Wall clock time and date at job start Tue Mar 31 2020 21:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.65955 * 2 1 4 4 C 1.54595 * 110.98897 * 236.83891 * 2 1 3 5 5 N 1.48124 * 103.42246 * 204.37356 * 4 2 1 6 6 C 1.34779 * 127.03278 * 219.28705 * 5 4 2 7 7 O 1.21284 * 119.99645 * 184.66495 * 6 5 4 8 8 C 1.50693 * 119.99972 * 4.66314 * 6 5 4 9 9 C 1.53045 * 109.45902 * 214.93135 * 8 6 5 10 10 C 1.53190 * 109.31260 * 178.61507 * 9 8 6 11 11 N 1.46928 * 108.77840 * 54.63257 * 10 9 8 12 12 C 1.34776 * 120.62843 * 126.36920 * 11 10 9 13 13 N 1.34778 * 119.99536 * 174.69981 * 12 11 10 14 14 O 1.21581 * 120.00235 * 354.69871 * 12 11 10 15 15 C 1.46927 * 118.73663 * 306.39333 * 11 10 9 16 16 C 1.53032 * 109.46316 * 94.86118 * 8 6 5 17 17 C 1.47488 * 105.93062 * 39.02341 * 5 4 2 18 18 C 1.54004 * 107.08553 * 334.77962 * 17 5 4 19 19 H 1.09000 * 110.32428 * 120.19377 * 18 17 5 20 20 C 1.52998 * 110.32767 * 242.30935 * 18 17 5 21 21 N 1.46494 * 109.47391 * 293.55062 * 20 18 17 22 22 C 1.36938 * 120.00582 * 179.97438 * 21 20 18 23 23 H 1.08004 * 119.99315 * 359.97438 * 22 21 20 24 24 C 1.38806 * 120.00561 * 179.97438 * 22 21 20 25 25 N 1.31625 * 119.99722 * 0.02562 * 24 22 21 26 26 Si 1.86793 * 120.00322 * 179.97438 * 24 22 21 27 27 H 1.48510 * 109.46968 * 0.02562 * 26 24 22 28 28 H 1.48502 * 109.47127 * 119.99751 * 26 24 22 29 29 H 1.48501 * 109.47588 * 240.00325 * 26 24 22 30 30 H 1.08999 * 109.47177 * 296.81280 * 1 2 3 31 31 H 1.08997 * 109.47488 * 56.81545 * 1 2 3 32 32 H 1.09005 * 109.46993 * 176.81548 * 1 2 3 33 33 H 1.09000 * 110.62013 * 85.86151 * 4 2 1 34 34 H 1.08994 * 110.54815 * 322.85217 * 4 2 1 35 35 H 1.09005 * 109.44926 * 334.89276 * 8 6 5 36 36 H 1.08999 * 109.49638 * 58.66546 * 9 8 6 37 37 H 1.08996 * 109.49634 * 298.56382 * 9 8 6 38 38 H 1.09000 * 109.58874 * 174.42543 * 10 9 8 39 39 H 1.08999 * 109.58743 * 294.70275 * 10 9 8 40 40 H 0.96992 * 120.00164 * 354.84752 * 13 12 11 41 41 H 0.97004 * 119.99269 * 174.84696 * 13 12 11 42 42 H 1.09001 * 109.58365 * 173.39649 * 15 11 10 43 43 H 1.08995 * 109.58619 * 293.81904 * 15 11 10 44 44 H 1.09003 * 109.49690 * 61.43630 * 16 8 6 45 45 H 1.09000 * 109.52581 * 301.35472 * 16 8 6 46 46 H 1.08997 * 109.90982 * 94.13841 * 17 5 4 47 47 H 1.09000 * 109.91307 * 215.41936 * 17 5 4 48 48 H 1.09009 * 109.46735 * 53.54762 * 20 18 17 49 49 H 1.08994 * 109.47447 * 173.54458 * 20 18 17 50 50 H 0.97002 * 120.00149 * 359.97438 * 21 20 18 51 51 H 0.97006 * 119.99562 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9146 1.0199 0.0000 4 6 2.0837 -0.7895 -1.2083 5 7 3.4322 -1.2057 -0.7583 6 6 4.5594 -1.2406 -1.4963 7 8 5.5825 -1.6849 -1.0201 8 6 4.5484 -0.7277 -2.9132 9 6 5.4911 -1.5761 -3.7699 10 6 5.4511 -1.0737 -5.2165 11 7 5.7558 0.3636 -5.2267 12 6 6.7396 0.8515 -6.0080 13 7 6.9385 2.1821 -6.0890 14 8 7.4478 0.0914 -6.6396 15 6 4.9678 1.2588 -4.3685 16 6 5.0132 0.7302 -2.9313 17 6 3.2903 -1.5680 0.6644 18 6 2.0775 -0.7915 1.2102 19 1 1.3221 -1.4829 1.5835 20 6 2.5153 0.1661 2.3203 21 7 2.9826 -0.6054 3.4746 22 6 3.4276 0.0420 4.5962 23 1 3.4346 1.1215 4.6295 24 6 3.8699 -0.6890 5.6902 25 7 3.8619 -2.0046 5.6493 26 14 4.4777 0.1941 7.2198 27 1 4.3861 1.6619 7.0132 28 1 3.6391 -0.1948 8.3820 29 1 5.8903 -0.1823 7.4804 30 1 -0.3633 0.4635 0.9172 31 1 -0.3634 0.5625 -0.8600 32 1 -0.3633 -1.0261 -0.0571 33 1 2.1525 -0.1482 -2.0870 34 1 1.4612 -1.6602 -1.4141 35 1 3.5369 -0.7914 -3.3145 36 1 5.1731 -2.6181 -3.7378 37 1 6.5071 -1.4931 -3.3840 38 1 6.1927 -1.6086 -5.8098 39 1 4.4586 -1.2419 -5.6345 40 1 6.3282 2.7916 -5.6454 41 1 7.6920 2.5300 -6.5911 42 1 5.3906 2.2629 -4.4021 43 1 3.9352 1.2831 -4.7164 44 1 6.0337 0.7915 -2.5533 45 1 4.3556 1.3301 -2.3022 46 1 3.1178 -2.6401 0.7590 47 1 4.1895 -1.2842 1.2112 48 1 3.3238 0.7998 1.9555 49 1 1.6713 0.7887 2.6169 50 1 2.9767 -1.5749 3.4445 51 1 4.1713 -2.5155 6.4137 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106964329.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:52 Heat of formation + Delta-G solvation = -54.974179 kcal Electronic energy + Delta-G solvation = -30318.766502 eV Core-core repulsion = 26253.024613 eV Total energy + Delta-G solvation = -4065.741888 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.89784 -40.03236 -38.33564 -37.05984 -34.66237 -34.32181 -33.06982 -32.57161 -31.42688 -31.31495 -29.16484 -26.85612 -26.27132 -25.09592 -23.73740 -23.30213 -22.03774 -21.16730 -20.19257 -19.66329 -19.27905 -18.54640 -17.36000 -17.25042 -16.87619 -16.15080 -15.71867 -15.50417 -15.19704 -14.86420 -14.68323 -14.51974 -14.16464 -13.99734 -13.62941 -13.59837 -13.44019 -13.23863 -12.92865 -12.83274 -12.73677 -12.59390 -12.15042 -11.92792 -11.75788 -11.67538 -11.47562 -11.17890 -11.04326 -11.00286 -10.87638 -10.61638 -10.51291 -10.49873 -10.33009 -10.03247 -9.97775 -9.70775 -9.66307 -8.97581 -8.89057 -8.57770 -6.93225 -5.76592 -3.05691 2.41421 2.63959 2.85266 2.99861 3.43650 3.48847 3.51411 3.73440 4.22112 4.32468 4.40397 4.48328 4.58382 4.63492 4.79266 4.79519 4.87213 4.93292 5.03265 5.09354 5.27212 5.29463 5.32409 5.37590 5.43559 5.47053 5.49397 5.56835 5.60761 5.68286 5.74171 5.77068 5.95803 6.02428 6.05343 6.06997 6.13070 6.16725 6.26598 6.40514 6.42264 6.44854 6.56750 6.69489 6.83662 7.48269 7.62413 7.69890 8.23239 8.27611 8.41924 9.53246 10.09982 10.44260 11.46257 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.014928 B = 0.002408 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.262480 B =11623.437712 C =12354.768548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.100 4.100 3 H 0.083 0.917 4 C 0.103 3.897 5 N -0.619 5.619 6 C 0.532 3.468 7 O -0.534 6.534 8 C -0.099 4.099 9 C -0.119 4.119 10 C 0.130 3.870 11 N -0.628 5.628 12 C 0.710 3.290 13 N -0.869 5.869 14 O -0.594 6.594 15 C 0.115 3.885 16 C -0.124 4.124 17 C 0.111 3.889 18 C -0.103 4.103 19 H 0.086 0.914 20 C 0.164 3.836 21 N -0.733 5.733 22 C -0.240 4.240 23 H 0.070 0.930 24 C -0.013 4.013 25 N -0.932 5.932 26 Si 0.907 3.093 27 H -0.281 1.281 28 H -0.291 1.291 29 H -0.291 1.291 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.098 0.902 39 H 0.067 0.933 40 H 0.396 0.604 41 H 0.413 0.587 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.078 0.922 45 H 0.083 0.917 46 H 0.063 0.937 47 H 0.089 0.911 48 H 0.018 0.982 49 H 0.021 0.979 50 H 0.384 0.616 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.525 7.808 -25.448 27.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.120 4.120 3 H 0.102 0.898 4 C -0.020 4.020 5 N -0.353 5.353 6 C 0.320 3.680 7 O -0.410 6.410 8 C -0.121 4.121 9 C -0.158 4.158 10 C 0.007 3.993 11 N -0.367 5.367 12 C 0.410 3.590 13 N -0.439 5.439 14 O -0.472 6.472 15 C -0.008 4.008 16 C -0.163 4.163 17 C -0.011 4.011 18 C -0.122 4.122 19 H 0.104 0.896 20 C 0.036 3.964 21 N -0.377 5.377 22 C -0.371 4.371 23 H 0.088 0.912 24 C -0.209 4.209 25 N -0.580 5.580 26 Si 0.738 3.262 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.218 1.218 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.109 0.891 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.117 0.883 39 H 0.086 0.914 40 H 0.226 0.774 41 H 0.245 0.755 42 H 0.100 0.900 43 H 0.092 0.908 44 H 0.097 0.903 45 H 0.101 0.899 46 H 0.081 0.919 47 H 0.108 0.892 48 H 0.036 0.964 49 H 0.039 0.961 50 H 0.218 0.782 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.440 7.043 -25.482 26.808 hybrid contribution 0.195 0.624 1.158 1.330 sum -4.246 7.667 -24.324 25.854 Atomic orbital electron populations 1.21729 0.93847 1.02036 1.02123 1.22218 0.96017 0.99683 0.94042 0.89837 1.22589 0.83311 0.98586 0.97538 1.48893 1.08055 1.66057 1.12307 1.20159 0.81994 0.78606 0.87234 1.90748 1.31453 1.45911 1.72841 1.21241 1.01464 0.96537 0.92856 1.21829 1.01040 0.99148 0.93797 1.21516 1.01729 0.79207 0.96823 1.47272 1.36328 1.08641 1.44411 1.15847 0.80518 0.82759 0.79874 1.43157 1.34853 1.05706 1.60165 1.90961 1.49149 1.57224 1.49828 1.21645 0.96244 0.93134 0.89820 1.21848 1.03622 0.94242 0.96542 1.22170 1.00198 0.98790 0.79946 1.22391 0.96609 0.97970 0.95233 0.89574 1.20682 0.96068 0.92795 0.86865 1.42373 1.77142 1.05719 1.12458 1.19237 1.34677 0.91225 0.91953 0.91206 1.24745 1.02204 0.95478 0.98518 1.69670 1.53319 1.04143 1.30903 0.86125 0.78225 0.78550 0.83327 1.20586 1.21864 1.21835 0.91746 0.92702 0.92415 0.90477 0.90885 0.89146 0.90163 0.89937 0.88346 0.91435 0.77373 0.75462 0.90006 0.90816 0.90286 0.89872 0.91863 0.89242 0.96406 0.96084 0.78244 0.93528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.17 37.16 0.34 -0.86 16 2 C -0.10 -1.05 3.19 -88.93 -0.28 -1.33 16 3 H 0.08 0.89 7.87 -51.93 -0.41 0.48 16 4 C 0.10 0.94 6.20 -2.31 -0.01 0.93 16 5 N -0.62 -8.19 3.29 -169.98 -0.56 -8.74 16 6 C 0.53 7.48 6.88 -10.99 -0.08 7.40 16 7 O -0.53 -10.15 16.68 5.55 0.09 -10.06 16 8 C -0.10 -0.92 2.06 -91.74 -0.19 -1.11 16 9 C -0.12 -1.16 4.99 -26.61 -0.13 -1.29 16 10 C 0.13 1.10 6.44 -3.71 -0.02 1.07 16 11 N -0.63 -5.19 2.97 -178.50 -0.53 -5.73 16 12 C 0.71 7.25 8.57 -86.92 -0.74 6.50 16 13 N -0.87 -5.19 8.74 27.63 0.24 -4.95 16 14 O -0.59 -8.71 16.60 5.29 0.09 -8.62 16 15 C 0.12 0.63 6.35 -3.71 -0.02 0.60 16 16 C -0.12 -0.97 5.34 -26.62 -0.14 -1.11 16 17 C 0.11 1.80 6.30 -2.98 -0.02 1.78 16 18 C -0.10 -1.52 2.64 -89.25 -0.24 -1.75 16 19 H 0.09 1.29 7.85 -51.93 -0.41 0.88 16 20 C 0.16 3.15 5.35 -4.05 -0.02 3.13 16 21 N -0.73 -18.31 5.33 -59.91 -0.32 -18.63 16 22 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 23 H 0.07 1.91 7.83 -52.48 -0.41 1.49 16 24 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 25 N -0.93 -28.40 13.06 55.49 0.72 -27.68 16 26 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 27 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 28 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 29 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.48 8.11 -51.93 -0.42 0.06 16 33 H 0.08 0.50 6.72 -51.93 -0.35 0.15 16 34 H 0.07 0.60 8.02 -51.93 -0.42 0.19 16 35 H 0.09 0.62 6.57 -51.93 -0.34 0.27 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.08 1.02 7.90 -51.93 -0.41 0.61 16 38 H 0.10 0.99 7.00 -51.93 -0.36 0.62 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.40 1.25 6.42 -40.82 -0.26 0.99 16 41 H 0.41 2.07 8.93 -40.82 -0.36 1.70 16 42 H 0.08 0.28 5.74 -51.93 -0.30 -0.02 16 43 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 44 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.09 1.82 7.53 -51.93 -0.39 1.43 16 48 H 0.02 0.36 8.14 -51.92 -0.42 -0.06 16 49 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 50 H 0.38 10.10 7.51 -40.82 -0.31 9.80 16 51 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 400.23 15.07 6.03 6.03 Total: -1.00 -37.51 400.23 -9.58 -47.10 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -8.51 Total: 7.08 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: -1.81 Total: 6.61 kcal Atomic # 7 Polarization: -65.28 SS G_CDS: -0.44 Total: -65.73 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: 0.18 Total: -18.68 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -37.51 -9.58 -47.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106964329.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.879 kcal (2) G-P(sol) polarization free energy of solvation -37.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds