Wall clock time and date at job start Tue Mar 31 2020 22:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.46916 * 2 1 4 4 C 1.52995 * 109.47295 * 239.99616 * 2 1 3 5 5 C 1.50697 * 109.46910 * 174.99819 * 4 2 1 6 6 O 1.21284 * 120.00280 * 0.02562 * 5 4 2 7 7 N 1.34774 * 119.99787 * 179.97438 * 5 4 2 8 8 C 1.46504 * 119.99953 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.46897 * 180.02562 * 8 7 5 10 10 C 1.53361 * 111.22833 * 297.62818 * 9 8 7 11 11 C 1.55537 * 105.83981 * 241.97444 * 10 9 8 12 12 C 1.54684 * 104.34984 * 334.36000 * 11 10 9 13 13 C 1.54581 * 111.31566 * 177.45686 * 9 8 7 14 14 H 1.08999 * 111.92582 * 18.71223 * 13 9 8 15 15 N 1.46891 * 107.36543 * 255.61949 * 13 9 8 16 16 C 1.36941 * 125.24685 * 181.63679 * 15 13 9 17 17 H 1.07994 * 119.99998 * 359.97438 * 16 15 13 18 18 C 1.38809 * 119.99643 * 180.02562 * 16 15 13 19 19 N 1.31620 * 120.00228 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99971 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47023 * 60.00147 * 20 18 16 22 22 H 1.48503 * 109.47327 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47475 * 299.99988 * 20 18 16 24 24 C 1.46736 * 109.50016 * 1.65801 * 15 13 9 25 25 C 1.53857 * 111.26229 * 61.01859 * 9 8 7 26 26 N 1.46500 * 109.46837 * 119.99433 * 2 1 3 27 27 C 1.34773 * 120.00431 * 275.00470 * 26 2 1 28 28 N 1.34777 * 120.00097 * 179.72742 * 27 26 2 29 29 O 1.21593 * 119.99894 * 359.97438 * 27 26 2 30 30 H 1.09004 * 109.46414 * 60.00139 * 1 2 3 31 31 H 1.08994 * 109.47203 * 180.02562 * 1 2 3 32 32 H 1.08991 * 109.47246 * 300.00614 * 1 2 3 33 33 H 1.08994 * 109.47294 * 295.00555 * 4 2 1 34 34 H 1.09007 * 109.46880 * 55.00617 * 4 2 1 35 35 H 0.97005 * 120.00239 * 0.02562 * 7 5 4 36 36 H 1.08993 * 109.47470 * 300.00080 * 8 7 5 37 37 H 1.09007 * 109.46699 * 60.00748 * 8 7 5 38 38 H 1.08999 * 110.05459 * 1.98060 * 10 9 8 39 39 H 1.09002 * 110.05273 * 123.47594 * 10 9 8 40 40 H 1.08994 * 110.54265 * 215.54943 * 11 10 9 41 41 H 1.09000 * 110.35015 * 93.07067 * 11 10 9 42 42 H 1.08996 * 110.61799 * 278.64785 * 12 11 10 43 43 H 1.09003 * 110.61670 * 155.66272 * 12 11 10 44 44 H 0.96998 * 120.00111 * 180.02562 * 19 18 16 45 45 H 1.09001 * 110.03913 * 221.96885 * 24 15 13 46 46 H 1.09000 * 110.04562 * 100.51041 * 24 15 13 47 47 H 1.08998 * 110.57369 * 212.51456 * 25 9 8 48 48 H 1.08999 * 110.56843 * 335.23884 * 25 9 8 49 49 H 0.97000 * 119.99456 * 95.00032 * 26 2 1 50 50 H 0.96999 * 120.00043 * 180.27820 * 28 27 26 51 51 H 0.97000 * 119.99736 * 0.26819 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5420 -0.6149 -1.3126 6 8 4.1451 -0.0210 -0.4439 7 7 4.2150 -1.1805 -2.3340 8 6 5.6752 -1.0776 -2.3954 9 6 6.1852 -1.7988 -3.6447 10 6 5.8512 -3.2949 -3.5974 11 6 7.2189 -4.0355 -3.6024 12 6 8.1869 -3.0484 -4.2962 13 6 7.7185 -1.6625 -3.7856 14 1 8.1903 -1.3805 -2.8444 15 7 7.9756 -0.6757 -4.8429 16 6 9.2146 -0.2997 -5.2886 17 1 10.1008 -0.7390 -4.8550 18 6 9.3316 0.6469 -6.2971 19 7 8.2516 1.1828 -6.8252 20 14 11.0217 1.1604 -6.9047 21 1 11.7361 -0.0257 -7.4414 22 1 10.8744 2.1764 -7.9778 23 1 11.7982 1.7383 -5.7785 24 6 6.7000 -0.1546 -5.3472 25 6 5.6160 -1.1654 -4.9261 26 7 2.0183 -0.6905 1.1963 27 6 2.1470 -0.0182 2.3572 28 7 2.5910 -0.6548 3.4590 29 8 1.8582 1.1617 2.4116 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8898 33 1 1.7517 -1.7715 -1.2055 34 1 1.6055 -0.2617 -2.1369 35 1 3.7327 -1.6558 -3.0286 36 1 5.9639 -0.0275 -2.4393 37 1 6.1094 -1.5371 -1.5075 38 1 5.2866 -3.5234 -2.6935 39 1 5.2764 -3.5776 -4.4794 40 1 7.1491 -4.9638 -4.1693 41 1 7.5451 -4.2361 -2.5818 42 1 8.0879 -3.1116 -5.3799 43 1 9.2156 -3.2418 -3.9920 44 1 8.3333 1.8440 -7.5302 45 1 6.7331 -0.0733 -6.4337 46 1 6.4937 0.8203 -4.9054 47 1 5.4770 -1.9220 -5.6983 48 1 4.6752 -0.6564 -4.7164 49 1 2.2490 -1.6317 1.1527 50 1 2.6797 -0.1719 4.2956 51 1 2.8216 -1.5960 3.4155 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107405647.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:00 Heat of formation + Delta-G solvation = -55.787182 kcal Electronic energy + Delta-G solvation = -30611.447430 eV Core-core repulsion = 26545.670288 eV Total energy + Delta-G solvation = -4065.777143 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -40.38718 -39.77746 -38.86319 -35.92164 -34.69350 -33.95641 -33.81340 -31.79893 -31.16259 -30.32709 -28.71297 -27.30246 -26.70484 -24.35568 -23.84998 -22.54722 -21.04185 -20.56317 -20.08899 -19.78001 -18.56919 -18.24722 -17.42500 -17.14629 -16.73875 -15.90197 -15.57874 -15.22324 -14.99506 -14.80995 -14.73088 -14.26230 -14.21718 -13.75136 -13.55692 -13.23640 -13.17191 -12.96779 -12.64798 -12.58207 -12.14329 -12.11331 -11.85464 -11.49000 -11.29679 -11.22470 -11.14658 -10.81141 -10.73657 -10.69388 -10.32726 -10.29174 -10.15560 -10.09361 -9.86474 -9.79296 -9.70166 -9.59364 -9.47721 -9.11706 -8.86455 -8.59254 -6.81733 -5.65575 -3.04550 2.68227 2.81570 3.20577 3.24098 3.41073 3.45819 3.46622 4.32922 4.45176 4.49668 4.64060 4.89019 4.92834 4.96751 5.00867 5.18451 5.24599 5.30037 5.47421 5.50758 5.53271 5.54552 5.73598 5.80939 5.81418 5.85941 5.98740 6.00933 6.05958 6.06195 6.17653 6.27849 6.36854 6.41013 6.42081 6.45939 6.58288 6.61501 6.67692 6.75164 6.80190 6.84624 7.10504 7.55059 7.58623 7.67823 7.86447 7.86718 8.30881 8.35806 8.57877 9.24948 9.86009 10.49153 11.40003 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.016030 B = 0.002527 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.253136 B =11078.981274 C =11535.064210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.175 3.825 3 H 0.097 0.903 4 C -0.152 4.152 5 C 0.503 3.497 6 O -0.530 6.530 7 N -0.724 5.724 8 C 0.142 3.858 9 C -0.082 4.082 10 C -0.110 4.110 11 C -0.122 4.122 12 C -0.130 4.130 13 C 0.173 3.827 14 H 0.046 0.954 15 N -0.596 5.596 16 C -0.221 4.221 17 H 0.076 0.924 18 C -0.010 4.010 19 N -0.923 5.923 20 Si 0.912 3.088 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C 0.163 3.837 25 C -0.132 4.132 26 N -0.729 5.729 27 C 0.712 3.288 28 N -0.870 5.870 29 O -0.596 6.596 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.110 0.890 35 H 0.398 0.602 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.072 0.928 43 H 0.054 0.946 44 H 0.252 0.748 45 H 0.092 0.908 46 H 0.012 0.988 47 H 0.060 0.940 48 H 0.056 0.944 49 H 0.392 0.608 50 H 0.412 0.588 51 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.708 -12.163 12.159 23.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.070 3.930 3 H 0.115 0.885 4 C -0.193 4.193 5 C 0.289 3.711 6 O -0.406 6.406 7 N -0.376 5.376 8 C 0.019 3.981 9 C -0.083 4.083 10 C -0.147 4.147 11 C -0.160 4.160 12 C -0.170 4.170 13 C 0.065 3.935 14 H 0.064 0.936 15 N -0.319 5.319 16 C -0.350 4.350 17 H 0.094 0.906 18 C -0.206 4.206 19 N -0.571 5.571 20 Si 0.742 3.258 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.213 1.213 24 C 0.038 3.962 25 C -0.171 4.171 26 N -0.384 5.384 27 C 0.410 3.590 28 N -0.438 5.438 29 O -0.474 6.474 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.115 0.885 34 H 0.128 0.872 35 H 0.233 0.767 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.090 0.910 43 H 0.072 0.928 44 H 0.062 0.938 45 H 0.110 0.890 46 H 0.030 0.970 47 H 0.079 0.921 48 H 0.074 0.926 49 H 0.225 0.775 50 H 0.244 0.756 51 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -15.458 -10.523 12.473 22.478 hybrid contribution 1.030 -0.692 -0.428 1.312 sum -14.428 -11.215 12.045 21.887 Atomic orbital electron populations 1.22217 0.94983 1.02043 1.02975 1.20509 0.93038 0.97963 0.81538 0.88465 1.22073 0.93382 1.03397 1.00445 1.20545 0.89704 0.79055 0.81826 1.90771 1.70096 1.41369 1.38363 1.46100 1.08455 1.56639 1.26404 1.21312 0.78410 1.01300 0.97108 1.21873 0.97452 0.94402 0.94547 1.22366 0.97473 0.93972 1.00928 1.22519 0.95415 0.98061 1.00045 1.22996 0.97591 0.95672 1.00775 1.21521 0.90215 0.89611 0.92202 0.93636 1.44322 1.02586 1.45858 1.39182 1.18983 0.83226 1.18153 1.14589 0.90615 1.24771 0.97252 0.99193 0.99335 1.69869 1.25796 1.31853 1.29555 0.86198 0.83383 0.77972 0.78214 1.21232 1.21655 1.21251 1.21431 0.81839 0.91563 1.01359 1.22786 0.99296 0.99906 0.95105 1.44927 1.71388 1.13122 1.08920 1.15862 0.77678 0.84835 0.80595 1.42962 1.74053 1.14743 1.12047 1.90953 1.57429 1.14307 1.84707 0.91372 0.92531 0.91672 0.88547 0.87197 0.76728 0.91063 0.91929 0.92324 0.91831 0.92560 0.92474 0.90965 0.92768 0.93779 0.88968 0.97009 0.92148 0.92551 0.77533 0.75606 0.77837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 9.48 37.16 0.35 -0.91 16 2 C 0.18 1.71 2.14 -67.93 -0.15 1.57 16 3 H 0.10 1.32 7.39 -51.93 -0.38 0.94 16 4 C -0.15 -1.17 5.24 -27.89 -0.15 -1.31 16 5 C 0.50 6.12 7.69 -10.99 -0.08 6.03 16 6 O -0.53 -8.93 15.35 5.55 0.09 -8.84 16 7 N -0.72 -8.42 4.65 -60.29 -0.28 -8.70 16 8 C 0.14 2.15 4.43 -4.04 -0.02 2.13 16 9 C -0.08 -1.27 0.53 -153.04 -0.08 -1.35 16 10 C -0.11 -1.38 5.75 -25.20 -0.14 -1.52 16 11 C -0.12 -1.64 6.88 -24.50 -0.17 -1.81 16 12 C -0.13 -2.28 6.23 -24.82 -0.15 -2.44 16 13 C 0.17 3.37 3.60 -65.86 -0.24 3.14 16 14 H 0.05 0.93 7.93 -51.93 -0.41 0.52 16 15 N -0.60 -14.53 2.99 -162.42 -0.49 -15.02 16 16 C -0.22 -6.00 9.96 -15.06 -0.15 -6.15 16 17 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 18 C -0.01 -0.28 5.48 -17.43 -0.10 -0.37 16 19 N -0.92 -26.67 10.14 55.49 0.56 -26.11 16 20 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 C 0.16 3.82 5.65 -3.35 -0.02 3.80 16 25 C -0.13 -2.27 5.77 -25.72 -0.15 -2.42 16 26 N -0.73 -7.02 4.22 -58.67 -0.25 -7.27 16 27 C 0.71 8.71 8.80 -86.92 -0.77 7.94 16 28 N -0.87 -6.85 8.88 27.63 0.25 -6.60 16 29 O -0.60 -10.11 16.84 5.28 0.09 -10.02 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.40 3.65 7.55 -40.82 -0.31 3.34 16 36 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.06 0.64 7.51 -51.93 -0.39 0.25 16 39 H 0.06 0.76 7.28 -51.93 -0.38 0.38 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.07 1.42 8.06 -51.93 -0.42 1.00 16 43 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 45 H 0.09 2.45 6.16 -51.93 -0.32 2.13 16 46 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.06 1.00 7.42 -51.93 -0.39 0.62 16 48 H 0.06 0.86 7.02 -51.93 -0.36 0.49 16 49 H 0.39 2.73 8.62 -40.82 -0.35 2.38 16 50 H 0.41 2.89 8.93 -40.82 -0.36 2.52 16 51 H 0.39 1.87 8.84 -40.82 -0.36 1.51 16 LS Contribution 399.98 15.07 6.03 6.03 Total: -1.00 -35.81 399.98 -9.66 -45.47 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -8.63 Total: 7.70 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: -2.00 Total: 6.33 kcal Atomic # 7 Polarization: -63.49 SS G_CDS: -0.20 Total: -63.70 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: 0.17 Total: -18.87 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.81 -9.66 -45.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107405647.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.317 kcal (2) G-P(sol) polarization free energy of solvation -35.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds