Wall clock time and date at job start Tue Mar 31 2020 21:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 110.63649 * 2 1 4 4 C 1.54324 * 110.71997 * 236.85762 * 2 1 3 5 5 N 1.47016 * 107.26777 * 219.44116 * 4 2 1 6 6 C 1.34781 * 125.65030 * 178.90571 * 5 4 2 7 7 O 1.21277 * 120.00307 * 180.02562 * 6 5 4 8 8 C 1.50701 * 119.99433 * 0.02562 * 6 5 4 9 9 N 1.46899 * 109.46926 * 180.02562 * 8 6 5 10 10 C 1.47195 * 110.99909 * 170.00354 * 9 8 6 11 11 C 1.52980 * 108.73162 * 54.36736 * 10 9 8 12 12 N 1.46007 * 110.04069 * 50.29274 * 11 10 9 13 13 C 1.33715 * 122.93029 * 341.83631 * 12 11 10 14 14 O 1.21280 * 118.62617 * 181.68283 * 13 12 11 15 15 C 1.46904 * 111.00098 * 292.88903 * 9 8 6 16 16 C 1.47425 * 108.70884 * 358.94080 * 5 4 2 17 17 C 1.55123 * 104.93656 * 24.00285 * 16 5 4 18 18 H 1.08996 * 110.93846 * 81.22057 * 17 16 5 19 19 C 1.53009 * 111.16155 * 205.13078 * 17 16 5 20 20 C 1.52997 * 109.46914 * 287.17142 * 19 17 16 21 21 N 1.46502 * 109.46750 * 179.97438 * 20 19 17 22 22 C 1.36934 * 119.99902 * 179.97438 * 21 20 19 23 23 H 1.08001 * 120.00294 * 0.02562 * 22 21 20 24 24 C 1.38814 * 120.00251 * 180.02562 * 22 21 20 25 25 N 1.31615 * 119.99768 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00217 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.47445 * 59.99978 * 26 24 22 28 28 H 1.48497 * 109.47305 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.47251 * 299.99953 * 26 24 22 30 30 H 1.09001 * 109.47002 * 179.29855 * 1 2 3 31 31 H 1.08993 * 109.46955 * 299.30293 * 1 2 3 32 32 H 1.09000 * 109.47050 * 59.30121 * 1 2 3 33 33 H 1.08998 * 109.88316 * 338.85970 * 4 2 1 34 34 H 1.09004 * 109.88155 * 99.87414 * 4 2 1 35 35 H 1.09001 * 109.47528 * 299.99920 * 8 6 5 36 36 H 1.09005 * 109.47533 * 60.00178 * 8 6 5 37 37 H 1.09007 * 109.58941 * 174.14549 * 10 9 8 38 38 H 1.08999 * 109.59331 * 294.43589 * 10 9 8 39 39 H 1.09001 * 109.37408 * 170.46470 * 11 10 9 40 40 H 1.08994 * 109.37393 * 290.23174 * 11 10 9 41 41 H 0.97000 * 118.53684 * 161.86028 * 12 11 10 42 42 H 1.09005 * 109.38425 * 47.09114 * 15 9 8 43 43 H 1.09002 * 109.38747 * 166.77356 * 15 9 8 44 44 H 1.08992 * 110.36838 * 142.96525 * 16 5 4 45 45 H 1.08995 * 110.37033 * 265.18577 * 16 5 4 46 46 H 1.08999 * 109.46767 * 47.17265 * 19 17 16 47 47 H 1.08998 * 109.46898 * 167.16862 * 19 17 16 48 48 H 1.08999 * 109.47504 * 299.99671 * 20 19 17 49 49 H 1.08999 * 109.47086 * 59.99926 * 20 19 17 50 50 H 0.96998 * 120.00341 * 0.02562 * 21 20 19 51 51 H 0.96996 * 120.00080 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0761 -0.7892 -1.2086 5 7 3.2445 -1.5494 -0.7416 6 6 3.9916 -2.3820 -1.4933 7 8 4.9372 -2.9600 -1.0007 8 6 3.6519 -2.5948 -2.9460 9 7 4.6078 -3.5395 -3.5391 10 6 4.1737 -3.9554 -4.8827 11 6 3.9414 -2.7051 -5.7330 12 7 5.0995 -1.8200 -5.6480 13 6 6.0138 -1.9104 -4.6764 14 8 6.9289 -1.1146 -4.6638 15 6 5.9550 -2.9569 -3.5999 16 6 3.4634 -1.2508 0.6854 17 6 2.0790 -0.7933 1.2151 18 1 1.4453 -1.6510 1.4403 19 6 2.2278 0.1123 2.4394 20 6 2.6508 -0.7274 3.6464 21 7 2.7938 0.1398 4.8185 22 6 3.1670 -0.3934 6.0233 23 1 3.3563 -1.4532 6.1094 24 6 3.3020 0.4281 7.1340 25 7 3.0708 1.7196 7.0293 26 14 3.8118 -0.2992 8.7773 27 1 5.1437 -0.9418 8.6425 28 1 3.8829 0.7795 9.7954 29 1 2.8133 -1.3137 9.2007 30 1 -0.3633 -1.0276 -0.0126 31 1 -0.3633 0.5029 0.8961 32 1 -0.3633 0.5247 -0.8837 33 1 1.3130 -1.4732 -1.5800 34 1 2.3716 -0.0991 -1.9990 35 1 2.6432 -2.9998 -3.0278 36 1 3.7053 -1.6432 -3.4749 37 1 4.9467 -4.5716 -5.3421 38 1 3.2482 -4.5262 -4.8074 39 1 3.7854 -2.9977 -6.7713 40 1 3.0589 -2.1791 -5.3690 41 1 5.2105 -1.1356 -6.3264 42 1 6.1959 -2.5016 -2.6392 43 1 6.6792 -3.7418 -3.8182 44 1 3.7961 -2.1445 1.2133 45 1 4.1946 -0.4504 0.7978 46 1 2.9853 0.8703 2.2406 47 1 1.2748 0.5975 2.6503 48 1 1.8932 -1.4855 3.8452 49 1 3.6038 -1.2126 3.4354 50 1 2.6234 1.0916 4.7413 51 1 3.1648 2.2936 7.8054 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104486710.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:12 Heat of formation + Delta-G solvation = -76.825308 kcal Electronic energy + Delta-G solvation = -29901.897649 eV Core-core repulsion = 25835.208225 eV Total energy + Delta-G solvation = -4066.689424 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.00019 -40.98194 -39.28167 -38.19034 -36.87971 -35.17268 -34.67363 -33.45391 -31.88543 -30.88213 -30.34253 -28.30904 -27.24576 -26.25638 -25.52392 -24.09243 -23.64872 -22.10327 -21.11713 -20.94324 -19.75882 -19.17853 -18.47696 -18.36618 -17.57033 -17.15305 -17.03322 -16.68228 -16.25456 -16.04791 -15.89207 -15.61928 -15.39468 -15.25355 -15.03280 -14.79289 -14.57700 -14.28192 -14.15214 -13.75285 -13.58629 -13.53075 -13.28135 -13.10044 -12.85562 -12.78394 -12.71766 -12.60855 -12.46201 -12.32428 -12.28149 -12.15638 -11.91311 -11.68240 -11.60908 -11.57824 -11.20562 -10.93101 -10.88162 -10.20924 -9.68122 -9.40954 -9.02359 -7.97375 -5.26472 1.38826 1.45382 1.48962 1.55063 1.57314 1.81190 2.13180 2.54478 2.78782 3.32290 3.35907 3.47278 3.52840 3.67190 3.73778 3.84367 3.98861 4.10210 4.15074 4.19120 4.24964 4.30789 4.36471 4.44811 4.49818 4.51531 4.61457 4.64431 4.68254 4.72222 4.74913 4.78893 4.89918 4.92292 4.97598 5.05307 5.15715 5.20502 5.29429 5.34709 5.43846 5.47545 5.51009 5.54662 5.73518 5.83898 6.13539 6.25521 6.52049 7.02603 7.13325 7.31337 8.07554 8.31056 9.25964 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.017631 B = 0.002090 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.772481 B =13393.886554 C =14157.815106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.094 4.094 3 H 0.085 0.915 4 C 0.103 3.897 5 N -0.619 5.619 6 C 0.514 3.486 7 O -0.572 6.572 8 C 0.043 3.957 9 N -0.520 5.520 10 C 0.034 3.966 11 C 0.067 3.933 12 N -0.712 5.712 13 C 0.485 3.515 14 O -0.605 6.605 15 C 0.042 3.958 16 C 0.110 3.890 17 C -0.079 4.079 18 H 0.091 0.909 19 C -0.099 4.099 20 C 0.150 3.850 21 N -0.748 5.748 22 C -0.250 4.250 23 H 0.072 0.928 24 C -0.076 4.076 25 N -0.969 5.969 26 Si 0.975 3.025 27 H -0.280 1.280 28 H -0.292 1.292 29 H -0.275 1.275 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.148 0.852 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.133 0.867 39 H 0.118 0.882 40 H 0.091 0.909 41 H 0.405 0.595 42 H 0.091 0.909 43 H 0.121 0.879 44 H 0.055 0.945 45 H 0.053 0.947 46 H 0.057 0.943 47 H 0.074 0.926 48 H 0.020 0.980 49 H 0.010 0.990 50 H 0.375 0.625 51 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.636 -9.915 -34.259 36.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.113 4.113 3 H 0.103 0.897 4 C -0.019 4.019 5 N -0.353 5.353 6 C 0.304 3.696 7 O -0.451 6.451 8 C -0.087 4.087 9 N -0.244 5.244 10 C -0.093 4.093 11 C -0.057 4.057 12 N -0.364 5.364 13 C 0.271 3.729 14 O -0.486 6.486 15 C -0.089 4.089 16 C -0.013 4.013 17 C -0.098 4.098 18 H 0.109 0.891 19 C -0.137 4.137 20 C 0.024 3.976 21 N -0.391 5.391 22 C -0.382 4.382 23 H 0.090 0.910 24 C -0.268 4.268 25 N -0.619 5.619 26 Si 0.803 3.197 27 H -0.206 1.206 28 H -0.218 1.218 29 H -0.201 1.201 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.097 0.903 33 H 0.119 0.881 34 H 0.103 0.897 35 H 0.166 0.834 36 H 0.095 0.905 37 H 0.113 0.887 38 H 0.151 0.849 39 H 0.136 0.864 40 H 0.109 0.891 41 H 0.241 0.759 42 H 0.110 0.890 43 H 0.138 0.862 44 H 0.074 0.926 45 H 0.072 0.928 46 H 0.076 0.924 47 H 0.093 0.907 48 H 0.038 0.962 49 H 0.028 0.972 50 H 0.206 0.794 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -7.613 -10.631 -33.488 35.950 hybrid contribution 0.845 1.292 0.773 1.726 sum -6.768 -9.339 -32.715 34.688 Atomic orbital electron populations 1.21735 0.91961 1.02890 1.02859 1.22262 0.97722 0.99147 0.92194 0.89684 1.22409 0.86959 0.95238 0.97274 1.48619 1.31242 1.44528 1.10924 1.20944 0.81605 0.77574 0.89502 1.90702 1.30398 1.49384 1.74621 1.22125 0.99639 0.97445 0.89536 1.62184 1.00385 1.38758 1.23036 1.22886 1.05143 0.96451 0.84825 1.22481 0.87331 0.91552 1.04385 1.45678 1.25539 1.37086 1.28137 1.21554 0.81503 0.85801 0.84014 1.90755 1.36561 1.44201 1.77093 1.22410 0.93799 0.95772 0.96895 1.22247 0.98001 0.99766 0.81319 1.22304 0.94757 0.98680 0.94102 0.89058 1.21510 1.01809 0.97630 0.92776 1.20843 0.96898 0.93247 0.86643 1.42591 1.82914 1.07424 1.06134 1.19597 1.37275 0.93249 0.88063 0.91006 1.25599 1.03443 0.96029 1.01765 1.69800 1.57443 1.04197 1.30472 0.85195 0.78299 0.76959 0.79228 1.20642 1.21803 1.20141 0.91571 0.92798 0.90288 0.88091 0.89680 0.83411 0.90460 0.88708 0.84918 0.86441 0.89123 0.75905 0.89048 0.86166 0.92614 0.92850 0.92395 0.90747 0.96177 0.97182 0.79354 0.93880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.14 71.98 0.66 -0.93 16 2 C -0.09 -1.45 3.01 -9.60 -0.03 -1.48 16 3 H 0.08 1.39 8.04 -2.39 -0.02 1.37 16 4 C 0.10 1.26 6.09 86.73 0.53 1.79 16 5 N -0.62 -13.13 3.33 -811.39 -2.70 -15.83 16 6 C 0.51 12.02 7.45 87.66 0.65 12.68 16 7 O -0.57 -19.19 14.78 -3.02 -0.04 -19.23 16 8 C 0.04 0.53 3.70 85.56 0.32 0.85 16 9 N -0.52 -7.17 4.75 -905.44 -4.30 -11.47 16 10 C 0.03 0.14 6.03 86.24 0.52 0.65 16 11 C 0.07 0.10 6.46 86.47 0.56 0.66 16 12 N -0.71 -7.33 5.33 -466.11 -2.48 -9.82 16 13 C 0.49 9.87 7.06 87.68 0.62 10.49 16 14 O -0.61 -18.84 17.82 -3.03 -0.05 -18.89 16 15 C 0.04 0.85 5.49 85.42 0.47 1.32 16 16 C 0.11 2.96 5.88 86.93 0.51 3.47 16 17 C -0.08 -1.80 2.46 -9.33 -0.02 -1.82 16 18 H 0.09 2.04 8.05 -2.39 -0.02 2.02 16 19 C -0.10 -3.02 4.84 30.60 0.15 -2.87 16 20 C 0.15 6.16 6.16 86.38 0.53 6.69 16 21 N -0.75 -39.52 5.60 -343.45 -1.92 -41.45 16 22 C -0.25 -14.56 9.99 84.03 0.84 -13.72 16 23 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 24 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 25 N -0.97 -60.51 13.06 21.65 0.28 -60.22 16 26 Si 0.97 47.42 29.55 68.60 2.03 49.45 16 27 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 28 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 29 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 30 H 0.07 0.68 8.12 -2.39 -0.02 0.66 16 31 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.10 0.66 7.80 -2.39 -0.02 0.65 16 34 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.15 0.71 8.08 -2.39 -0.02 0.69 16 36 H 0.08 0.82 6.23 -2.38 -0.01 0.80 16 37 H 0.09 0.38 8.08 -2.38 -0.02 0.37 16 38 H 0.13 -0.16 8.14 -2.39 -0.02 -0.18 16 39 H 0.12 -0.43 8.14 -2.39 -0.02 -0.45 16 40 H 0.09 -0.14 7.09 -2.39 -0.02 -0.16 16 41 H 0.40 3.63 8.84 -92.71 -0.82 2.81 16 42 H 0.09 2.55 5.88 -2.38 -0.01 2.54 16 43 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.06 1.78 8.04 -2.39 -0.02 1.76 16 45 H 0.05 1.60 7.91 -2.39 -0.02 1.58 16 46 H 0.06 1.85 7.97 -2.39 -0.02 1.83 16 47 H 0.07 2.20 8.14 -2.39 -0.02 2.19 16 48 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 49 H 0.01 0.44 7.76 -2.39 -0.02 0.42 16 50 H 0.37 20.72 7.67 -92.71 -0.71 20.01 16 51 H 0.25 15.24 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -86.38 401.62 -3.03 -89.40 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: -0.60 Total: 24.34 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: 6.77 Total: 13.72 kcal Atomic # 7 Polarization: -127.65 SS G_CDS: -11.13 Total: -138.78 kcal Atomic # 8 Polarization: -38.03 SS G_CDS: -0.10 Total: -38.13 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.03 Total: 49.45 kcal Total: -86.38 -3.03 -89.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104486710.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.578 kcal (2) G-P(sol) polarization free energy of solvation -86.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds