Wall clock time and date at job start Tue Mar 31 2020 22:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46866 * 2 1 4 4 C 1.52998 * 109.47072 * 119.99191 * 2 1 3 5 5 C 1.50702 * 109.47126 * 184.99875 * 4 2 1 6 6 O 1.21280 * 119.99997 * 0.02562 * 5 4 2 7 7 N 1.34774 * 120.00174 * 180.02562 * 5 4 2 8 8 C 1.48119 * 127.84156 * 0.02941 * 7 5 4 9 9 C 1.54331 * 104.69230 * 140.22054 * 8 7 5 10 10 H 1.09001 * 112.59821 * 262.02861 * 9 8 7 11 11 C 1.54169 * 109.65500 * 137.80055 * 9 8 7 12 12 C 1.54843 * 104.32556 * 223.42034 * 11 9 8 13 13 C 1.54840 * 102.73500 * 38.18879 * 12 11 9 14 14 C 1.54166 * 104.32903 * 321.81229 * 13 12 11 15 15 C 1.53005 * 111.81953 * 261.25095 * 14 13 12 16 16 N 1.46505 * 109.46904 * 298.97995 * 15 14 13 17 17 C 1.36931 * 119.99788 * 180.02562 * 16 15 14 18 18 H 1.08002 * 120.00438 * 0.02562 * 17 16 15 19 19 C 1.38817 * 119.99680 * 179.72358 * 17 16 15 20 20 N 1.31614 * 119.99888 * 0.27479 * 19 17 16 21 21 Si 1.86803 * 119.99862 * 180.27671 * 19 17 16 22 22 H 1.48496 * 109.47141 * 59.99751 * 21 19 17 23 23 H 1.48490 * 109.47071 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46993 * 300.00028 * 21 19 17 25 25 C 1.50619 * 127.74573 * 180.30822 * 7 5 4 26 26 N 1.46491 * 109.47155 * 239.99907 * 2 1 3 27 27 C 1.34779 * 120.00726 * 84.99839 * 26 2 1 28 28 N 1.34768 * 120.00498 * 180.02562 * 27 26 2 29 29 O 1.21591 * 119.99389 * 0.02562 * 27 26 2 30 30 H 1.08999 * 109.47211 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47015 * 300.00603 * 1 2 3 32 32 H 1.08996 * 109.47325 * 60.00173 * 1 2 3 33 33 H 1.09007 * 109.46729 * 65.00460 * 4 2 1 34 34 H 1.08997 * 109.47755 * 305.00298 * 4 2 1 35 35 H 1.09005 * 110.39470 * 21.42104 * 8 7 5 36 36 H 1.08994 * 110.49098 * 259.07309 * 8 7 5 37 37 H 1.08999 * 110.46159 * 104.70976 * 11 9 8 38 38 H 1.08999 * 110.56878 * 342.18935 * 11 9 8 39 39 H 1.08994 * 110.75931 * 279.87537 * 12 11 9 40 40 H 1.09005 * 110.91542 * 156.56829 * 12 11 9 41 41 H 1.08998 * 110.46422 * 203.09931 * 13 12 11 42 42 H 1.08999 * 110.46501 * 80.52011 * 13 12 11 43 43 H 1.09003 * 109.46946 * 178.98754 * 15 14 13 44 44 H 1.08993 * 109.47679 * 58.98297 * 15 14 13 45 45 H 0.97000 * 119.99792 * 0.02562 * 16 15 14 46 46 H 0.97005 * 119.99715 * 179.97438 * 20 19 17 47 47 H 1.09004 * 110.78240 * 101.42763 * 25 7 5 48 48 H 1.09001 * 111.15169 * 338.24417 * 25 7 5 49 49 H 0.97007 * 119.99695 * 265.00001 * 26 2 1 50 50 H 0.97000 * 119.99782 * 359.97438 * 28 27 26 51 51 H 0.96998 * 120.00065 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5419 -0.6147 1.3128 6 8 4.1450 -0.0203 0.4445 7 7 4.2150 -1.1802 2.3344 8 6 3.6600 -1.9406 3.4779 9 6 4.6517 -3.1034 3.6930 10 1 4.3176 -4.0304 3.2270 11 6 4.9013 -3.2996 5.2017 12 6 6.4318 -3.5069 5.3129 13 6 6.9878 -2.5163 4.2607 14 6 5.9878 -2.6017 3.0905 15 6 6.4930 -3.5211 1.9767 16 7 7.7515 -2.9948 1.4423 17 6 8.3945 -3.6550 0.4295 18 1 7.9737 -4.5635 0.0243 19 6 9.5839 -3.1532 -0.0808 20 7 10.0964 -2.0459 0.4126 21 14 10.4572 -4.0497 -1.4677 22 1 9.5621 -4.1233 -2.6503 23 1 11.6962 -3.3153 -1.8289 24 1 10.8075 -5.4234 -1.0258 25 6 5.7021 -1.1761 2.5733 26 7 2.0183 -0.6906 -1.1961 27 6 2.1471 -0.0184 -2.3572 28 7 2.5958 -0.6539 -3.4576 29 8 1.8583 1.1615 -2.4117 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.7516 -1.7714 1.2057 34 1 1.6054 -0.2616 2.1370 35 1 2.6701 -2.3260 3.2333 36 1 3.6129 -1.3121 4.3672 37 1 4.3703 -4.1796 5.5645 38 1 4.5951 -2.4143 5.7588 39 1 6.7023 -4.5318 5.0595 40 1 6.7877 -3.2504 6.3108 41 1 7.9817 -2.8237 3.9357 42 1 7.0143 -1.5048 4.6661 43 1 5.7510 -3.5677 1.1795 44 1 6.6585 -4.5209 2.3778 45 1 8.1292 -2.1787 1.8059 46 1 10.9278 -1.6955 0.0562 47 1 5.9704 -0.4372 3.3285 48 1 6.2485 -0.9909 1.6485 49 1 2.2490 -1.6318 -1.1525 50 1 2.8265 -1.5950 -3.4140 51 1 2.6888 -0.1700 -4.2931 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112351153.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:39 Heat of formation + Delta-G solvation = -59.199400 kcal Electronic energy + Delta-G solvation = -31049.690031 eV Core-core repulsion = 26983.764923 eV Total energy + Delta-G solvation = -4065.925108 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.51232 -39.82896 -38.53282 -35.70121 -34.76113 -34.28582 -33.62894 -31.69435 -31.00861 -29.74376 -29.40173 -27.93462 -25.51486 -25.46081 -23.57863 -22.50246 -21.98608 -20.71094 -20.33819 -19.11083 -18.47173 -18.18081 -17.37922 -17.16710 -16.53397 -15.93657 -15.68184 -15.31891 -15.05862 -14.88962 -14.60336 -14.22367 -14.06814 -13.84173 -13.39678 -13.25010 -13.18768 -12.99522 -12.85521 -12.67887 -12.33224 -12.13133 -11.98901 -11.85008 -11.50619 -11.21123 -11.14580 -10.95660 -10.82419 -10.78052 -10.56427 -10.54377 -10.34521 -10.24347 -10.17580 -9.96863 -9.63832 -9.60547 -9.54512 -8.97054 -8.85319 -8.52673 -6.89937 -5.74377 -3.02797 2.79795 2.97275 3.01028 3.39070 3.44803 3.49107 3.50546 4.34149 4.43769 4.48795 4.57927 4.61080 4.71666 4.76678 4.99716 5.14414 5.21265 5.28919 5.30367 5.34093 5.36251 5.41219 5.51251 5.54221 5.58327 5.63711 5.66648 5.78951 5.86859 5.89165 5.93781 6.05202 6.08171 6.15226 6.19126 6.24205 6.41274 6.47340 6.47778 6.55810 6.70576 6.76164 6.76264 6.82959 6.99572 7.70310 7.74515 8.03338 8.35911 8.44182 8.74416 9.55469 10.12585 10.47218 11.48356 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.008025 B = 0.004140 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3488.355150 B = 6762.468826 C = 9634.234992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.176 3.824 3 H 0.096 0.904 4 C -0.146 4.146 5 C 0.524 3.476 6 O -0.521 6.521 7 N -0.626 5.626 8 C 0.109 3.891 9 C -0.098 4.098 10 H 0.087 0.913 11 C -0.115 4.115 12 C -0.121 4.121 13 C -0.115 4.115 14 C -0.074 4.074 15 C 0.176 3.824 16 N -0.728 5.728 17 C -0.240 4.240 18 H 0.067 0.933 19 C -0.011 4.011 20 N -0.931 5.931 21 Si 0.906 3.094 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.287 1.287 25 C 0.117 3.883 26 N -0.729 5.729 27 C 0.714 3.286 28 N -0.869 5.869 29 O -0.600 6.600 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.084 0.916 42 H 0.063 0.937 43 H 0.016 0.984 44 H 0.020 0.980 45 H 0.384 0.616 46 H 0.256 0.744 47 H 0.068 0.932 48 H 0.099 0.901 49 H 0.393 0.607 50 H 0.396 0.604 51 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.021 -2.155 8.071 21.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.070 3.930 3 H 0.114 0.886 4 C -0.187 4.187 5 C 0.312 3.688 6 O -0.396 6.396 7 N -0.362 5.362 8 C -0.014 4.014 9 C -0.117 4.117 10 H 0.106 0.894 11 C -0.153 4.153 12 C -0.159 4.159 13 C -0.153 4.153 14 C -0.076 4.076 15 C 0.048 3.952 16 N -0.373 5.373 17 C -0.371 4.371 18 H 0.085 0.915 19 C -0.207 4.207 20 N -0.580 5.580 21 Si 0.737 3.263 22 H -0.214 1.214 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.004 4.004 26 N -0.384 5.384 27 C 0.413 3.587 28 N -0.436 5.436 29 O -0.479 6.479 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.114 0.886 34 H 0.124 0.876 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.103 0.897 42 H 0.081 0.919 43 H 0.033 0.967 44 H 0.038 0.962 45 H 0.219 0.781 46 H 0.065 0.935 47 H 0.086 0.914 48 H 0.117 0.883 49 H 0.227 0.773 50 H 0.224 0.776 51 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -20.001 -0.861 7.494 21.377 hybrid contribution 0.998 -1.084 -0.885 1.719 sum -19.004 -1.945 6.609 20.214 Atomic orbital electron populations 1.22213 0.95044 1.02045 1.02828 1.20494 0.92957 0.97882 0.81697 0.88599 1.22043 0.93200 1.03310 1.00126 1.20156 0.89261 0.78850 0.80550 1.90814 1.69834 1.41599 1.37358 1.49669 1.08748 1.54258 1.23488 1.22486 0.97187 0.92622 0.89151 1.22710 0.95007 0.97834 0.96190 0.89442 1.22425 0.96957 1.01292 0.94618 1.22473 0.94556 1.00079 0.98773 1.22485 0.99930 0.98953 0.93925 1.22252 0.93991 0.95080 0.96252 1.20492 0.88965 0.93923 0.91802 1.42345 1.22494 1.30076 1.42387 1.19124 1.02717 1.05272 1.10030 0.91454 1.24708 0.98291 0.97662 1.00032 1.69637 1.21579 1.22045 1.44722 0.86293 0.79043 0.78720 0.82262 1.21371 1.21685 1.21339 1.23066 0.79298 0.95617 1.02458 1.44922 1.71379 1.13306 1.08828 1.15830 0.77570 0.84751 0.80584 1.42950 1.73558 1.14930 1.12159 1.90928 1.57856 1.14299 1.84790 0.92509 0.91562 0.91617 0.88630 0.87614 0.90856 0.91073 0.91820 0.91541 0.91401 0.91870 0.89714 0.91871 0.96665 0.96178 0.78145 0.93457 0.91389 0.88301 0.77323 0.77610 0.75611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 9.48 37.16 0.35 -1.07 16 2 C 0.18 2.00 2.13 -67.94 -0.15 1.86 16 3 H 0.10 1.43 7.39 -51.93 -0.38 1.04 16 4 C -0.15 -1.39 4.22 -27.88 -0.12 -1.50 16 5 C 0.52 7.67 7.79 -10.99 -0.09 7.58 16 6 O -0.52 -10.36 15.68 5.56 0.09 -10.27 16 7 N -0.63 -8.55 3.36 -167.31 -0.56 -9.12 16 8 C 0.11 1.05 6.48 -2.45 -0.02 1.03 16 9 C -0.10 -1.08 3.52 -88.30 -0.31 -1.39 16 10 H 0.09 0.96 7.88 -51.93 -0.41 0.55 16 11 C -0.12 -1.07 6.38 -25.15 -0.16 -1.23 16 12 C -0.12 -1.37 6.90 -24.79 -0.17 -1.54 16 13 C -0.12 -1.65 5.68 -25.15 -0.14 -1.79 16 14 C -0.07 -1.12 0.61 -152.19 -0.09 -1.21 16 15 C 0.18 3.43 5.20 -4.04 -0.02 3.41 16 16 N -0.73 -18.04 4.59 -59.90 -0.27 -18.32 16 17 C -0.24 -6.70 9.99 -15.06 -0.15 -6.86 16 18 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 19 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 20 N -0.93 -28.29 13.06 55.49 0.72 -27.57 16 21 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 23 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 C 0.12 1.90 6.08 -1.04 -0.01 1.90 16 26 N -0.73 -8.93 4.22 -58.68 -0.25 -9.18 16 27 C 0.71 10.54 8.80 -86.92 -0.77 9.78 16 28 N -0.87 -9.53 8.88 27.63 0.25 -9.28 16 29 O -0.60 -11.34 16.84 5.29 0.09 -11.25 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.10 0.69 7.95 -51.92 -0.41 0.28 16 34 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.52 7.30 -51.93 -0.38 0.15 16 36 H 0.07 0.60 7.26 -51.93 -0.38 0.22 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.55 7.25 -51.93 -0.38 0.17 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.08 1.49 7.16 -51.93 -0.37 1.12 16 42 H 0.06 0.84 7.19 -51.93 -0.37 0.47 16 43 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.38 10.03 6.60 -40.82 -0.27 9.76 16 46 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 47 H 0.07 1.03 7.20 -51.93 -0.37 0.66 16 48 H 0.10 2.09 6.98 -51.93 -0.36 1.73 16 49 H 0.39 4.04 8.62 -40.82 -0.35 3.69 16 50 H 0.40 3.33 8.84 -40.82 -0.36 2.97 16 51 H 0.41 4.08 8.93 -40.82 -0.36 3.71 16 LS Contribution 402.25 15.07 6.06 6.06 Total: -1.00 -37.28 402.25 -9.35 -46.63 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: -8.52 Total: 16.14 kcal Atomic # 6 Polarization: 10.50 SS G_CDS: -1.93 Total: 8.57 kcal Atomic # 7 Polarization: -73.35 SS G_CDS: -0.12 Total: -73.46 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: 0.18 Total: -21.52 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -37.28 -9.35 -46.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112351153.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.571 kcal (2) G-P(sol) polarization free energy of solvation -37.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds