Wall clock time and date at job start Tue Mar 31 2020 21:56:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09007 * 110.88504 * 2 1
4 4 C 1.54908 * 111.00434 * 236.12172 * 2 1 3
5 5 N 1.47429 * 104.83070 * 204.91383 * 4 2 1
6 6 C 1.36931 * 125.64709 * 204.09032 * 5 4 2
7 7 H 1.08002 * 120.00098 * 180.02562 * 6 5 4
8 8 C 1.38812 * 120.00429 * 0.02562 * 6 5 4
9 9 N 1.31624 * 119.99535 * 0.02562 * 8 6 5
10 10 Si 1.86798 * 120.00484 * 179.97438 * 8 6 5
11 11 H 1.48490 * 109.47339 * 180.02562 * 10 8 6
12 12 H 1.48493 * 109.47239 * 300.00542 * 10 8 6
13 13 H 1.48504 * 109.46636 * 60.00101 * 10 8 6
14 14 C 1.47023 * 108.69980 * 24.35768 * 5 4 2
15 15 C 1.54327 * 107.26742 * 358.58082 * 14 5 4
16 16 H 1.09004 * 110.66842 * 96.52852 * 15 14 5
17 17 C 1.52999 * 110.85377 * 219.67414 * 15 14 5
18 18 C 1.52997 * 109.47224 * 288.69638 * 17 15 14
19 19 N 1.46505 * 109.47454 * 179.97438 * 18 17 15
20 20 C 1.34773 * 119.99807 * 180.02562 * 19 18 17
21 21 O 1.21274 * 120.00604 * 359.97438 * 20 19 18
22 22 C 1.50706 * 119.99709 * 180.02562 * 20 19 18
23 23 N 1.46894 * 109.47325 * 179.97438 * 22 20 19
24 24 C 1.47190 * 111.00009 * 170.00075 * 23 22 20
25 25 C 1.52979 * 108.72957 * 54.37109 * 24 23 22
26 26 N 1.45999 * 110.04510 * 50.29147 * 25 24 23
27 27 C 1.33715 * 122.93065 * 341.83747 * 26 25 24
28 28 O 1.21278 * 118.62839 * 181.68717 * 27 26 25
29 29 C 1.46906 * 111.00023 * 292.89214 * 23 22 20
30 30 H 1.09002 * 109.47058 * 182.42264 * 1 2 3
31 31 H 1.08998 * 109.47139 * 302.42808 * 1 2 3
32 32 H 1.09005 * 109.47424 * 62.42588 * 1 2 3
33 33 H 1.09000 * 110.36556 * 86.07597 * 4 2 1
34 34 H 1.08993 * 110.36493 * 323.75256 * 4 2 1
35 35 H 0.97005 * 119.99717 * 179.97438 * 9 8 6
36 36 H 1.08998 * 109.88037 * 118.13318 * 14 5 4
37 37 H 1.08998 * 109.87956 * 239.29392 * 14 5 4
38 38 H 1.09000 * 109.46950 * 48.69331 * 17 15 14
39 39 H 1.08999 * 109.47347 * 168.69304 * 17 15 14
40 40 H 1.08996 * 109.47366 * 299.99914 * 18 17 15
41 41 H 1.08999 * 109.47231 * 59.99595 * 18 17 15
42 42 H 0.96999 * 119.99614 * 359.97438 * 19 18 17
43 43 H 1.08996 * 109.47054 * 300.00379 * 22 20 19
44 44 H 1.08999 * 109.47039 * 59.99752 * 22 20 19
45 45 H 1.08999 * 109.59204 * 174.14451 * 24 23 22
46 46 H 1.08997 * 109.59201 * 294.59003 * 24 23 22
47 47 H 1.09000 * 109.37373 * 170.46672 * 25 24 23
48 48 H 1.09000 * 109.37102 * 290.22784 * 25 24 23
49 49 H 0.96996 * 118.53691 * 161.81866 * 26 25 24
50 50 H 1.09004 * 109.38454 * 47.08938 * 29 23 22
51 51 H 1.08998 * 109.38600 * 166.77333 * 29 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9186 1.0185 0.0000
4 6 2.0853 -0.8061 -1.2006
5 7 3.4272 -1.2427 -0.7738
6 6 4.4640 -1.5660 -1.6078
7 1 5.4125 -1.8763 -1.1949
8 6 4.2961 -1.4948 -2.9839
9 7 3.1403 -1.1161 -3.4870
10 14 5.7107 -1.9351 -4.1215
11 1 5.2780 -1.7778 -5.5333
12 1 6.8604 -1.0344 -3.8534
13 1 6.1185 -3.3429 -3.8822
14 6 3.4657 -1.2796 0.6955
15 6 2.0862 -0.8083 1.2019
16 1 1.4451 -1.6619 1.4223
17 6 2.2349 0.0867 2.4338
18 6 2.6650 -0.7620 3.6319
19 7 2.8080 0.0951 4.8114
20 6 3.1821 -0.4388 5.9910
21 8 3.3999 -1.6288 6.0762
22 6 3.3286 0.4428 7.2045
23 7 3.7417 -0.3720 8.3548
24 6 4.1240 0.4785 9.4936
25 6 2.9694 1.4331 9.8031
26 7 1.7195 0.6870 9.9151
27 6 1.5645 -0.5488 9.4284
28 8 0.4821 -1.0848 9.5377
29 6 2.6753 -1.3012 8.7519
30 1 -0.3633 -1.0268 0.0434
31 1 -0.3633 0.5511 0.8674
32 1 -0.3634 0.4757 -0.9110
33 1 2.1559 -0.1711 -2.0837
34 1 1.4519 -1.6698 -1.4030
35 1 3.0230 -1.0660 -4.4487
36 1 3.6601 -2.2967 1.0357
37 1 4.2423 -0.6088 1.0628
38 1 2.9888 0.8497 2.2397
39 1 1.2806 0.5661 2.6520
40 1 1.9112 -1.5249 3.8261
41 1 3.6193 -1.2413 3.4137
42 1 2.6342 1.0470 4.7432
43 1 4.0820 1.2061 7.0101
44 1 2.3742 0.9218 7.4230
45 1 4.3259 -0.1454 10.3642
46 1 5.0147 1.0526 9.2382
47 1 3.1683 1.9485 10.7428
48 1 2.8808 2.1655 9.0007
49 1 0.9681 1.1063 10.3627
50 1 2.2853 -1.8038 7.8668
51 1 3.0801 -2.0441 9.4391
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001103305058.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:56:23
Heat of formation + Delta-G solvation = -68.206296 kcal
Electronic energy + Delta-G solvation = -29605.737390 eV
Core-core repulsion = 25539.421714 eV
Total energy + Delta-G solvation = -4066.315676 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 1.18 seconds
Orbital eigenvalues (eV)
-41.91764 -40.51669 -39.70031 -38.31872 -36.44660 -35.14199 -34.98254 -32.59934
-32.51849 -30.85732 -30.08061 -28.28882 -27.35104 -26.11896 -25.38469 -23.93374
-23.35345 -21.83499 -21.38870 -20.70433 -20.10835 -18.86649 -18.47689 -18.32242
-17.41415 -17.18315 -16.96009 -16.77892 -16.37279 -16.09017 -15.81772 -15.73063
-15.49122 -15.15163 -14.92976 -14.59387 -14.38494 -14.13201 -14.03301 -13.68898
-13.55995 -13.45795 -13.34932 -12.85962 -12.79584 -12.75243 -12.72636 -12.65271
-12.40385 -12.30894 -12.16695 -11.97337 -11.77382 -11.64765 -11.42445 -11.26054
-11.08694 -10.78395 -10.70670 -10.19118 -10.05255 -9.37259 -8.87196 -7.76760
-5.21485 1.41481 1.44990 1.48556 1.54978 1.66228 2.00735 2.20478
2.49524 2.86547 3.31446 3.49529 3.70357 3.72668 3.76430 3.87618
3.92791 4.01702 4.08141 4.20770 4.24731 4.30005 4.37654 4.40425
4.52235 4.53450 4.64013 4.70593 4.75227 4.77489 4.79990 4.84549
4.98898 5.01690 5.05569 5.12630 5.20704 5.29332 5.40472 5.45872
5.48317 5.54091 5.55608 5.76137 5.76931 5.86025 5.86264 6.15946
6.32877 6.62176 7.04802 7.11968 7.32039 7.80108 8.44225 9.24307
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.021472 B = 0.001938 C = 0.001848
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1303.719474 B =14442.418652 C =15146.980623
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 C -0.100 4.100
3 H 0.074 0.926
4 C 0.159 3.841
5 N -0.630 5.630
6 C -0.241 4.241
7 H 0.077 0.923
8 C -0.069 4.069
9 N -0.948 5.948
10 Si 0.981 3.019
11 H -0.292 1.292
12 H -0.275 1.275
13 H -0.281 1.281
14 C 0.135 3.865
15 C -0.080 4.080
16 H 0.073 0.927
17 C -0.099 4.099
18 C 0.126 3.874
19 N -0.716 5.716
20 C 0.501 3.499
21 O -0.571 6.571
22 C 0.034 3.966
23 N -0.520 5.520
24 C 0.034 3.966
25 C 0.067 3.933
26 N -0.713 5.713
27 C 0.486 3.514
28 O -0.605 6.605
29 C 0.043 3.957
30 H 0.045 0.955
31 H 0.080 0.920
32 H 0.051 0.949
33 H 0.070 0.930
34 H -0.020 1.020
35 H 0.247 0.753
36 H 0.008 0.992
37 H 0.028 0.972
38 H 0.077 0.923
39 H 0.096 0.904
40 H 0.055 0.945
41 H 0.048 0.952
42 H 0.417 0.583
43 H 0.148 0.852
44 H 0.080 0.920
45 H 0.093 0.907
46 H 0.131 0.869
47 H 0.115 0.885
48 H 0.091 0.909
49 H 0.404 0.596
50 H 0.096 0.904
51 H 0.119 0.881
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.951 13.437 29.114 32.080
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.185 4.185
2 C -0.119 4.119
3 H 0.092 0.908
4 C 0.034 3.966
5 N -0.356 5.356
6 C -0.370 4.370
7 H 0.095 0.905
8 C -0.261 4.261
9 N -0.598 5.598
10 Si 0.809 3.191
11 H -0.218 1.218
12 H -0.200 1.200
13 H -0.207 1.207
14 C 0.010 3.990
15 C -0.099 4.099
16 H 0.091 0.909
17 C -0.137 4.137
18 C 0.002 3.998
19 N -0.370 5.370
20 C 0.288 3.712
21 O -0.449 6.449
22 C -0.096 4.096
23 N -0.244 5.244
24 C -0.093 4.093
25 C -0.058 4.058
26 N -0.365 5.365
27 C 0.272 3.728
28 O -0.486 6.486
29 C -0.088 4.088
30 H 0.064 0.936
31 H 0.099 0.901
32 H 0.070 0.930
33 H 0.088 0.912
34 H -0.002 1.002
35 H 0.057 0.943
36 H 0.026 0.974
37 H 0.046 0.954
38 H 0.096 0.904
39 H 0.114 0.886
40 H 0.073 0.927
41 H 0.067 0.933
42 H 0.254 0.746
43 H 0.166 0.834
44 H 0.098 0.902
45 H 0.112 0.888
46 H 0.149 0.851
47 H 0.133 0.867
48 H 0.109 0.891
49 H 0.240 0.760
50 H 0.114 0.886
51 H 0.136 0.864
Dipole moment (debyes) X Y Z Total
from point charges -0.654 11.931 28.764 31.147
hybrid contribution -0.442 0.065 -0.807 0.922
sum -1.096 11.996 27.957 30.441
Atomic orbital electron populations
1.21599 0.93117 1.01546 1.02207 1.22466 0.96403 0.98512 0.94553
0.90756 1.21794 0.83572 0.94786 0.96456 1.44865 1.10544 1.78938
1.01237 1.19416 0.91932 1.37507 0.88178 0.90544 1.25652 0.99856
1.02531 0.98084 1.70070 1.24145 1.54804 1.10791 0.85120 0.78452
0.78084 0.77493 1.21751 1.20050 1.20733 1.21565 0.96697 0.96905
0.83876 1.22055 0.95177 0.98193 0.94490 0.90897 1.21619 1.03337
0.97460 0.91237 1.21214 1.00620 0.93475 0.84504 1.45876 1.69539
1.12904 1.08679 1.21186 0.75851 0.88885 0.85321 1.90704 1.50734
1.18064 1.85417 1.22184 1.03823 0.95327 0.88291 1.62177 1.36914
1.18967 1.06330 1.22867 0.98375 0.95214 0.92871 1.22471 0.82626
0.95115 1.05542 1.45684 1.17191 1.15430 1.58184 1.21580 0.90066
0.82826 0.78377 1.90751 1.29136 1.68309 1.60366 1.22423 0.88623
0.96324 1.01465 0.93566 0.90094 0.93031 0.91244 1.00213 0.94348
0.97391 0.95354 0.90416 0.88573 0.92698 0.93349 0.74568 0.83406
0.90211 0.88844 0.85140 0.86673 0.89102 0.75956 0.88610 0.86358
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.62 9.29 71.98 0.67 -2.95 16
2 C -0.10 -3.54 3.09 -9.40 -0.03 -3.57 16
3 H 0.07 2.56 8.05 -2.38 -0.02 2.54 16
4 C 0.16 7.96 5.36 86.85 0.47 8.43 16
5 N -0.63 -33.62 3.39 -691.99 -2.35 -35.96 16
6 C -0.24 -14.02 10.27 84.03 0.86 -13.15 16
7 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16
8 C -0.07 -4.01 5.49 84.86 0.47 -3.54 16
9 N -0.95 -57.67 10.09 21.65 0.22 -57.45 16
10 Si 0.98 46.67 29.55 68.60 2.03 48.70 16
11 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16
12 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16
13 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16
14 C 0.13 5.69 6.24 86.73 0.54 6.23 16
15 C -0.08 -2.57 2.39 -9.61 -0.02 -2.59 16
16 H 0.07 2.36 8.01 -2.39 -0.02 2.34 16
17 C -0.10 -2.18 4.73 30.59 0.14 -2.03 16
18 C 0.13 2.96 5.56 86.38 0.48 3.44 16
19 N -0.72 -12.34 5.56 -463.07 -2.57 -14.91 16
20 C 0.50 10.27 7.43 87.66 0.65 10.92 16
21 O -0.57 -17.59 14.52 -3.01 -0.04 -17.64 16
22 C 0.03 0.37 4.51 85.56 0.39 0.75 16
23 N -0.52 -6.69 4.75 -905.47 -4.30 -10.99 16
24 C 0.03 0.13 6.03 86.24 0.52 0.65 16
25 C 0.07 0.09 6.46 86.47 0.56 0.64 16
26 N -0.71 -6.88 5.33 -466.12 -2.48 -9.36 16
27 C 0.49 9.30 7.06 87.68 0.62 9.92 16
28 O -0.60 -17.96 17.82 -3.02 -0.05 -18.01 16
29 C 0.04 0.80 5.49 85.42 0.47 1.27 16
30 H 0.05 1.36 8.11 -2.39 -0.02 1.34 16
31 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16
32 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16
33 H 0.07 3.97 5.87 -2.39 -0.01 3.96 16
34 H -0.02 -1.10 8.03 -2.39 -0.02 -1.12 16
35 H 0.25 14.55 8.31 -92.70 -0.77 13.78 16
36 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16
37 H 0.03 1.16 7.69 -2.39 -0.02 1.14 16
38 H 0.08 1.66 7.94 -2.39 -0.02 1.64 16
39 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16
40 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16
41 H 0.05 1.39 7.68 -2.39 -0.02 1.37 16
42 H 0.42 3.97 8.47 -92.71 -0.79 3.19 16
43 H 0.15 0.52 8.08 -2.39 -0.02 0.50 16
44 H 0.08 0.67 6.23 -2.39 -0.01 0.66 16
45 H 0.09 0.38 8.08 -2.39 -0.02 0.36 16
46 H 0.13 -0.12 8.14 -2.39 -0.02 -0.14 16
47 H 0.12 -0.40 8.14 -2.39 -0.02 -0.42 16
48 H 0.09 -0.15 7.09 -2.39 -0.02 -0.17 16
49 H 0.40 3.39 8.84 -92.71 -0.82 2.57 16
50 H 0.10 2.46 5.88 -2.38 -0.01 2.45 16
51 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16
Total: -1.00 -86.22 397.08 -3.44 -89.66
By element:
Atomic # 1 Polarization: 12.22 SS G_CDS: -0.66 Total: 11.55 kcal
Atomic # 6 Polarization: 7.63 SS G_CDS: 6.78 Total: 14.41 kcal
Atomic # 7 Polarization: -117.19 SS G_CDS: -11.49 Total: -128.68 kcal
Atomic # 8 Polarization: -35.55 SS G_CDS: -0.10 Total: -35.65 kcal
Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal
Total: -86.22 -3.44 -89.66 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001103305058.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 21.452 kcal
(2) G-P(sol) polarization free energy of solvation -86.216 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.764 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.442 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.658 kcal
(6) G-S(sol) free energy of system = (1) + (5) -68.206 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.18 seconds