Wall clock time and date at job start Tue Mar 31 2020 21:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 110.63804 * 2 1 4 4 C 1.54327 * 110.87232 * 236.75347 * 2 1 3 5 5 N 1.47017 * 107.26979 * 219.37189 * 4 2 1 6 6 C 1.36935 * 125.64534 * 178.89887 * 5 4 2 7 7 H 1.08004 * 120.00136 * 180.02562 * 6 5 4 8 8 C 1.38811 * 120.00124 * 0.02562 * 6 5 4 9 9 N 1.31613 * 120.00259 * 0.02562 * 8 6 5 10 10 Si 1.86809 * 120.00025 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47057 * 0.02562 * 10 8 6 12 12 H 1.48493 * 109.46927 * 120.00327 * 10 8 6 13 13 H 1.48497 * 109.46966 * 240.00129 * 10 8 6 14 14 C 1.47422 * 108.70746 * 358.94066 * 5 4 2 15 15 C 1.54910 * 104.83138 * 24.12589 * 14 5 4 16 16 H 1.09001 * 111.03455 * 81.07806 * 15 14 5 17 17 C 1.52998 * 111.00903 * 204.91857 * 15 14 5 18 18 N 1.46504 * 109.47066 * 287.20035 * 17 15 14 19 19 C 1.34773 * 120.00245 * 179.97438 * 18 17 15 20 20 O 1.21285 * 119.99782 * 0.02562 * 19 18 17 21 21 C 1.50700 * 120.00312 * 179.97438 * 19 18 17 22 22 H 1.08997 * 109.52185 * 299.92536 * 21 19 18 23 23 C 1.53041 * 109.49819 * 179.83770 * 21 19 18 24 24 C 1.53078 * 109.65808 * 178.74911 * 23 21 19 25 25 C 1.53190 * 109.29076 * 61.15285 * 24 23 21 26 26 N 1.46918 * 108.89881 * 305.57867 * 25 24 23 27 27 C 1.34783 * 120.63256 * 233.55856 * 26 25 24 28 28 N 1.34772 * 119.99963 * 354.77664 * 27 26 25 29 29 O 1.21585 * 119.99948 * 174.76634 * 27 26 25 30 30 C 1.46927 * 118.74059 * 53.53840 * 26 25 24 31 31 H 1.09002 * 109.46528 * 296.85452 * 1 2 3 32 32 H 1.08994 * 109.47119 * 56.85617 * 1 2 3 33 33 H 1.09000 * 109.46866 * 176.85755 * 1 2 3 34 34 H 1.08998 * 109.87798 * 338.79098 * 4 2 1 35 35 H 1.09003 * 109.88266 * 99.95379 * 4 2 1 36 36 H 0.97000 * 120.00531 * 180.02562 * 9 8 6 37 37 H 1.09005 * 110.36682 * 265.29035 * 14 5 4 38 38 H 1.08996 * 110.37033 * 142.97035 * 14 5 4 39 39 H 1.08991 * 109.47670 * 167.19988 * 17 15 14 40 40 H 1.08999 * 109.46966 * 47.19670 * 17 15 14 41 41 H 0.97002 * 119.99707 * 359.97438 * 18 17 15 42 42 H 1.08992 * 109.46111 * 298.70559 * 23 21 19 43 43 H 1.08996 * 109.45775 * 58.68105 * 23 21 19 44 44 H 1.09005 * 109.38964 * 301.28389 * 24 23 21 45 45 H 1.08999 * 109.62370 * 181.17263 * 24 23 21 46 46 H 1.09007 * 109.58626 * 185.71624 * 25 24 23 47 47 H 1.09006 * 109.58575 * 65.44311 * 25 24 23 48 48 H 0.97003 * 119.99816 * 4.96306 * 28 27 26 49 49 H 0.96998 * 119.99776 * 184.97138 * 28 27 26 50 50 H 1.08999 * 109.58424 * 66.17457 * 30 26 25 51 51 H 1.08997 * 109.59221 * 186.46637 * 30 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0799 -0.7906 -1.2060 5 7 3.2494 -1.5469 -0.7354 6 6 4.0116 -2.3929 -1.4961 7 1 4.8542 -2.9046 -1.0550 8 6 3.7012 -2.5927 -2.8343 9 7 2.6747 -1.9688 -3.3720 10 14 4.7404 -3.7473 -3.8718 11 1 5.8266 -4.3206 -3.0372 12 1 3.8880 -4.8445 -4.3959 13 1 5.3324 -2.9951 -5.0071 14 6 3.4653 -1.2447 0.6913 15 6 2.0791 -0.7934 1.2151 16 1 1.4466 -1.6525 1.4387 17 6 2.2237 0.1111 2.4406 18 7 2.6290 -0.6932 3.5961 19 6 2.8187 -0.1047 4.7936 20 8 2.6536 1.0908 4.9147 21 6 3.2351 -0.9321 5.9823 22 1 2.4784 -1.6911 6.1807 23 6 3.3846 -0.0271 7.2074 24 6 3.7771 -0.8686 8.4244 25 6 5.1225 -1.5502 8.1557 26 7 5.0301 -2.3070 6.8998 27 6 5.3552 -3.6144 6.8604 28 7 5.8693 -4.2142 7.9523 29 8 5.1846 -4.2528 5.8397 30 6 4.5761 -1.6117 5.6878 31 1 -0.3632 0.4642 0.9169 32 1 -0.3633 0.5618 -0.8604 33 1 -0.3633 -1.0261 -0.0563 34 1 1.3190 -1.4772 -1.5770 35 1 2.3775 -0.1015 -1.9964 36 1 2.4575 -2.1087 -4.3070 37 1 4.1931 -0.4409 0.8029 38 1 3.7994 -2.1363 1.2217 39 1 1.2693 0.5938 2.6507 40 1 2.9797 0.8713 2.2439 41 1 2.7607 -1.6493 3.4992 42 1 4.1587 0.7162 7.0175 43 1 2.4382 0.4764 7.4046 44 1 3.0142 -1.6268 8.6015 45 1 3.8632 -0.2266 9.3010 46 1 5.3581 -2.2294 8.9751 47 1 5.9041 -0.7952 8.0708 48 1 5.9384 -3.7250 8.7871 49 1 6.1703 -5.1351 7.9034 50 1 5.3113 -0.8600 5.4007 51 1 4.4534 -2.3310 4.8780 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092801246.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:51 Heat of formation + Delta-G solvation = -77.192853 kcal Electronic energy + Delta-G solvation = -30314.817023 eV Core-core repulsion = 26248.111660 eV Total energy + Delta-G solvation = -4066.705362 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.68212 -40.72191 -39.63709 -38.09950 -36.06568 -35.08801 -34.67251 -33.31699 -32.55845 -32.39155 -30.56258 -27.87153 -26.80378 -26.34985 -25.29846 -24.19818 -22.63828 -21.65352 -21.55731 -20.73429 -20.39716 -19.44692 -18.87310 -18.13569 -17.77965 -17.26041 -16.79912 -16.63016 -16.15068 -16.04828 -15.75096 -15.58443 -15.32330 -15.21149 -14.81977 -14.55460 -14.39851 -14.31672 -14.12930 -14.06561 -13.58439 -13.45063 -13.24272 -13.11441 -12.86619 -12.70197 -12.50521 -12.41461 -12.00522 -11.95232 -11.91203 -11.85411 -11.65927 -11.56865 -11.43278 -11.37397 -11.30645 -10.80109 -10.71195 -10.70491 -10.07692 -9.64250 -8.89672 -7.85489 -5.20869 1.44419 1.45195 1.49115 1.55832 1.81113 2.11783 2.21730 2.48436 3.22647 3.32244 3.59162 3.61147 3.69699 3.79490 3.83806 3.93147 3.95411 4.04349 4.12814 4.24982 4.38037 4.49712 4.52036 4.56415 4.60549 4.72863 4.75618 4.76304 4.81835 4.86060 4.91398 4.96573 5.05662 5.08785 5.15320 5.19092 5.34008 5.37232 5.41355 5.43700 5.46700 5.49663 5.71776 5.81423 5.82916 6.01680 6.20075 6.51100 6.91116 7.10588 7.19456 7.61325 7.77782 8.42151 9.24806 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011972 B = 0.002793 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.266444 B =10022.019716 C =12026.705190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.100 4.100 3 H 0.076 0.924 4 C 0.192 3.808 5 N -0.629 5.629 6 C -0.242 4.242 7 H 0.080 0.920 8 C -0.066 4.066 9 N -0.950 5.950 10 Si 0.977 3.023 11 H -0.267 1.267 12 H -0.291 1.291 13 H -0.292 1.292 14 C 0.137 3.863 15 C -0.091 4.091 16 H 0.086 0.914 17 C 0.145 3.855 18 N -0.719 5.719 19 C 0.520 3.480 20 O -0.574 6.574 21 C -0.111 4.111 22 H 0.110 0.890 23 C -0.098 4.098 24 C -0.126 4.126 25 C 0.103 3.897 26 N -0.624 5.624 27 C 0.700 3.300 28 N -0.847 5.847 29 O -0.643 6.643 30 C 0.139 3.861 31 H 0.076 0.924 32 H 0.054 0.946 33 H 0.046 0.954 34 H 0.016 0.984 35 H 0.000 1.000 36 H 0.246 0.754 37 H 0.019 0.981 38 H 0.042 0.958 39 H 0.077 0.923 40 H 0.060 0.940 41 H 0.409 0.591 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.106 0.894 46 H 0.108 0.892 47 H 0.083 0.917 48 H 0.412 0.588 49 H 0.420 0.580 50 H 0.072 0.928 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.769 1.935 30.860 30.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.120 4.120 3 H 0.094 0.906 4 C 0.067 3.933 5 N -0.355 5.355 6 C -0.371 4.371 7 H 0.098 0.902 8 C -0.259 4.259 9 N -0.599 5.599 10 Si 0.805 3.195 11 H -0.192 1.192 12 H -0.218 1.218 13 H -0.219 1.219 14 C 0.012 3.988 15 C -0.111 4.111 16 H 0.104 0.896 17 C 0.021 3.979 18 N -0.370 5.370 19 C 0.307 3.693 20 O -0.453 6.453 21 C -0.133 4.133 22 H 0.128 0.872 23 C -0.136 4.136 24 C -0.164 4.164 25 C -0.019 4.019 26 N -0.361 5.361 27 C 0.400 3.600 28 N -0.419 5.419 29 O -0.525 6.525 30 C 0.015 3.985 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.034 0.966 35 H 0.019 0.981 36 H 0.056 0.944 37 H 0.036 0.964 38 H 0.060 0.940 39 H 0.095 0.905 40 H 0.078 0.922 41 H 0.245 0.755 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.124 0.876 46 H 0.126 0.874 47 H 0.101 0.899 48 H 0.246 0.754 49 H 0.253 0.747 50 H 0.090 0.910 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.525 2.435 30.036 30.173 hybrid contribution 0.673 -1.156 -1.218 1.809 sum 2.198 1.279 28.818 28.930 Atomic orbital electron populations 1.21635 0.92920 1.01610 1.02255 1.22316 0.97010 0.98581 0.94116 0.90600 1.20986 0.87999 0.91975 0.92358 1.44792 1.32557 1.51370 1.06794 1.19488 1.07757 1.17842 0.92017 0.90245 1.25636 0.99877 1.02260 0.98149 1.70192 1.30342 1.47050 1.12327 0.85028 0.77984 0.77979 0.78478 1.19164 1.21764 1.21877 1.21755 0.95235 0.97316 0.84460 1.22473 0.96826 0.98337 0.93430 0.89583 1.21159 1.00487 0.92984 0.83307 1.46126 1.69172 1.12682 1.09040 1.20825 0.76223 0.87963 0.84333 1.90683 1.52923 1.16584 1.85156 1.21680 0.99020 0.98722 0.93858 0.87233 1.21331 1.02874 0.96938 0.92442 1.21937 0.96805 0.99676 0.98029 1.22011 0.98705 0.96505 0.84663 1.47201 1.69788 1.07802 1.11323 1.16130 0.78143 0.81748 0.83994 1.42944 1.68568 1.18418 1.11922 1.90977 1.62766 1.64946 1.33785 1.21257 0.93788 0.95940 0.87529 0.90483 0.92647 0.93444 0.96604 0.98130 0.94430 0.96358 0.93983 0.90482 0.92210 0.75497 0.91583 0.91289 0.91092 0.87557 0.87358 0.89903 0.75389 0.74736 0.90991 0.90038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.83 9.17 71.98 0.66 -3.17 16 2 C -0.10 -3.66 3.01 -9.60 -0.03 -3.68 16 3 H 0.08 2.65 8.04 -2.39 -0.02 2.63 16 4 C 0.19 9.67 4.97 86.73 0.43 10.10 16 5 N -0.63 -33.29 3.39 -692.00 -2.35 -35.64 16 6 C -0.24 -14.05 10.28 84.03 0.86 -13.19 16 7 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 8 C -0.07 -3.89 5.49 84.86 0.47 -3.43 16 9 N -0.95 -58.61 10.31 21.65 0.22 -58.39 16 10 Si 0.98 47.29 29.55 68.60 2.03 49.32 16 11 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 12 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 13 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 14 C 0.14 5.66 6.65 86.86 0.58 6.24 16 15 C -0.09 -2.98 2.49 -9.40 -0.02 -3.01 16 16 H 0.09 2.77 8.05 -2.39 -0.02 2.75 16 17 C 0.14 3.97 5.13 86.38 0.44 4.41 16 18 N -0.72 -17.39 5.41 -463.07 -2.50 -19.89 16 19 C 0.52 12.54 7.16 87.66 0.63 13.16 16 20 O -0.57 -17.66 15.98 -3.04 -0.05 -17.71 16 21 C -0.11 -1.93 2.68 -11.46 -0.03 -1.96 16 22 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 23 C -0.10 -1.36 4.46 30.63 0.14 -1.22 16 24 C -0.13 -0.87 6.09 30.68 0.19 -0.68 16 25 C 0.10 0.68 6.38 86.36 0.55 1.23 16 26 N -0.62 -9.52 2.97 -836.90 -2.49 -12.01 16 27 C 0.70 13.86 8.57 179.05 1.53 15.40 16 28 N -0.85 -8.20 8.78 -184.75 -1.62 -9.83 16 29 O -0.64 -20.09 16.60 -3.98 -0.07 -20.15 16 30 C 0.14 2.64 5.58 86.36 0.48 3.12 16 31 H 0.08 1.86 8.09 -2.39 -0.02 1.84 16 32 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.05 1.50 8.07 -2.39 -0.02 1.48 16 34 H 0.02 0.89 7.02 -2.39 -0.02 0.87 16 35 H 0.00 0.03 7.51 -2.39 -0.02 0.01 16 36 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 37 H 0.02 0.77 7.91 -2.38 -0.02 0.75 16 38 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.08 2.01 8.08 -2.39 -0.02 1.99 16 40 H 0.06 1.79 7.96 -2.39 -0.02 1.77 16 41 H 0.41 9.14 8.02 -92.71 -0.74 8.39 16 42 H 0.07 1.04 8.13 -2.39 -0.02 1.02 16 43 H 0.07 1.08 8.07 -2.39 -0.02 1.06 16 44 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 45 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 46 H 0.11 0.05 5.65 -2.38 -0.01 0.04 16 47 H 0.08 0.46 8.14 -2.38 -0.02 0.44 16 48 H 0.41 0.92 6.32 -92.71 -0.59 0.34 16 49 H 0.42 3.55 8.93 -92.71 -0.83 2.72 16 50 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 51 H 0.08 1.92 6.59 -2.39 -0.02 1.90 16 Total: -1.00 -82.43 397.98 -1.15 -83.58 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: -1.20 Total: 17.37 kcal Atomic # 6 Polarization: 16.46 SS G_CDS: 6.88 Total: 23.34 kcal Atomic # 7 Polarization: -127.01 SS G_CDS: -8.74 Total: -135.75 kcal Atomic # 8 Polarization: -37.75 SS G_CDS: -0.11 Total: -37.86 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 2.03 Total: 49.32 kcal Total: -82.43 -1.15 -83.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092801246.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.391 kcal (2) G-P(sol) polarization free energy of solvation -82.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds