Wall clock time and date at job start Tue Mar 31 2020 22:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.46916 * 2 1 4 4 C 1.52995 * 109.47295 * 239.99616 * 2 1 3 5 5 C 1.50697 * 109.46910 * 174.99819 * 4 2 1 6 6 O 1.21284 * 120.00280 * 0.02562 * 5 4 2 7 7 N 1.34774 * 119.99787 * 179.97438 * 5 4 2 8 8 C 1.46504 * 119.99953 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.46897 * 180.02562 * 8 7 5 10 10 C 1.53361 * 111.22833 * 297.62818 * 9 8 7 11 11 C 1.55537 * 105.83981 * 241.97444 * 10 9 8 12 12 C 1.54684 * 104.34984 * 334.36000 * 11 10 9 13 13 C 1.54581 * 111.31566 * 177.45686 * 9 8 7 14 14 H 1.08999 * 111.92582 * 18.71223 * 13 9 8 15 15 N 1.46891 * 107.36543 * 255.61949 * 13 9 8 16 16 C 1.36941 * 125.24685 * 181.63679 * 15 13 9 17 17 H 1.07994 * 119.99998 * 359.97438 * 16 15 13 18 18 C 1.38809 * 119.99643 * 180.02562 * 16 15 13 19 19 N 1.31620 * 120.00228 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99971 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47023 * 60.00147 * 20 18 16 22 22 H 1.48503 * 109.47327 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47475 * 299.99988 * 20 18 16 24 24 C 1.46736 * 109.50016 * 1.65801 * 15 13 9 25 25 C 1.53857 * 111.26229 * 61.01859 * 9 8 7 26 26 N 1.46500 * 109.46837 * 119.99433 * 2 1 3 27 27 C 1.34773 * 120.00431 * 275.00470 * 26 2 1 28 28 N 1.34777 * 120.00097 * 179.72742 * 27 26 2 29 29 O 1.21593 * 119.99894 * 359.97438 * 27 26 2 30 30 H 1.09004 * 109.46414 * 60.00139 * 1 2 3 31 31 H 1.08994 * 109.47203 * 180.02562 * 1 2 3 32 32 H 1.08991 * 109.47246 * 300.00614 * 1 2 3 33 33 H 1.08994 * 109.47294 * 295.00555 * 4 2 1 34 34 H 1.09007 * 109.46880 * 55.00617 * 4 2 1 35 35 H 0.97005 * 120.00239 * 0.02562 * 7 5 4 36 36 H 1.08993 * 109.47470 * 300.00080 * 8 7 5 37 37 H 1.09007 * 109.46699 * 60.00748 * 8 7 5 38 38 H 1.08999 * 110.05459 * 1.98060 * 10 9 8 39 39 H 1.09002 * 110.05273 * 123.47594 * 10 9 8 40 40 H 1.08994 * 110.54265 * 215.54943 * 11 10 9 41 41 H 1.09000 * 110.35015 * 93.07067 * 11 10 9 42 42 H 1.08996 * 110.61799 * 278.64785 * 12 11 10 43 43 H 1.09003 * 110.61670 * 155.66272 * 12 11 10 44 44 H 0.96998 * 120.00111 * 180.02562 * 19 18 16 45 45 H 1.09001 * 110.03913 * 221.96885 * 24 15 13 46 46 H 1.09000 * 110.04562 * 100.51041 * 24 15 13 47 47 H 1.08998 * 110.57369 * 212.51456 * 25 9 8 48 48 H 1.08999 * 110.56843 * 335.23884 * 25 9 8 49 49 H 0.97000 * 119.99456 * 95.00032 * 26 2 1 50 50 H 0.96999 * 120.00043 * 180.27820 * 28 27 26 51 51 H 0.97000 * 119.99736 * 0.26819 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5420 -0.6149 -1.3126 6 8 4.1451 -0.0210 -0.4439 7 7 4.2150 -1.1805 -2.3340 8 6 5.6752 -1.0776 -2.3954 9 6 6.1852 -1.7988 -3.6447 10 6 5.8512 -3.2949 -3.5974 11 6 7.2189 -4.0355 -3.6024 12 6 8.1869 -3.0484 -4.2962 13 6 7.7185 -1.6625 -3.7856 14 1 8.1903 -1.3805 -2.8444 15 7 7.9756 -0.6757 -4.8429 16 6 9.2146 -0.2997 -5.2886 17 1 10.1008 -0.7390 -4.8550 18 6 9.3316 0.6469 -6.2971 19 7 8.2516 1.1828 -6.8252 20 14 11.0217 1.1604 -6.9047 21 1 11.7361 -0.0257 -7.4414 22 1 10.8744 2.1764 -7.9778 23 1 11.7982 1.7383 -5.7785 24 6 6.7000 -0.1546 -5.3472 25 6 5.6160 -1.1654 -4.9261 26 7 2.0183 -0.6905 1.1963 27 6 2.1470 -0.0182 2.3572 28 7 2.5910 -0.6548 3.4590 29 8 1.8582 1.1617 2.4116 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8898 33 1 1.7517 -1.7715 -1.2055 34 1 1.6055 -0.2617 -2.1369 35 1 3.7327 -1.6558 -3.0286 36 1 5.9639 -0.0275 -2.4393 37 1 6.1094 -1.5371 -1.5075 38 1 5.2866 -3.5234 -2.6935 39 1 5.2764 -3.5776 -4.4794 40 1 7.1491 -4.9638 -4.1693 41 1 7.5451 -4.2361 -2.5818 42 1 8.0879 -3.1116 -5.3799 43 1 9.2156 -3.2418 -3.9920 44 1 8.3333 1.8440 -7.5302 45 1 6.7331 -0.0733 -6.4337 46 1 6.4937 0.8203 -4.9054 47 1 5.4770 -1.9220 -5.6983 48 1 4.6752 -0.6564 -4.7164 49 1 2.2490 -1.6317 1.1527 50 1 2.6797 -0.1719 4.2956 51 1 2.8216 -1.5960 3.4155 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107405647.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:57 Heat of formation + Delta-G solvation = -84.497394 kcal Electronic energy + Delta-G solvation = -30612.692398 eV Core-core repulsion = 26545.670288 eV Total energy + Delta-G solvation = -4067.022111 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 2.50 seconds Orbital eigenvalues (eV) -41.45603 -40.90467 -40.01553 -36.81669 -36.20192 -35.30923 -34.69426 -33.45446 -32.26853 -31.65853 -29.78075 -28.41959 -28.28166 -25.75721 -25.51270 -23.39814 -22.21314 -21.68297 -21.43815 -21.02042 -19.71824 -19.27504 -18.87599 -18.17403 -17.95775 -16.87042 -16.70563 -16.67211 -16.25374 -16.10169 -15.89060 -15.59849 -15.17962 -15.12567 -14.75828 -14.55472 -14.38977 -14.17399 -13.87333 -13.45817 -13.36479 -13.22670 -12.95546 -12.89784 -12.79976 -12.72491 -12.58826 -12.41727 -12.06116 -11.92510 -11.85571 -11.61591 -11.51305 -11.39174 -11.37896 -11.31928 -11.01753 -10.78712 -10.67666 -10.65279 -10.00911 -9.86154 -8.83183 -7.77678 -5.17840 1.43600 1.46444 1.52490 1.75660 2.05444 2.24637 2.31767 2.49753 3.32896 3.51698 3.67924 3.69165 3.73807 3.76434 3.88073 4.01435 4.30028 4.30737 4.40652 4.45763 4.49514 4.55269 4.61898 4.67296 4.71372 4.77087 4.80581 4.88595 4.90501 4.96717 5.07593 5.12198 5.17699 5.21650 5.32564 5.38224 5.41305 5.45128 5.50672 5.57297 5.63049 5.66629 5.72580 5.87880 5.95482 6.08806 6.31499 6.67861 7.14807 7.18422 7.39299 7.75076 7.85229 8.45875 9.25754 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.016030 B = 0.002527 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.253136 B =11078.981274 C =11535.064210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.171 3.829 3 H 0.048 0.952 4 C -0.136 4.136 5 C 0.501 3.499 6 O -0.583 6.583 7 N -0.710 5.710 8 C 0.155 3.845 9 C -0.067 4.067 10 C -0.098 4.098 11 C -0.112 4.112 12 C -0.126 4.126 13 C 0.155 3.845 14 H 0.031 0.969 15 N -0.615 5.615 16 C -0.230 4.230 17 H 0.076 0.924 18 C -0.069 4.069 19 N -0.950 5.950 20 Si 0.973 3.027 21 H -0.275 1.275 22 H -0.295 1.295 23 H -0.283 1.283 24 C 0.167 3.833 25 C -0.115 4.115 26 N -0.718 5.718 27 C 0.699 3.301 28 N -0.853 5.853 29 O -0.653 6.653 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.037 0.963 33 H 0.143 0.857 34 H 0.136 0.864 35 H 0.417 0.583 36 H 0.023 0.977 37 H 0.064 0.936 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.048 0.952 43 H 0.046 0.954 44 H 0.244 0.756 45 H 0.056 0.944 46 H -0.032 1.032 47 H 0.076 0.924 48 H 0.080 0.920 49 H 0.408 0.592 50 H 0.417 0.583 51 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.650 -16.097 12.462 26.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.065 3.935 3 H 0.066 0.934 4 C -0.176 4.176 5 C 0.289 3.711 6 O -0.463 6.463 7 N -0.363 5.363 8 C 0.030 3.970 9 C -0.068 4.068 10 C -0.136 4.136 11 C -0.150 4.150 12 C -0.165 4.165 13 C 0.048 3.952 14 H 0.048 0.952 15 N -0.339 5.339 16 C -0.359 4.359 17 H 0.094 0.906 18 C -0.261 4.261 19 N -0.600 5.600 20 Si 0.802 3.198 21 H -0.201 1.201 22 H -0.221 1.221 23 H -0.210 1.210 24 C 0.042 3.958 25 C -0.153 4.153 26 N -0.373 5.373 27 C 0.397 3.603 28 N -0.421 5.421 29 O -0.535 6.535 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.056 0.944 33 H 0.161 0.839 34 H 0.154 0.846 35 H 0.254 0.746 36 H 0.042 0.958 37 H 0.082 0.918 38 H 0.108 0.892 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.090 0.910 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.054 0.946 45 H 0.074 0.926 46 H -0.014 1.014 47 H 0.095 0.905 48 H 0.098 0.902 49 H 0.243 0.757 50 H 0.249 0.751 51 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -17.408 -14.577 12.781 26.056 hybrid contribution 1.710 0.569 -0.464 1.861 sum -15.699 -14.008 12.318 24.380 Atomic orbital electron populations 1.22123 0.92998 1.03634 1.02427 1.20520 0.94485 0.95936 0.82593 0.93366 1.22093 0.89260 1.06174 1.00096 1.21387 0.91539 0.77516 0.80690 1.90769 1.71562 1.43498 1.40445 1.45893 1.06769 1.56657 1.26965 1.20922 0.80844 0.98317 0.96922 1.21750 0.94203 0.97176 0.93631 1.22349 0.97534 0.90220 1.03487 1.22477 0.94277 0.97645 1.00587 1.22819 0.98625 0.95489 0.99600 1.21838 0.93559 0.89546 0.90254 0.95168 1.44602 1.02084 1.46778 1.40418 1.19324 0.84675 1.17726 1.14185 0.90580 1.25563 1.00581 0.99855 1.00097 1.70127 1.27483 1.32379 1.29992 0.85222 0.79571 0.77605 0.77387 1.20073 1.22111 1.20985 1.21189 0.83949 0.91834 0.98842 1.22628 0.97892 0.98615 0.96215 1.44834 1.70639 1.13716 1.08143 1.16232 0.77719 0.84418 0.81907 1.42777 1.72653 1.15564 1.11119 1.90910 1.59940 1.16955 1.85720 0.89879 0.89710 0.94353 0.83870 0.84576 0.74580 0.95850 0.91809 0.89191 0.89844 0.90277 0.91037 0.93305 0.93486 0.94618 0.92563 1.01367 0.90548 0.90184 0.75654 0.75101 0.75753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.48 71.98 0.68 -1.32 16 2 C 0.17 3.09 2.14 44.99 0.10 3.18 16 3 H 0.05 1.37 7.39 -2.39 -0.02 1.35 16 4 C -0.14 -1.55 5.24 29.85 0.16 -1.39 16 5 C 0.50 11.05 7.69 87.66 0.67 11.73 16 6 O -0.58 -19.63 15.35 -3.04 -0.05 -19.68 16 7 N -0.71 -14.34 4.65 -463.05 -2.15 -16.49 16 8 C 0.15 4.52 4.43 86.38 0.38 4.91 16 9 C -0.07 -1.95 0.53 -51.23 -0.03 -1.98 16 10 C -0.10 -1.98 5.75 31.59 0.18 -1.80 16 11 C -0.11 -2.54 6.88 32.04 0.22 -2.32 16 12 C -0.13 -4.26 6.23 31.83 0.20 -4.06 16 13 C 0.15 6.09 3.60 46.12 0.17 6.25 16 14 H 0.03 1.28 7.93 -2.39 -0.02 1.26 16 15 N -0.61 -31.21 2.99 -667.79 -1.99 -33.20 16 16 C -0.23 -12.96 9.96 84.03 0.84 -12.13 16 17 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 18 C -0.07 -3.96 5.48 84.86 0.47 -3.49 16 19 N -0.95 -57.67 10.14 21.65 0.22 -57.45 16 20 Si 0.97 46.74 29.55 68.60 2.03 48.77 16 21 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 22 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 23 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 24 C 0.17 8.19 5.65 86.70 0.49 8.68 16 25 C -0.12 -3.80 5.77 31.25 0.18 -3.62 16 26 N -0.72 -12.76 4.22 -457.80 -1.93 -14.70 16 27 C 0.70 17.07 8.80 179.06 1.58 18.64 16 28 N -0.85 -12.63 8.88 -184.74 -1.64 -14.27 16 29 O -0.65 -23.19 16.84 -4.01 -0.07 -23.25 16 30 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.08 0.64 8.14 -2.39 -0.02 0.63 16 32 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.14 0.40 8.14 -2.39 -0.02 0.39 16 34 H 0.14 0.96 8.14 -2.38 -0.02 0.94 16 35 H 0.42 5.51 7.55 -92.70 -0.70 4.81 16 36 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 38 H 0.09 1.35 7.51 -2.39 -0.02 1.34 16 39 H 0.08 1.45 7.28 -2.39 -0.02 1.44 16 40 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.05 1.88 8.06 -2.39 -0.02 1.86 16 43 H 0.05 1.61 8.14 -2.39 -0.02 1.60 16 44 H 0.24 14.52 8.31 -92.71 -0.77 13.75 16 45 H 0.06 3.15 6.16 -2.39 -0.01 3.14 16 46 H -0.03 -1.78 8.14 -2.39 -0.02 -1.80 16 47 H 0.08 2.33 7.42 -2.39 -0.02 2.31 16 48 H 0.08 2.26 7.02 -2.39 -0.02 2.24 16 49 H 0.41 4.45 8.62 -92.71 -0.80 3.65 16 50 H 0.42 5.61 8.93 -92.71 -0.83 4.78 16 51 H 0.41 3.09 8.84 -92.71 -0.82 2.27 16 Total: -1.00 -88.34 399.98 -1.48 -89.82 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: -2.17 Total: 19.18 kcal Atomic # 6 Polarization: 14.99 SS G_CDS: 6.28 Total: 21.27 kcal Atomic # 7 Polarization: -128.61 SS G_CDS: -7.50 Total: -136.11 kcal Atomic # 8 Polarization: -42.82 SS G_CDS: -0.11 Total: -42.93 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -88.34 -1.48 -89.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107405647.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.322 kcal (2) G-P(sol) polarization free energy of solvation -88.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.50 seconds