 H 1.48507 * 109.46888 * 84.47312 * 26 24 22 28 28 H 1.48499 * 109.47123 * 204.46756 * 26 24 22 29 29 H 1.48498 * 109.47327 * 324.47140 * 26 24 22 30 30 H 1.08999 * 109.47660 * 299.72350 * 1 2 3 31 31 H 1.09004 * 109.46877 * 59.71928 * 1 2 3 32 32 H 1.08993 * 109.47355 * 179.71878 * 1 2 3 33 33 H 1.08997 * 109.49648 * 305.45905 * 4 2 1 34 34 H 1.09000 * 109.49609 * 65.52942 * 4 2 1 35 35 H 1.08999 * 109.45526 * 181.38464 * 5 4 2 36 36 H 1.08996 * 109.45973 * 301.35775 * 5 4 2 37 37 H 0.97001 * 119.99972 * 335.00079 * 8 6 5 38 38 H 1.09000 * 109.46281 * 60.02497 * 11 9 8 39 39 H 1.08998 * 109.49883 * 298.56813 * 12 11 9 40 40 H 1.08999 * 109.49602 * 58.66537 * 12 11 9 41 41 H 1.08996 * 109.58646 * 294.84591 * 13 12 11 42 42 H 1.09006 * 109.70244 * 174.49237 * 13 12 11 43 43 H 0.96997 * 119.99830 * 354.91070 * 16 15 14 44 44 H 0.96994 * 120.00229 * 174.91715 * 16 15 14 45 45 H 1.08994 * 109.59082 * 293.82023 * 18 14 13 46 46 H 1.09001 * 109.70371 * 173.46631 * 18 14 13 47 47 H 1.08997 * 109.49982 * 301.33567 * 19 11 9 48 48 H 1.09011 * 109.49507 * 61.43360 * 19 11 9 49 49 H 1.09001 * 109.74293 * 295.11689 * 20 6 5 50 50 H 1.09001 * 109.66832 * 174.54980 * 20 6 5 51 51 H 0.97006 * 120.00109 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0465 -0.7290 -1.2444 5 6 3.5706 -0.8444 -1.1672 6 6 3.9602 -1.6608 0.0673 7 1 5.0446 -1.7625 0.1088 8 7 3.3471 -2.9890 -0.0115 9 6 3.9052 -4.0285 0.6402 10 8 4.9152 -3.8643 1.2913 11 6 3.2749 -5.3949 0.5587 12 6 1.8492 -5.3325 1.1116 13 6 1.1999 -6.7152 0.9953 14 7 2.0628 -7.7004 1.6613 15 6 1.5672 -8.5141 2.6146 16 7 0.2491 -8.4986 2.8954 17 8 2.3092 -9.2621 3.2213 18 6 3.4762 -7.7814 1.2685 19 6 4.1004 -6.3870 1.3812 20 6 3.4659 -0.9374 1.3292 21 7 2.0225 -0.6980 1.1955 22 6 1.1532 -1.1123 2.1691 23 1 0.2084 -1.5581 1.8954 24 6 1.4842 -0.9543 3.5079 25 7 1.1061 -1.8549 4.3900 26 14 2.4661 0.5368 4.0575 27 1 1.5452 1.6792 4.2858 28 1 3.1834 0.2197 5.3185 29 1 3.4502 0.8968 3.0053 30 1 -0.3634 0.5095 0.8924 31 1 -0.3633 0.5182 -0.8875 32 1 -0.3634 -1.0276 -0.0050 33 1 1.6079 -1.7258 -1.2903 34 1 1.7684 -0.1677 -2.1365 35 1 3.9429 -1.3410 -2.0632 36 1 4.0071 0.1518 -1.0961 37 1 2.5395 -3.1204 -0.5326 38 1 3.2470 -5.7206 -0.4812 39 1 1.8779 -5.0309 2.1586 40 1 1.2687 -4.6086 0.5397 41 1 1.0879 -6.9790 -0.0563 42 1 0.2212 -6.7030 1.4752 43 1 -0.3309 -7.8513 2.4648 44 1 -0.1195 -9.1347 3.5280 45 1 3.5499 -8.1323 0.2392 46 1 4.0020 -8.4716 1.9283 47 1 5.1217 -6.4135 1.0012 48 1 4.1083 -6.0756 2.4258 49 1 3.9859 0.0146 1.4354 50 1 3.6537 -1.5583 2.2052 51 1 1.3377 -1.7447 5.3255 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072062500.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:36:19 Heat of formation + Delta-G solvation = -46.749393 kcal Electronic energy + Delta-G solvation = -32041.512131 eV Core-core repulsion = 27976.126896 eV Total energy + Delta-G solvation = -4065.385235 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.47279 -39.57126 -38.01814 -36.74828 -34.22166 -33.93013 -32.77187 -32.46765 -30.94211 -30.72264 -30.42994 -26.64786 -25.75774 -24.80198 -23.24389 -22.48083 -22.08662 -20.65964 -20.21393 -19.39984 -18.91305 -18.41986 -16.99762 -16.79196 -16.47149 -15.45645 -15.41273 -15.22305 -14.88535 -14.59629 -14.38567 -14.21926 -13.89973 -13.64306 -13.58677 -13.44279 -13.19459 -12.95702 -12.85677 -12.43979 -12.27120 -12.19810 -11.76030 -11.69191 -11.39015 -11.24942 -11.19638 -10.95827 -10.66640 -10.65238 -10.53606 -10.49146 -10.28670 -10.12674 -9.93834 -9.82030 -9.67273 -9.52439 -9.26244 -8.58653 -8.55098 -8.26437 -6.68537 -6.09972 -3.39429 2.80152 3.12780 3.24554 3.41017 3.52192 3.55492 3.70294 4.11739 4.58267 4.74771 4.77325 4.89835 4.95384 5.10627 5.18596 5.26340 5.29038 5.31458 5.37010 5.42926 5.44103 5.55342 5.69693 5.81475 5.82529 5.91468 5.96568 6.01890 6.04896 6.16568 6.24846 6.31135 6.33101 6.37014 6.46347 6.46840 6.49513 6.51952 6.56900 6.79714 6.91917 6.92915 6.97762 7.04681 7.12214 7.85571 8.00927 8.06223 8.38907 8.63771 8.76834 8.99094 9.71952 10.21127 11.05189 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011795 B = 0.004086 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.262851 B = 6851.424045 C = 7624.547754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.161 3.839 3 H 0.025 0.975 4 C -0.129 4.129 5 C -0.119 4.119 6 C 0.126 3.874 7 H 0.076 0.924 8 N -0.700 5.700 9 C 0.521 3.479 10 O -0.549 6.549 11 C -0.101 4.101 12 C -0.124 4.124 13 C 0.116 3.884 14 N -0.626 5.626 15 C 0.711 3.289 16 N -0.868 5.868 17 O -0.599 6.599 18 C 0.130 3.870 19 C -0.114 4.114 20 C 0.135 3.865 21 N -0.590 5.590 22 C -0.272 4.272 23 H 0.075 0.925 24 C 0.054 3.946 25 N -0.876 5.876 26 Si 0.840 3.160 27 H -0.290 1.290 28 H -0.298 1.298 29 H -0.262 1.262 30 H 0.062 0.938 31 H 0.036 0.964 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.069 0.931 37 H 0.396 0.604 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.397 0.603 44 H 0.412 0.588 45 H 0.064 0.936 46 H 0.095 0.905 47 H 0.080 0.920 48 H 0.077 0.923 49 H 0.029 0.971 50 H 0.072 0.928 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.534 -7.165 -13.568 15.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 H 0.042 0.958 4 C -0.168 4.168 5 C -0.157 4.157 6 C 0.019 3.981 7 H 0.094 0.906 8 N -0.350 5.350 9 C 0.306 3.694 10 O -0.426 6.426 11 C -0.123 4.123 12 C -0.163 4.163 13 C -0.008 4.008 14 N -0.364 5.364 15 C 0.411 3.589 16 N -0.438 5.438 17 O -0.478 6.478 18 C 0.007 3.993 19 C -0.153 4.153 20 C 0.008 3.992 21 N -0.314 5.314 22 C -0.400 4.400 23 H 0.092 0.908 24 C -0.149 4.149 25 N -0.514 5.514 26 Si 0.667 3.333 27 H -0.217 1.217 28 H -0.225 1.225 29 H -0.187 1.187 30 H 0.081 0.919 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.231 0.769 38 H 0.108 0.892 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.087 0.913 42 H 0.098 0.902 43 H 0.228 0.772 44 H 0.243 0.757 45 H 0.082 0.918 46 H 0.113 0.887 47 H 0.099 0.901 48 H 0.096 0.904 49 H 0.047 0.953 50 H 0.090 0.910 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.220 -7.539 -12.614 14.696 hybrid contribution -0.425 1.199 0.361 1.322 sum -0.645 -6.340 -12.253 13.811 Atomic orbital electron populations 1.21739 0.95467 1.01551 1.00176 1.20593 0.93456 0.93362 0.87053 0.95785 1.22024 0.94937 1.00862 0.98964 1.21684 0.97146 1.00048 0.96791 1.21568 0.96997 0.82345 0.97154 0.90594 1.45799 1.29550 1.08228 1.51463 1.20368 0.84200 0.86077 0.78716 1.90664 1.25751 1.85262 1.40966 1.21248 0.96515 0.93396 1.01133 1.21883 0.93793 0.96136 1.04439 1.21663 0.93425 0.88242 0.97447 1.47265 1.11166 1.37893 1.40121 1.15833 0.82557 0.80684 0.79823 1.43152 1.07821 1.41531 1.51307 1.90932 1.57895 1.45032 1.53933 1.21510 0.79809 0.97747 1.00223 1.21746 0.98783 0.92915 1.01848 1.21756 0.85231 0.96531 0.95668 1.44315 1.01918 1.65247 1.19926 1.18438 1.02382 1.35036 0.84160 0.90804 1.25579 0.96559 0.96745 0.96034 1.70046 1.46981 1.31356 1.03063 0.87415 0.80653 0.87087 0.78137 1.21692 1.22513 1.18713 0.91897 0.94495 0.92708 0.92392 0.92699 0.92669 0.91230 0.76926 0.89207 0.89471 0.89776 0.91287 0.90156 0.77200 0.75675 0.91784 0.88671 0.90116 0.90417 0.95289 0.90964 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 8.08 37.16 0.30 -1.89 16 2 C 0.16 2.83 3.49 -67.60 -0.24 2.59 16 3 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 4 C -0.13 -1.78 5.21 -26.61 -0.14 -1.92 16 5 C -0.12 -1.62 5.58 -26.69 -0.15 -1.77 16 6 C 0.13 2.12 2.81 -67.59 -0.19 1.93 16 7 H 0.08 1.33 7.58 -51.93 -0.39 0.93 16 8 N -0.70 -10.95 4.81 -53.47 -0.26 -11.20 16 9 C 0.52 8.80 7.13 -10.98 -0.08 8.72 16 10 O -0.55 -11.49 15.64 5.56 0.09 -11.40 16 11 C -0.10 -1.32 2.49 -91.73 -0.23 -1.55 16 12 C -0.12 -1.61 5.27 -26.61 -0.14 -1.75 16 13 C 0.12 1.17 6.39 -3.71 -0.02 1.15 16 14 N -0.63 -7.82 2.97 -178.50 -0.53 -8.35 16 15 C 0.71 10.20 8.57 -86.92 -0.75 9.45 16 16 N -0.87 -8.95 8.78 27.63 0.24 -8.70 16 17 O -0.60 -11.00 16.60 5.29 0.09 -10.91 16 18 C 0.13 1.58 6.43 -3.72 -0.02 1.56 16 19 C -0.11 -1.56 4.65 -26.61 -0.12 -1.68 16 20 C 0.13 2.84 4.24 -3.49 -0.01 2.82 16 21 N -0.59 -12.51 2.37 -164.51 -0.39 -12.90 16 22 C -0.27 -6.80 8.41 -15.06 -0.13 -6.93 16 23 H 0.07 1.96 6.84 -52.49 -0.36 1.60 16 24 C 0.05 1.47 4.82 -17.43 -0.08 1.39 16 25 N -0.88 -25.34 13.97 55.49 0.78 -24.57 16 26 Si 0.84 21.32 27.41 -169.99 -4.66 16.66 16 27 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 28 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 29 H -0.26 -6.44 5.25 56.52 0.30 -6.14 16 30 H 0.06 1.18 7.68 -51.93 -0.40 0.78 16 31 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.92 7.42 -51.93 -0.39 0.54 16 33 H 0.06 0.78 6.40 -51.93 -0.33 0.45 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.40 5.42 6.17 -40.82 -0.25 5.17 16 38 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 40 H 0.08 1.05 7.52 -51.93 -0.39 0.66 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.70 5.64 -51.93 -0.29 0.41 16 43 H 0.40 3.18 6.31 -40.82 -0.26 2.92 16 44 H 0.41 3.67 8.93 -40.82 -0.36 3.30 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.09 1.29 7.00 -51.93 -0.36 0.93 16 47 H 0.08 1.06 8.07 -51.93 -0.42 0.64 16 48 H 0.08 1.32 8.13 -51.92 -0.42 0.90 16 49 H 0.03 0.63 6.71 -51.93 -0.35 0.28 16 50 H 0.07 1.80 7.04 -51.93 -0.37 1.44 16 51 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 384.64 15.07 5.80 5.80 Total: -1.00 -33.83 384.64 -9.24 -43.07 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -8.39 Total: 10.39 kcal Atomic # 6 Polarization: 14.12 SS G_CDS: -2.00 Total: 12.12 kcal Atomic # 7 Polarization: -65.57 SS G_CDS: -0.16 Total: -65.73 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: 0.17 Total: -22.32 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.66 Total: 16.66 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.83 -9.24 -43.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072062500.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.678 kcal (2) G-P(sol) polarization free energy of solvation -33.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds