Wall clock time and date at job start Tue Mar 31 2020 21:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.58597 * 2 1 4 4 C 1.53192 * 109.70247 * 239.63822 * 2 1 3 5 5 C 1.53044 * 109.30780 * 185.50906 * 4 2 1 6 6 C 1.53039 * 109.53957 * 61.36663 * 5 4 2 7 7 H 1.08996 * 109.49909 * 178.67634 * 6 5 4 8 8 N 1.46506 * 109.49465 * 58.61445 * 6 5 4 9 9 C 1.34781 * 119.99583 * 155.00210 * 8 6 5 10 10 O 1.21281 * 120.00153 * 359.97438 * 9 8 6 11 11 C 1.50700 * 119.99588 * 180.02562 * 9 8 6 12 12 C 1.53042 * 109.45831 * 300.06459 * 11 9 8 13 13 C 1.53195 * 109.30923 * 178.61798 * 12 11 9 14 14 N 1.46930 * 108.77683 * 54.63622 * 13 12 11 15 15 C 1.34773 * 120.62962 * 126.36746 * 14 13 12 16 16 N 1.34783 * 120.00251 * 4.95551 * 15 14 13 17 17 O 1.21583 * 120.00147 * 184.95056 * 15 14 13 18 18 C 1.46918 * 118.73616 * 306.38668 * 14 13 12 19 19 C 1.53042 * 109.45882 * 179.97438 * 11 9 8 20 20 C 1.53618 * 109.24292 * 298.51020 * 6 5 4 21 21 N 1.46923 * 108.54438 * 54.85573 * 20 6 5 22 22 C 1.36942 * 120.63534 * 126.37196 * 21 20 6 23 23 H 1.08002 * 119.99878 * 221.21960 * 22 21 20 24 24 C 1.38810 * 119.99836 * 41.48665 * 22 21 20 25 25 N 1.31611 * 119.99954 * 214.79295 * 24 22 21 26 26 Si 1.86804 * 119.99777 * 34.79112 * 24 22 21 27 27 H 1.48507 * 109.46888 * 84.47312 * 26 24 22 28 28 H 1.48499 * 109.47123 * 204.46756 * 26 24 22 29 29 H 1.48498 * 109.47327 * 324.47140 * 26 24 22 30 30 H 1.08999 * 109.47660 * 299.72350 * 1 2 3 31 31 H 1.09004 * 109.46877 * 59.71928 * 1 2 3 32 32 H 1.08993 * 109.47355 * 179.71878 * 1 2 3 33 33 H 1.08997 * 109.49648 * 305.45905 * 4 2 1 34 34 H 1.09000 * 109.49609 * 65.52942 * 4 2 1 35 35 H 1.08999 * 109.45526 * 181.38464 * 5 4 2 36 36 H 1.08996 * 109.45973 * 301.35775 * 5 4 2 37 37 H 0.97001 * 119.99972 * 335.00079 * 8 6 5 38 38 H 1.09000 * 109.46281 * 60.02497 * 11 9 8 39 39 H 1.08998 * 109.49883 * 298.56813 * 12 11 9 40 40 H 1.08999 * 109.49602 * 58.66537 * 12 11 9 41 41 H 1.08996 * 109.58646 * 294.84591 * 13 12 11 42 42 H 1.09006 * 109.70244 * 174.49237 * 13 12 11 43 43 H 0.96997 * 119.99830 * 354.91070 * 16 15 14 44 44 H 0.96994 * 120.00229 * 174.91715 * 16 15 14 45 45 H 1.08994 * 109.59082 * 293.82023 * 18 14 13 46 46 H 1.09001 * 109.70371 * 173.46631 * 18 14 13 47 47 H 1.08997 * 109.49982 * 301.33567 * 19 11 9 48 48 H 1.09011 * 109.49507 * 61.43360 * 19 11 9 49 49 H 1.09001 * 109.74293 * 295.11689 * 20 6 5 50 50 H 1.09001 * 109.66832 * 174.54980 * 20 6 5 51 51 H 0.97006 * 120.00109 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0465 -0.7290 -1.2444 5 6 3.5706 -0.8444 -1.1672 6 6 3.9602 -1.6608 0.0673 7 1 5.0446 -1.7625 0.1088 8 7 3.3471 -2.9890 -0.0115 9 6 3.9052 -4.0285 0.6402 10 8 4.9152 -3.8643 1.2913 11 6 3.2749 -5.3949 0.5587 12 6 1.8492 -5.3325 1.1116 13 6 1.1999 -6.7152 0.9953 14 7 2.0628 -7.7004 1.6613 15 6 1.5672 -8.5141 2.6146 16 7 0.2491 -8.4986 2.8954 17 8 2.3092 -9.2621 3.2213 18 6 3.4762 -7.7814 1.2685 19 6 4.1004 -6.3870 1.3812 20 6 3.4659 -0.9374 1.3292 21 7 2.0225 -0.6980 1.1955 22 6 1.1532 -1.1123 2.1691 23 1 0.2084 -1.5581 1.8954 24 6 1.4842 -0.9543 3.5079 25 7 1.1061 -1.8549 4.3900 26 14 2.4661 0.5368 4.0575 27 1 1.5452 1.6792 4.2858 28 1 3.1834 0.2197 5.3185 29 1 3.4502 0.8968 3.0053 30 1 -0.3634 0.5095 0.8924 31 1 -0.3633 0.5182 -0.8875 32 1 -0.3634 -1.0276 -0.0050 33 1 1.6079 -1.7258 -1.2903 34 1 1.7684 -0.1677 -2.1365 35 1 3.9429 -1.3410 -2.0632 36 1 4.0071 0.1518 -1.0961 37 1 2.5395 -3.1204 -0.5326 38 1 3.2470 -5.7206 -0.4812 39 1 1.8779 -5.0309 2.1586 40 1 1.2687 -4.6086 0.5397 41 1 1.0879 -6.9790 -0.0563 42 1 0.2212 -6.7030 1.4752 43 1 -0.3309 -7.8513 2.4648 44 1 -0.1195 -9.1347 3.5280 45 1 3.5499 -8.1323 0.2392 46 1 4.0020 -8.4716 1.9283 47 1 5.1217 -6.4135 1.0012 48 1 4.1083 -6.0756 2.4258 49 1 3.9859 0.0146 1.4354 50 1 3.6537 -1.5583 2.2052 51 1 1.3377 -1.7447 5.3255 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072062500.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:36:18 Heat of formation + Delta-G solvation = -72.847073 kcal Electronic energy + Delta-G solvation = -32042.643812 eV Core-core repulsion = 27976.126896 eV Total energy + Delta-G solvation = -4066.516915 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.61162 -40.85737 -39.41399 -37.96484 -35.76714 -35.01625 -34.45606 -33.61395 -32.47800 -32.05483 -31.65292 -28.02999 -27.10797 -26.33411 -24.30229 -24.04253 -23.25056 -22.03542 -21.48020 -20.46566 -20.44068 -19.42238 -18.33712 -18.15999 -17.87181 -17.01378 -16.75597 -16.48219 -16.17358 -15.97254 -15.76870 -15.41192 -15.29593 -15.06123 -14.89448 -14.74518 -14.44288 -14.36705 -14.18838 -13.92282 -13.62705 -13.40251 -13.33656 -12.92808 -12.85579 -12.72408 -12.55798 -12.45894 -12.26039 -12.12108 -11.81561 -11.78414 -11.62942 -11.56241 -11.32016 -11.29170 -11.10605 -10.70573 -10.64328 -10.46845 -9.86982 -9.57105 -8.51355 -8.23636 -5.44447 1.30861 1.39241 1.43518 1.76897 1.86367 2.14369 2.43895 2.48756 2.98882 3.25330 3.46648 3.66783 3.77280 3.84240 4.01952 4.08601 4.09789 4.18839 4.32293 4.35288 4.41931 4.43855 4.63592 4.66120 4.68352 4.75676 4.78280 4.83376 4.86082 4.88015 5.00013 5.05314 5.09519 5.13886 5.17294 5.20932 5.28788 5.34759 5.38924 5.51935 5.61065 5.69222 5.75310 5.87576 5.96952 6.03665 6.32759 6.77214 6.91013 7.07869 7.47008 7.61979 7.73261 8.24504 8.95262 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011795 B = 0.004086 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.262851 B = 6851.424045 C = 7624.547754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.151 3.849 3 H 0.024 0.976 4 C -0.118 4.118 5 C -0.110 4.110 6 C 0.131 3.869 7 H 0.068 0.932 8 N -0.690 5.690 9 C 0.510 3.490 10 O -0.598 6.598 11 C -0.091 4.091 12 C -0.116 4.116 13 C 0.119 3.881 14 N -0.627 5.627 15 C 0.700 3.300 16 N -0.851 5.851 17 O -0.647 6.647 18 C 0.135 3.865 19 C -0.108 4.108 20 C 0.137 3.863 21 N -0.597 5.597 22 C -0.230 4.230 23 H 0.061 0.939 24 C 0.000 4.000 25 N -0.920 5.920 26 Si 0.876 3.124 27 H -0.291 1.291 28 H -0.318 1.318 29 H -0.251 1.251 30 H 0.031 0.969 31 H 0.075 0.925 32 H 0.050 0.950 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.409 0.591 38 H 0.140 0.860 39 H 0.028 0.972 40 H 0.095 0.905 41 H 0.114 0.886 42 H 0.095 0.905 43 H 0.410 0.590 44 H 0.419 0.581 45 H 0.105 0.895 46 H 0.074 0.926 47 H 0.085 0.915 48 H 0.027 0.973 49 H 0.022 0.978 50 H 0.021 0.979 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.712 -7.096 -18.711 20.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.047 3.953 3 H 0.042 0.958 4 C -0.157 4.157 5 C -0.147 4.147 6 C 0.025 3.975 7 H 0.086 0.914 8 N -0.340 5.340 9 C 0.298 3.702 10 O -0.479 6.479 11 C -0.112 4.112 12 C -0.155 4.155 13 C -0.003 4.003 14 N -0.365 5.365 15 C 0.399 3.601 16 N -0.422 5.422 17 O -0.530 6.530 18 C 0.012 3.988 19 C -0.147 4.147 20 C 0.010 3.990 21 N -0.322 5.322 22 C -0.360 4.360 23 H 0.079 0.921 24 C -0.198 4.198 25 N -0.563 5.563 26 Si 0.705 3.295 27 H -0.219 1.219 28 H -0.246 1.246 29 H -0.176 1.176 30 H 0.051 0.949 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.110 0.890 35 H 0.108 0.892 36 H 0.093 0.907 37 H 0.247 0.753 38 H 0.158 0.842 39 H 0.047 0.953 40 H 0.113 0.887 41 H 0.132 0.868 42 H 0.113 0.887 43 H 0.244 0.756 44 H 0.251 0.749 45 H 0.123 0.877 46 H 0.093 0.907 47 H 0.103 0.897 48 H 0.046 0.954 49 H 0.040 0.960 50 H 0.040 0.960 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.452 -7.407 -17.843 19.373 hybrid contribution -0.071 1.255 1.912 2.288 sum -1.522 -6.151 -15.931 17.145 Atomic orbital electron populations 1.21686 0.94669 1.01430 1.00606 1.20912 0.94226 0.93491 0.86709 0.95784 1.21933 0.94631 1.01307 0.97831 1.21667 0.97246 0.99949 0.95876 1.21398 0.96570 0.82930 0.96636 0.91367 1.45731 1.29785 1.07522 1.51009 1.21160 0.83645 0.87748 0.77663 1.90646 1.28158 1.86190 1.42904 1.21283 0.95618 0.90688 1.03657 1.21780 0.94323 0.98483 1.00868 1.21867 0.93021 0.85519 0.99935 1.47367 1.11578 1.37810 1.39710 1.16141 0.83349 0.80692 0.79868 1.42990 1.06628 1.41611 1.50950 1.90896 1.59325 1.47171 1.55634 1.21512 0.79463 0.95898 1.01938 1.21649 0.99699 0.94281 0.99039 1.21599 0.85304 0.95814 0.96259 1.44449 1.01445 1.65948 1.20354 1.18424 1.01528 1.31624 0.84402 0.92118 1.26021 0.98387 0.98515 0.96882 1.70136 1.50301 1.33029 1.02847 0.86799 0.79822 0.85519 0.77314 1.21868 1.24627 1.17568 0.94950 0.90608 0.93108 0.91482 0.89025 0.89234 0.90670 0.75334 0.84203 0.95284 0.88660 0.86776 0.88733 0.75635 0.74857 0.87699 0.90733 0.89685 0.95381 0.96028 0.96012 0.93747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.81 8.08 71.98 0.58 -3.23 16 2 C 0.15 4.81 3.49 44.97 0.16 4.97 16 3 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 4 C -0.12 -2.63 5.21 30.67 0.16 -2.47 16 5 C -0.11 -2.48 5.58 30.62 0.17 -2.31 16 6 C 0.13 4.20 2.81 45.21 0.13 4.33 16 7 H 0.07 2.33 7.58 -2.39 -0.02 2.31 16 8 N -0.69 -20.19 4.81 -441.47 -2.12 -22.32 16 9 C 0.51 17.04 7.13 87.66 0.62 17.66 16 10 O -0.60 -25.99 15.64 -3.03 -0.05 -26.04 16 11 C -0.09 -2.22 2.49 -11.51 -0.03 -2.25 16 12 C -0.12 -2.87 5.27 30.67 0.16 -2.70 16 13 C 0.12 2.04 6.39 86.36 0.55 2.60 16 14 N -0.63 -14.80 2.97 -836.92 -2.49 -17.28 16 15 C 0.70 19.83 8.57 179.05 1.53 21.36 16 16 N -0.85 -16.61 8.78 -184.75 -1.62 -18.23 16 17 O -0.65 -24.39 16.60 -3.98 -0.07 -24.45 16 18 C 0.13 3.11 6.43 86.36 0.56 3.67 16 19 C -0.11 -2.96 4.65 30.67 0.14 -2.82 16 20 C 0.14 5.79 4.24 86.51 0.37 6.16 16 21 N -0.60 -24.86 2.37 -674.39 -1.60 -26.46 16 22 C -0.23 -11.65 8.41 84.03 0.71 -10.94 16 23 H 0.06 3.25 6.84 -2.91 -0.02 3.23 16 24 C 0.00 0.02 4.82 84.86 0.41 0.43 16 25 N -0.92 -56.15 13.97 21.65 0.30 -55.85 16 26 Si 0.88 45.65 27.41 68.60 1.88 47.53 16 27 H -0.29 -15.04 7.11 99.48 0.71 -14.33 16 28 H -0.32 -17.50 7.11 99.48 0.71 -16.79 16 29 H -0.25 -12.41 5.25 99.48 0.52 -11.89 16 30 H 0.03 1.15 7.68 -2.39 -0.02 1.13 16 31 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.05 1.56 7.42 -2.39 -0.02 1.54 16 33 H 0.07 1.41 6.40 -2.39 -0.02 1.40 16 34 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.07 1.68 8.14 -2.39 -0.02 1.67 16 37 H 0.41 9.65 6.17 -92.71 -0.57 9.08 16 38 H 0.14 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.09 2.13 7.52 -2.39 -0.02 2.12 16 41 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.09 1.37 5.64 -2.38 -0.01 1.36 16 43 H 0.41 5.75 6.31 -92.71 -0.59 5.17 16 44 H 0.42 7.12 8.93 -92.71 -0.83 6.30 16 45 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.07 2.06 7.00 -2.39 -0.02 2.05 16 47 H 0.08 2.24 8.07 -2.39 -0.02 2.22 16 48 H 0.03 1.03 8.13 -2.38 -0.02 1.01 16 49 H 0.02 0.95 6.71 -2.39 -0.02 0.93 16 50 H 0.02 1.12 7.04 -2.39 -0.02 1.11 16 51 H 0.25 15.30 8.31 -92.70 -0.77 14.53 16 Total: -1.00 -82.47 384.64 -0.75 -83.22 By element: Atomic # 1 Polarization: 26.64 SS G_CDS: -1.20 Total: 25.43 kcal Atomic # 6 Polarization: 28.23 SS G_CDS: 6.22 Total: 34.45 kcal Atomic # 7 Polarization: -132.61 SS G_CDS: -7.53 Total: -140.14 kcal Atomic # 8 Polarization: -50.38 SS G_CDS: -0.11 Total: -50.49 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.88 Total: 47.53 kcal Total: -82.47 -0.75 -83.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072062500.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.370 kcal (2) G-P(sol) polarization free energy of solvation -82.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds