Wall clock time and date at job start Tue Mar 31 2020 21:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 110.63804 * 2 1 4 4 C 1.54327 * 110.87232 * 236.75347 * 2 1 3 5 5 N 1.47017 * 107.26979 * 219.37189 * 4 2 1 6 6 C 1.36935 * 125.64534 * 178.89887 * 5 4 2 7 7 H 1.08004 * 120.00136 * 180.02562 * 6 5 4 8 8 C 1.38811 * 120.00124 * 0.02562 * 6 5 4 9 9 N 1.31613 * 120.00259 * 0.02562 * 8 6 5 10 10 Si 1.86809 * 120.00025 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47057 * 0.02562 * 10 8 6 12 12 H 1.48493 * 109.46927 * 120.00327 * 10 8 6 13 13 H 1.48497 * 109.46966 * 240.00129 * 10 8 6 14 14 C 1.47422 * 108.70746 * 358.94066 * 5 4 2 15 15 C 1.54910 * 104.83138 * 24.12589 * 14 5 4 16 16 H 1.09001 * 111.03455 * 81.07806 * 15 14 5 17 17 C 1.52998 * 111.00903 * 204.91857 * 15 14 5 18 18 N 1.46504 * 109.47066 * 287.20035 * 17 15 14 19 19 C 1.34773 * 120.00245 * 179.97438 * 18 17 15 20 20 O 1.21285 * 119.99782 * 0.02562 * 19 18 17 21 21 C 1.50700 * 120.00312 * 179.97438 * 19 18 17 22 22 H 1.08997 * 109.52185 * 299.92536 * 21 19 18 23 23 C 1.53041 * 109.49819 * 179.83770 * 21 19 18 24 24 C 1.53078 * 109.65808 * 178.74911 * 23 21 19 25 25 C 1.53190 * 109.29076 * 61.15285 * 24 23 21 26 26 N 1.46918 * 108.89881 * 305.57867 * 25 24 23 27 27 C 1.34783 * 120.63256 * 233.55856 * 26 25 24 28 28 N 1.34772 * 119.99963 * 354.77664 * 27 26 25 29 29 O 1.21585 * 119.99948 * 174.76634 * 27 26 25 30 30 C 1.46927 * 118.74059 * 53.53840 * 26 25 24 31 31 H 1.09002 * 109.46528 * 296.85452 * 1 2 3 32 32 H 1.08994 * 109.47119 * 56.85617 * 1 2 3 33 33 H 1.09000 * 109.46866 * 176.85755 * 1 2 3 34 34 H 1.08998 * 109.87798 * 338.79098 * 4 2 1 35 35 H 1.09003 * 109.88266 * 99.95379 * 4 2 1 36 36 H 0.97000 * 120.00531 * 180.02562 * 9 8 6 37 37 H 1.09005 * 110.36682 * 265.29035 * 14 5 4 38 38 H 1.08996 * 110.37033 * 142.97035 * 14 5 4 39 39 H 1.08991 * 109.47670 * 167.19988 * 17 15 14 40 40 H 1.08999 * 109.46966 * 47.19670 * 17 15 14 41 41 H 0.97002 * 119.99707 * 359.97438 * 18 17 15 42 42 H 1.08992 * 109.46111 * 298.70559 * 23 21 19 43 43 H 1.08996 * 109.45775 * 58.68105 * 23 21 19 44 44 H 1.09005 * 109.38964 * 301.28389 * 24 23 21 45 45 H 1.08999 * 109.62370 * 181.17263 * 24 23 21 46 46 H 1.09007 * 109.58626 * 185.71624 * 25 24 23 47 47 H 1.09006 * 109.58575 * 65.44311 * 25 24 23 48 48 H 0.97003 * 119.99816 * 4.96306 * 28 27 26 49 49 H 0.96998 * 119.99776 * 184.97138 * 28 27 26 50 50 H 1.08999 * 109.58424 * 66.17457 * 30 26 25 51 51 H 1.08997 * 109.59221 * 186.46637 * 30 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0799 -0.7906 -1.2060 5 7 3.2494 -1.5469 -0.7354 6 6 4.0116 -2.3929 -1.4961 7 1 4.8542 -2.9046 -1.0550 8 6 3.7012 -2.5927 -2.8343 9 7 2.6747 -1.9688 -3.3720 10 14 4.7404 -3.7473 -3.8718 11 1 5.8266 -4.3206 -3.0372 12 1 3.8880 -4.8445 -4.3959 13 1 5.3324 -2.9951 -5.0071 14 6 3.4653 -1.2447 0.6913 15 6 2.0791 -0.7934 1.2151 16 1 1.4466 -1.6525 1.4387 17 6 2.2237 0.1111 2.4406 18 7 2.6290 -0.6932 3.5961 19 6 2.8187 -0.1047 4.7936 20 8 2.6536 1.0908 4.9147 21 6 3.2351 -0.9321 5.9823 22 1 2.4784 -1.6911 6.1807 23 6 3.3846 -0.0271 7.2074 24 6 3.7771 -0.8686 8.4244 25 6 5.1225 -1.5502 8.1557 26 7 5.0301 -2.3070 6.8998 27 6 5.3552 -3.6144 6.8604 28 7 5.8693 -4.2142 7.9523 29 8 5.1846 -4.2528 5.8397 30 6 4.5761 -1.6117 5.6878 31 1 -0.3632 0.4642 0.9169 32 1 -0.3633 0.5618 -0.8604 33 1 -0.3633 -1.0261 -0.0563 34 1 1.3190 -1.4772 -1.5770 35 1 2.3775 -0.1015 -1.9964 36 1 2.4575 -2.1087 -4.3070 37 1 4.1931 -0.4409 0.8029 38 1 3.7994 -2.1363 1.2217 39 1 1.2693 0.5938 2.6507 40 1 2.9797 0.8713 2.2439 41 1 2.7607 -1.6493 3.4992 42 1 4.1587 0.7162 7.0175 43 1 2.4382 0.4764 7.4046 44 1 3.0142 -1.6268 8.6015 45 1 3.8632 -0.2266 9.3010 46 1 5.3581 -2.2294 8.9751 47 1 5.9041 -0.7952 8.0708 48 1 5.9384 -3.7250 8.7871 49 1 6.1703 -5.1351 7.9034 50 1 5.3113 -0.8600 5.4007 51 1 4.4534 -2.3310 4.8780 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092801246.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:52 Heat of formation + Delta-G solvation = -49.921753 kcal Electronic energy + Delta-G solvation = -30313.634459 eV Core-core repulsion = 26248.111660 eV Total energy + Delta-G solvation = -4065.522799 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.88972 -39.71406 -38.10443 -37.26335 -34.68382 -34.32418 -32.93923 -32.67920 -31.64750 -30.68897 -29.13673 -26.06996 -25.73407 -25.24525 -24.24759 -22.77268 -21.83689 -20.53094 -19.99803 -19.81327 -19.12805 -18.79049 -17.40426 -17.02937 -16.63244 -16.03775 -15.88439 -15.28659 -15.21277 -14.96062 -14.63607 -14.43144 -14.13165 -13.79588 -13.74675 -13.66145 -13.35893 -13.17227 -12.95877 -12.75356 -12.48733 -11.93195 -11.73827 -11.64531 -11.44135 -11.35846 -11.32188 -11.18048 -10.98211 -10.77872 -10.73853 -10.48930 -10.15527 -10.01054 -9.98162 -9.93400 -9.86264 -9.63849 -9.49589 -9.00363 -8.92058 -8.56545 -6.78536 -5.67156 -3.00313 2.31930 2.66143 2.90488 3.21543 3.43064 3.48932 3.51274 3.72356 4.28838 4.36304 4.48356 4.53274 4.59870 4.73826 4.89307 5.01631 5.12746 5.21213 5.24691 5.32006 5.36796 5.42197 5.44545 5.55870 5.57422 5.60100 5.78968 5.80371 5.89027 5.96842 6.01408 6.06243 6.14018 6.22086 6.32228 6.39234 6.47846 6.51667 6.58581 6.62948 6.65999 6.79789 6.98821 7.49331 7.54455 7.61858 7.68095 7.88059 8.22078 8.30099 8.30216 9.26674 9.86930 10.52948 11.44561 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011972 B = 0.002793 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.266444 B =10022.019716 C =12026.705190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.110 4.110 3 H 0.067 0.933 4 C 0.184 3.816 5 N -0.606 5.606 6 C -0.226 4.226 7 H 0.078 0.922 8 C -0.009 4.009 9 N -0.922 5.922 10 Si 0.910 3.090 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.141 3.859 15 C -0.113 4.113 16 H 0.080 0.920 17 C 0.132 3.868 18 N -0.722 5.722 19 C 0.519 3.481 20 O -0.542 6.542 21 C -0.123 4.123 22 H 0.101 0.899 23 C -0.099 4.099 24 C -0.135 4.135 25 C 0.109 3.891 26 N -0.627 5.627 27 C 0.708 3.292 28 N -0.869 5.869 29 O -0.585 6.585 30 C 0.137 3.863 31 H 0.044 0.956 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.049 0.951 35 H 0.041 0.959 36 H 0.251 0.749 37 H 0.019 0.981 38 H 0.037 0.963 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.403 0.597 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.081 0.919 46 H 0.078 0.922 47 H 0.073 0.927 48 H 0.395 0.605 49 H 0.414 0.586 50 H 0.074 0.926 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.473 1.980 27.526 27.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.130 4.130 3 H 0.085 0.915 4 C 0.059 3.941 5 N -0.332 5.332 6 C -0.354 4.354 7 H 0.096 0.904 8 C -0.205 4.205 9 N -0.570 5.570 10 Si 0.741 3.259 11 H -0.205 1.205 12 H -0.218 1.218 13 H -0.218 1.218 14 C 0.015 3.985 15 C -0.133 4.133 16 H 0.098 0.902 17 C 0.009 3.991 18 N -0.373 5.373 19 C 0.303 3.697 20 O -0.420 6.420 21 C -0.145 4.145 22 H 0.119 0.881 23 C -0.137 4.137 24 C -0.174 4.174 25 C -0.014 4.014 26 N -0.365 5.365 27 C 0.408 3.592 28 N -0.439 5.439 29 O -0.462 6.462 30 C 0.014 3.986 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.036 0.964 38 H 0.055 0.945 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.238 0.762 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.087 0.913 45 H 0.099 0.901 46 H 0.096 0.904 47 H 0.091 0.909 48 H 0.225 0.775 49 H 0.246 0.754 50 H 0.092 0.908 51 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.204 2.472 26.599 26.741 hybrid contribution 0.713 -1.201 -0.229 1.415 sum 1.917 1.271 26.370 26.470 Atomic orbital electron populations 1.21690 0.95350 1.01606 1.00501 1.22439 0.95109 0.99100 0.96379 0.91473 1.21216 0.89070 0.93110 0.90700 1.44467 1.32444 1.51615 1.04697 1.19119 1.07422 1.17605 0.91296 0.90407 1.24793 0.98457 1.00381 0.96899 1.69970 1.28848 1.45686 1.12483 0.86055 0.79342 0.80138 0.80336 1.20490 1.21798 1.21811 1.21590 0.92949 0.97120 0.86835 1.22681 0.99461 0.98059 0.93100 0.90157 1.21412 1.00096 0.93776 0.83853 1.46167 1.69323 1.12483 1.09305 1.20317 0.77254 0.88179 0.83906 1.90697 1.51507 1.15095 1.84657 1.21737 0.99238 0.98846 0.94716 0.88102 1.21319 1.03393 0.96984 0.91993 1.21965 0.96927 0.99762 0.98698 1.21696 0.98319 0.95861 0.85551 1.47192 1.70540 1.08225 1.10585 1.15861 0.78098 0.81371 0.83897 1.43161 1.70178 1.18188 1.12387 1.91017 1.60316 1.63484 1.31382 1.21420 0.93554 0.96524 0.87142 0.93703 0.92792 0.92722 0.93327 0.94065 0.93870 0.96358 0.94480 0.91652 0.91343 0.76204 0.90774 0.90586 0.91305 0.90057 0.90428 0.90899 0.77490 0.75371 0.90750 0.87914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 9.17 37.16 0.34 -1.77 16 2 C -0.11 -2.03 3.01 -88.78 -0.27 -2.29 16 3 H 0.07 1.20 8.04 -51.93 -0.42 0.78 16 4 C 0.18 4.46 4.97 -3.07 -0.02 4.44 16 5 N -0.61 -15.60 3.39 -170.08 -0.58 -16.18 16 6 C -0.23 -6.41 10.28 -15.06 -0.15 -6.56 16 7 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 8 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 9 N -0.92 -27.40 10.31 55.49 0.57 -26.83 16 10 Si 0.91 22.54 29.55 -169.99 -5.02 17.51 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 13 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 14 C 0.14 2.90 6.65 -2.53 -0.02 2.88 16 15 C -0.11 -1.90 2.49 -88.47 -0.22 -2.12 16 16 H 0.08 1.35 8.05 -51.93 -0.42 0.93 16 17 C 0.13 1.91 5.13 -4.04 -0.02 1.89 16 18 N -0.72 -9.12 5.41 -60.30 -0.33 -9.45 16 19 C 0.52 6.53 7.16 -10.99 -0.08 6.45 16 20 O -0.54 -8.63 15.98 5.55 0.09 -8.54 16 21 C -0.12 -1.15 2.68 -91.65 -0.25 -1.40 16 22 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 23 C -0.10 -0.79 4.46 -26.67 -0.12 -0.91 16 24 C -0.14 -0.69 6.09 -26.59 -0.16 -0.85 16 25 C 0.11 0.55 6.38 -3.72 -0.02 0.52 16 26 N -0.63 -5.35 2.97 -178.50 -0.53 -5.88 16 27 C 0.71 7.47 8.57 -86.92 -0.74 6.72 16 28 N -0.87 -5.23 8.78 27.63 0.24 -4.99 16 29 O -0.58 -9.09 16.60 5.29 0.09 -9.00 16 30 C 0.14 1.35 5.58 -3.71 -0.02 1.33 16 31 H 0.04 0.61 8.09 -51.93 -0.42 0.19 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.05 0.89 8.07 -51.93 -0.42 0.47 16 34 H 0.05 1.30 7.02 -51.93 -0.36 0.94 16 35 H 0.04 1.12 7.51 -51.93 -0.39 0.73 16 36 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 37 H 0.02 0.39 7.91 -51.93 -0.41 -0.02 16 38 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 40 H 0.07 1.06 7.96 -51.93 -0.41 0.65 16 41 H 0.40 4.67 8.02 -40.82 -0.33 4.35 16 42 H 0.07 0.65 8.13 -51.93 -0.42 0.22 16 43 H 0.08 0.66 8.07 -51.93 -0.42 0.24 16 44 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 46 H 0.08 0.19 5.65 -51.92 -0.29 -0.10 16 47 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.39 1.14 6.32 -40.82 -0.26 0.88 16 49 H 0.41 2.16 8.93 -40.82 -0.36 1.79 16 50 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 51 H 0.10 1.19 6.59 -51.93 -0.34 0.85 16 LS Contribution 397.98 15.07 6.00 6.00 Total: -1.00 -36.20 397.98 -9.92 -46.11 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -8.60 Total: 3.27 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: -1.84 Total: 7.97 kcal Atomic # 7 Polarization: -62.70 SS G_CDS: -0.62 Total: -63.32 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: 0.18 Total: -17.54 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.20 -9.92 -46.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092801246.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.808 kcal (2) G-P(sol) polarization free energy of solvation -36.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds