Wall clock time and date at job start Tue Mar 31 2020 21:56:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09007 * 110.88504 * 2 1
4 4 C 1.54908 * 111.00434 * 236.12172 * 2 1 3
5 5 N 1.47429 * 104.83070 * 204.91383 * 4 2 1
6 6 C 1.36931 * 125.64709 * 204.09032 * 5 4 2
7 7 H 1.08002 * 120.00098 * 180.02562 * 6 5 4
8 8 C 1.38812 * 120.00429 * 0.02562 * 6 5 4
9 9 N 1.31624 * 119.99535 * 0.02562 * 8 6 5
10 10 Si 1.86798 * 120.00484 * 179.97438 * 8 6 5
11 11 H 1.48490 * 109.47339 * 180.02562 * 10 8 6
12 12 H 1.48493 * 109.47239 * 300.00542 * 10 8 6
13 13 H 1.48504 * 109.46636 * 60.00101 * 10 8 6
14 14 C 1.47023 * 108.69980 * 24.35768 * 5 4 2
15 15 C 1.54327 * 107.26742 * 358.58082 * 14 5 4
16 16 H 1.09004 * 110.66842 * 96.52852 * 15 14 5
17 17 C 1.52999 * 110.85377 * 219.67414 * 15 14 5
18 18 C 1.52997 * 109.47224 * 288.69638 * 17 15 14
19 19 N 1.46505 * 109.47454 * 179.97438 * 18 17 15
20 20 C 1.34773 * 119.99807 * 180.02562 * 19 18 17
21 21 O 1.21274 * 120.00604 * 359.97438 * 20 19 18
22 22 C 1.50706 * 119.99709 * 180.02562 * 20 19 18
23 23 N 1.46894 * 109.47325 * 179.97438 * 22 20 19
24 24 C 1.47190 * 111.00009 * 170.00075 * 23 22 20
25 25 C 1.52979 * 108.72957 * 54.37109 * 24 23 22
26 26 N 1.45999 * 110.04510 * 50.29147 * 25 24 23
27 27 C 1.33715 * 122.93065 * 341.83747 * 26 25 24
28 28 O 1.21278 * 118.62839 * 181.68717 * 27 26 25
29 29 C 1.46906 * 111.00023 * 292.89214 * 23 22 20
30 30 H 1.09002 * 109.47058 * 182.42264 * 1 2 3
31 31 H 1.08998 * 109.47139 * 302.42808 * 1 2 3
32 32 H 1.09005 * 109.47424 * 62.42588 * 1 2 3
33 33 H 1.09000 * 110.36556 * 86.07597 * 4 2 1
34 34 H 1.08993 * 110.36493 * 323.75256 * 4 2 1
35 35 H 0.97005 * 119.99717 * 179.97438 * 9 8 6
36 36 H 1.08998 * 109.88037 * 118.13318 * 14 5 4
37 37 H 1.08998 * 109.87956 * 239.29392 * 14 5 4
38 38 H 1.09000 * 109.46950 * 48.69331 * 17 15 14
39 39 H 1.08999 * 109.47347 * 168.69304 * 17 15 14
40 40 H 1.08996 * 109.47366 * 299.99914 * 18 17 15
41 41 H 1.08999 * 109.47231 * 59.99595 * 18 17 15
42 42 H 0.96999 * 119.99614 * 359.97438 * 19 18 17
43 43 H 1.08996 * 109.47054 * 300.00379 * 22 20 19
44 44 H 1.08999 * 109.47039 * 59.99752 * 22 20 19
45 45 H 1.08999 * 109.59204 * 174.14451 * 24 23 22
46 46 H 1.08997 * 109.59201 * 294.59003 * 24 23 22
47 47 H 1.09000 * 109.37373 * 170.46672 * 25 24 23
48 48 H 1.09000 * 109.37102 * 290.22784 * 25 24 23
49 49 H 0.96996 * 118.53691 * 161.81866 * 26 25 24
50 50 H 1.09004 * 109.38454 * 47.08938 * 29 23 22
51 51 H 1.08998 * 109.38600 * 166.77333 * 29 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9186 1.0185 0.0000
4 6 2.0853 -0.8061 -1.2006
5 7 3.4272 -1.2427 -0.7738
6 6 4.4640 -1.5660 -1.6078
7 1 5.4125 -1.8763 -1.1949
8 6 4.2961 -1.4948 -2.9839
9 7 3.1403 -1.1161 -3.4870
10 14 5.7107 -1.9351 -4.1215
11 1 5.2780 -1.7778 -5.5333
12 1 6.8604 -1.0344 -3.8534
13 1 6.1185 -3.3429 -3.8822
14 6 3.4657 -1.2796 0.6955
15 6 2.0862 -0.8083 1.2019
16 1 1.4451 -1.6619 1.4223
17 6 2.2349 0.0867 2.4338
18 6 2.6650 -0.7620 3.6319
19 7 2.8080 0.0951 4.8114
20 6 3.1821 -0.4388 5.9910
21 8 3.3999 -1.6288 6.0762
22 6 3.3286 0.4428 7.2045
23 7 3.7417 -0.3720 8.3548
24 6 4.1240 0.4785 9.4936
25 6 2.9694 1.4331 9.8031
26 7 1.7195 0.6870 9.9151
27 6 1.5645 -0.5488 9.4284
28 8 0.4821 -1.0848 9.5377
29 6 2.6753 -1.3012 8.7519
30 1 -0.3633 -1.0268 0.0434
31 1 -0.3633 0.5511 0.8674
32 1 -0.3634 0.4757 -0.9110
33 1 2.1559 -0.1711 -2.0837
34 1 1.4519 -1.6698 -1.4030
35 1 3.0230 -1.0660 -4.4487
36 1 3.6601 -2.2967 1.0357
37 1 4.2423 -0.6088 1.0628
38 1 2.9888 0.8497 2.2397
39 1 1.2806 0.5661 2.6520
40 1 1.9112 -1.5249 3.8261
41 1 3.6193 -1.2413 3.4137
42 1 2.6342 1.0470 4.7432
43 1 4.0820 1.2061 7.0101
44 1 2.3742 0.9218 7.4230
45 1 4.3259 -0.1454 10.3642
46 1 5.0147 1.0526 9.2382
47 1 3.1683 1.9485 10.7428
48 1 2.8808 2.1655 9.0007
49 1 0.9681 1.1063 10.3627
50 1 2.2853 -1.8038 7.8668
51 1 3.0801 -2.0441 9.4391
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001103305058.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:56:25
Heat of formation + Delta-G solvation = -38.079551 kcal
Electronic energy + Delta-G solvation = -29604.430996 eV
Core-core repulsion = 25539.421714 eV
Total energy + Delta-G solvation = -4065.009282 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 1.09 seconds
Orbital eigenvalues (eV)
-41.29045 -39.62858 -38.19349 -37.59292 -35.33314 -34.53764 -33.26289 -31.36603
-30.67734 -30.35626 -29.27696 -26.81071 -25.74034 -25.33606 -24.07583 -23.25333
-22.01300 -21.00486 -19.85242 -19.49268 -19.17412 -17.88319 -17.65510 -16.83544
-16.73777 -16.33341 -15.98008 -15.65271 -15.47212 -15.07580 -14.95553 -14.47560
-14.33480 -13.90740 -13.76793 -13.50864 -13.42768 -13.08835 -12.95978 -12.80389
-12.29875 -12.13912 -12.06418 -11.97372 -11.85956 -11.62582 -11.47238 -11.11426
-11.00755 -10.87723 -10.83509 -10.71900 -10.14413 -10.02825 -9.86823 -9.78232
-9.69102 -9.68284 -9.30504 -9.13753 -8.83012 -8.61304 -6.78466 -5.61530
-3.02928 2.14280 2.45908 2.58582 2.85559 3.42645 3.44268 3.46705
3.48122 3.96823 4.22813 4.29889 4.40535 4.52122 4.64458 4.69334
4.83230 4.89687 4.94197 5.04700 5.10974 5.17593 5.29590 5.38599
5.47964 5.55152 5.57265 5.68677 5.78295 5.94832 5.99189 6.04316
6.15580 6.21962 6.25893 6.28237 6.32643 6.34162 6.38781 6.57822
6.64015 6.72138 6.73339 6.85670 7.04636 7.35163 7.58573 7.67085
7.69058 7.90302 8.08574 8.40597 9.26376 9.87410 10.53003 11.42097
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.021472 B = 0.001938 C = 0.001848
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1303.719474 B =14442.418652 C =15146.980623
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C -0.115 4.115
3 H 0.067 0.933
4 C 0.158 3.842
5 N -0.606 5.606
6 C -0.221 4.221
7 H 0.076 0.924
8 C -0.013 4.013
9 N -0.923 5.923
10 Si 0.914 3.086
11 H -0.290 1.290
12 H -0.285 1.285
13 H -0.286 1.286
14 C 0.140 3.860
15 C -0.093 4.093
16 H 0.072 0.928
17 C -0.116 4.116
18 C 0.119 3.881
19 N -0.729 5.729
20 C 0.509 3.491
21 O -0.520 6.520
22 C 0.026 3.974
23 N -0.506 5.506
24 C 0.036 3.964
25 C 0.070 3.930
26 N -0.727 5.727
27 C 0.485 3.515
28 O -0.547 6.547
29 C 0.036 3.964
30 H 0.050 0.950
31 H 0.042 0.958
32 H 0.053 0.947
33 H 0.105 0.895
34 H 0.011 0.989
35 H 0.252 0.748
36 H 0.019 0.981
37 H 0.022 0.978
38 H 0.069 0.931
39 H 0.065 0.935
40 H 0.067 0.933
41 H 0.073 0.927
42 H 0.398 0.602
43 H 0.112 0.888
44 H 0.067 0.933
45 H 0.092 0.908
46 H 0.104 0.896
47 H 0.085 0.915
48 H 0.070 0.930
49 H 0.399 0.601
50 H 0.129 0.871
51 H 0.117 0.883
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.642 10.428 26.891 28.889
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C -0.134 4.134
3 H 0.086 0.914
4 C 0.034 3.966
5 N -0.331 5.331
6 C -0.349 4.349
7 H 0.094 0.906
8 C -0.208 4.208
9 N -0.572 5.572
10 Si 0.745 3.255
11 H -0.216 1.216
12 H -0.212 1.212
13 H -0.212 1.212
14 C 0.014 3.986
15 C -0.112 4.112
16 H 0.091 0.909
17 C -0.154 4.154
18 C -0.004 4.004
19 N -0.381 5.381
20 C 0.294 3.706
21 O -0.396 6.396
22 C -0.105 4.105
23 N -0.229 5.229
24 C -0.093 4.093
25 C -0.056 4.056
26 N -0.381 5.381
27 C 0.271 3.729
28 O -0.423 6.423
29 C -0.094 4.094
30 H 0.069 0.931
31 H 0.061 0.939
32 H 0.072 0.928
33 H 0.122 0.878
34 H 0.029 0.971
35 H 0.062 0.938
36 H 0.037 0.963
37 H 0.040 0.960
38 H 0.088 0.912
39 H 0.083 0.917
40 H 0.085 0.915
41 H 0.091 0.909
42 H 0.232 0.768
43 H 0.130 0.870
44 H 0.085 0.915
45 H 0.111 0.889
46 H 0.122 0.878
47 H 0.104 0.896
48 H 0.088 0.912
49 H 0.235 0.765
50 H 0.147 0.853
51 H 0.135 0.865
Dipole moment (debyes) X Y Z Total
from point charges -1.375 8.830 26.495 27.961
hybrid contribution -0.300 1.001 -0.145 1.055
sum -1.675 9.831 26.350 28.174
Atomic orbital electron populations
1.21636 0.95790 1.01149 1.00522 1.22627 0.94338 0.99323 0.97136
0.91416 1.21968 0.84087 0.95868 0.94723 1.44504 1.10531 1.78922
0.99191 1.19043 0.91048 1.37587 0.87240 0.90610 1.24786 0.97279
1.02143 0.96620 1.69799 1.22424 1.53950 1.11039 0.86153 0.81232
0.78218 0.79918 1.21609 1.21212 1.21229 1.21368 0.93677 0.97211
0.86353 1.22148 0.98166 0.97614 0.93282 0.90933 1.21784 1.01408
0.98487 0.93706 1.21512 1.02298 0.93272 0.83347 1.46050 1.70127
1.12213 1.09712 1.20344 0.77102 0.88979 0.84166 1.90717 1.48581
1.15656 1.84604 1.22136 1.01947 0.95946 0.90488 1.62179 1.37971
1.17899 1.04834 1.22685 0.97139 0.95265 0.94172 1.22175 0.84821
0.95536 1.03106 1.45684 1.15696 1.16702 1.60040 1.21511 0.90974
0.81888 0.78574 1.90782 1.27124 1.66598 1.57800 1.22659 0.88161
0.95694 1.02912 0.93071 0.93903 0.92812 0.87766 0.97088 0.93760
0.96270 0.96008 0.91210 0.91669 0.91496 0.90856 0.76801 0.87030
0.91549 0.88931 0.87808 0.89645 0.91176 0.76530 0.85317 0.86526
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.04 9.29 37.16 0.35 -1.69 16
2 C -0.11 -2.09 3.09 -88.47 -0.27 -2.36 16
3 H 0.07 1.23 8.05 -51.92 -0.42 0.82 16
4 C 0.16 3.84 5.36 -2.53 -0.01 3.82 16
5 N -0.61 -15.70 3.39 -170.07 -0.58 -16.28 16
6 C -0.22 -6.24 10.27 -15.06 -0.15 -6.40 16
7 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16
8 C -0.01 -0.37 5.49 -17.43 -0.10 -0.47 16
9 N -0.92 -27.12 10.09 55.49 0.56 -26.56 16
10 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16
11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16
12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16
13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16
14 C 0.14 2.92 6.24 -3.06 -0.02 2.90 16
15 C -0.09 -1.54 2.39 -88.79 -0.21 -1.75 16
16 H 0.07 1.21 8.01 -51.93 -0.42 0.79 16
17 C -0.12 -1.44 4.73 -26.73 -0.13 -1.57 16
18 C 0.12 1.47 5.56 -4.04 -0.02 1.44 16
19 N -0.73 -7.09 5.56 -60.29 -0.33 -7.43 16
20 C 0.51 5.56 7.43 -10.98 -0.08 5.48 16
21 O -0.52 -7.88 14.52 5.56 0.08 -7.79 16
22 C 0.03 0.18 4.51 -4.98 -0.02 0.16 16
23 N -0.51 -3.77 4.75 -237.55 -1.13 -4.90 16
24 C 0.04 0.13 6.03 -3.68 -0.02 0.11 16
25 C 0.07 0.20 6.46 -4.32 -0.03 0.17 16
26 N -0.73 -4.39 5.33 -61.07 -0.33 -4.71 16
27 C 0.48 4.76 7.06 -11.67 -0.08 4.68 16
28 O -0.55 -7.87 17.82 5.56 0.10 -7.77 16
29 C 0.04 0.34 5.49 -5.19 -0.03 0.31 16
30 H 0.05 0.79 8.11 -51.93 -0.42 0.37 16
31 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16
32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16
33 H 0.10 2.85 5.87 -51.93 -0.31 2.55 16
34 H 0.01 0.29 8.03 -51.93 -0.42 -0.13 16
35 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16
36 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16
37 H 0.02 0.45 7.69 -51.93 -0.40 0.05 16
38 H 0.07 0.87 7.94 -51.93 -0.41 0.46 16
39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16
40 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16
41 H 0.07 1.05 7.68 -51.93 -0.40 0.65 16
42 H 0.40 2.65 8.47 -40.82 -0.35 2.31 16
43 H 0.11 0.48 8.08 -51.93 -0.42 0.06 16
44 H 0.07 0.40 6.23 -51.93 -0.32 0.08 16
45 H 0.09 0.33 8.08 -51.93 -0.42 -0.09 16
46 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16
47 H 0.09 0.08 8.14 -51.93 -0.42 -0.35 16
48 H 0.07 0.14 7.09 -51.93 -0.37 -0.23 16
49 H 0.40 2.13 8.84 -40.82 -0.36 1.77 16
50 H 0.13 1.55 5.88 -51.93 -0.31 1.24 16
51 H 0.12 0.96 8.14 -51.93 -0.42 0.53 16
LS Contribution 397.08 15.07 5.98 5.98
Total: -1.00 -36.40 397.08 -10.16 -46.57
By element:
Atomic # 1 Polarization: 9.43 SS G_CDS: -8.66 Total: 0.77 kcal
Atomic # 6 Polarization: 5.67 SS G_CDS: -0.84 Total: 4.83 kcal
Atomic # 7 Polarization: -58.07 SS G_CDS: -1.81 Total: -59.87 kcal
Atomic # 8 Polarization: -15.75 SS G_CDS: 0.18 Total: -15.57 kcal
Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal
Total LS contribution 5.98 Total: 5.98 kcal
Total: -36.40 -10.16 -46.57 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001103305058.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 8.487 kcal
(2) G-P(sol) polarization free energy of solvation -36.405 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.917 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.162 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.567 kcal
(6) G-S(sol) free energy of system = (1) + (5) -38.080 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.09 seconds