Wall clock time and date at job start Tue Mar 31 2020 22:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46866 * 2 1 4 4 C 1.52998 * 109.47072 * 119.99191 * 2 1 3 5 5 C 1.50702 * 109.47126 * 184.99875 * 4 2 1 6 6 O 1.21280 * 119.99997 * 0.02562 * 5 4 2 7 7 N 1.34774 * 120.00174 * 180.02562 * 5 4 2 8 8 C 1.48119 * 127.84156 * 0.02941 * 7 5 4 9 9 C 1.54331 * 104.69230 * 140.22054 * 8 7 5 10 10 H 1.09001 * 112.59821 * 262.02861 * 9 8 7 11 11 C 1.54169 * 109.65500 * 137.80055 * 9 8 7 12 12 C 1.54843 * 104.32556 * 223.42034 * 11 9 8 13 13 C 1.54840 * 102.73500 * 38.18879 * 12 11 9 14 14 C 1.54166 * 104.32903 * 321.81229 * 13 12 11 15 15 C 1.53005 * 111.81953 * 261.25095 * 14 13 12 16 16 N 1.46505 * 109.46904 * 298.97995 * 15 14 13 17 17 C 1.36931 * 119.99788 * 180.02562 * 16 15 14 18 18 H 1.08002 * 120.00438 * 0.02562 * 17 16 15 19 19 C 1.38817 * 119.99680 * 179.72358 * 17 16 15 20 20 N 1.31614 * 119.99888 * 0.27479 * 19 17 16 21 21 Si 1.86803 * 119.99862 * 180.27671 * 19 17 16 22 22 H 1.48496 * 109.47141 * 59.99751 * 21 19 17 23 23 H 1.48490 * 109.47071 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46993 * 300.00028 * 21 19 17 25 25 C 1.50619 * 127.74573 * 180.30822 * 7 5 4 26 26 N 1.46491 * 109.47155 * 239.99907 * 2 1 3 27 27 C 1.34779 * 120.00726 * 84.99839 * 26 2 1 28 28 N 1.34768 * 120.00498 * 180.02562 * 27 26 2 29 29 O 1.21591 * 119.99389 * 0.02562 * 27 26 2 30 30 H 1.08999 * 109.47211 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47015 * 300.00603 * 1 2 3 32 32 H 1.08996 * 109.47325 * 60.00173 * 1 2 3 33 33 H 1.09007 * 109.46729 * 65.00460 * 4 2 1 34 34 H 1.08997 * 109.47755 * 305.00298 * 4 2 1 35 35 H 1.09005 * 110.39470 * 21.42104 * 8 7 5 36 36 H 1.08994 * 110.49098 * 259.07309 * 8 7 5 37 37 H 1.08999 * 110.46159 * 104.70976 * 11 9 8 38 38 H 1.08999 * 110.56878 * 342.18935 * 11 9 8 39 39 H 1.08994 * 110.75931 * 279.87537 * 12 11 9 40 40 H 1.09005 * 110.91542 * 156.56829 * 12 11 9 41 41 H 1.08998 * 110.46422 * 203.09931 * 13 12 11 42 42 H 1.08999 * 110.46501 * 80.52011 * 13 12 11 43 43 H 1.09003 * 109.46946 * 178.98754 * 15 14 13 44 44 H 1.08993 * 109.47679 * 58.98297 * 15 14 13 45 45 H 0.97000 * 119.99792 * 0.02562 * 16 15 14 46 46 H 0.97005 * 119.99715 * 179.97438 * 20 19 17 47 47 H 1.09004 * 110.78240 * 101.42763 * 25 7 5 48 48 H 1.09001 * 111.15169 * 338.24417 * 25 7 5 49 49 H 0.97007 * 119.99695 * 265.00001 * 26 2 1 50 50 H 0.97000 * 119.99782 * 359.97438 * 28 27 26 51 51 H 0.96998 * 120.00065 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5419 -0.6147 1.3128 6 8 4.1450 -0.0203 0.4445 7 7 4.2150 -1.1802 2.3344 8 6 3.6600 -1.9406 3.4779 9 6 4.6517 -3.1034 3.6930 10 1 4.3176 -4.0304 3.2270 11 6 4.9013 -3.2996 5.2017 12 6 6.4318 -3.5069 5.3129 13 6 6.9878 -2.5163 4.2607 14 6 5.9878 -2.6017 3.0905 15 6 6.4930 -3.5211 1.9767 16 7 7.7515 -2.9948 1.4423 17 6 8.3945 -3.6550 0.4295 18 1 7.9737 -4.5635 0.0243 19 6 9.5839 -3.1532 -0.0808 20 7 10.0964 -2.0459 0.4126 21 14 10.4572 -4.0497 -1.4677 22 1 9.5621 -4.1233 -2.6503 23 1 11.6962 -3.3153 -1.8289 24 1 10.8075 -5.4234 -1.0258 25 6 5.7021 -1.1761 2.5733 26 7 2.0183 -0.6906 -1.1961 27 6 2.1471 -0.0184 -2.3572 28 7 2.5958 -0.6539 -3.4576 29 8 1.8583 1.1615 -2.4117 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.7516 -1.7714 1.2057 34 1 1.6054 -0.2616 2.1370 35 1 2.6701 -2.3260 3.2333 36 1 3.6129 -1.3121 4.3672 37 1 4.3703 -4.1796 5.5645 38 1 4.5951 -2.4143 5.7588 39 1 6.7023 -4.5318 5.0595 40 1 6.7877 -3.2504 6.3108 41 1 7.9817 -2.8237 3.9357 42 1 7.0143 -1.5048 4.6661 43 1 5.7510 -3.5677 1.1795 44 1 6.6585 -4.5209 2.3778 45 1 8.1292 -2.1787 1.8059 46 1 10.9278 -1.6955 0.0562 47 1 5.9704 -0.4372 3.3285 48 1 6.2485 -0.9909 1.6485 49 1 2.2490 -1.6318 -1.1525 50 1 2.8265 -1.5950 -3.4140 51 1 2.6888 -0.1700 -4.2931 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112351153.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:38 Heat of formation + Delta-G solvation = -89.321579 kcal Electronic energy + Delta-G solvation = -31050.996227 eV Core-core repulsion = 26983.764923 eV Total energy + Delta-G solvation = -4067.231303 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.60149 -40.91989 -39.70295 -36.71498 -36.42695 -35.55672 -34.73623 -33.45784 -32.02096 -31.05338 -30.51850 -28.94318 -27.05305 -26.46471 -25.19091 -23.75695 -23.09956 -21.72764 -21.32477 -20.16305 -19.78478 -19.32771 -19.04465 -18.18102 -17.77069 -16.94363 -16.71058 -16.64457 -16.34985 -16.21776 -15.97900 -15.41307 -15.24144 -15.14923 -14.97270 -14.67326 -14.41531 -14.10056 -13.94640 -13.58512 -13.36977 -13.14615 -13.06395 -12.93828 -12.83874 -12.77785 -12.62330 -12.25677 -12.14924 -11.98148 -11.80641 -11.75680 -11.68882 -11.42675 -11.39659 -11.37262 -11.32055 -10.95070 -10.73999 -10.67520 -9.93170 -9.65431 -9.00131 -7.97022 -5.24955 1.42297 1.45978 1.52060 1.72867 1.96878 1.99748 2.27878 2.53143 3.34951 3.37443 3.49511 3.62021 3.69695 3.72620 3.81004 4.19102 4.22261 4.22741 4.31562 4.37511 4.42490 4.47518 4.52510 4.57840 4.62858 4.69196 4.78487 4.79360 4.86112 4.91218 4.94508 5.02391 5.07020 5.08333 5.13820 5.23909 5.28314 5.34238 5.36647 5.43246 5.48327 5.52280 5.61527 5.62485 5.87434 6.03865 6.24708 6.70836 7.08951 7.27328 7.31199 7.68217 8.08663 8.31039 9.26439 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.008025 B = 0.004140 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3488.355150 B = 6762.468826 C = 9634.234992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.170 3.830 3 H 0.051 0.949 4 C -0.128 4.128 5 C 0.513 3.487 6 O -0.590 6.590 7 N -0.625 5.625 8 C 0.108 3.892 9 C -0.091 4.091 10 H 0.094 0.906 11 C -0.102 4.102 12 C -0.117 4.117 13 C -0.116 4.116 14 C -0.070 4.070 15 C 0.178 3.822 16 N -0.739 5.739 17 C -0.245 4.245 18 H 0.073 0.927 19 C -0.074 4.074 20 N -0.969 5.969 21 Si 0.972 3.028 22 H -0.281 1.281 23 H -0.296 1.296 24 H -0.273 1.273 25 C 0.117 3.883 26 N -0.722 5.722 27 C 0.701 3.299 28 N -0.855 5.855 29 O -0.650 6.650 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.038 0.962 33 H 0.134 0.866 34 H 0.145 0.855 35 H 0.115 0.885 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.057 0.943 40 H 0.079 0.921 41 H 0.040 0.960 42 H 0.071 0.929 43 H 0.003 0.997 44 H 0.023 0.977 45 H 0.373 0.627 46 H 0.250 0.750 47 H 0.076 0.924 48 H 0.037 0.963 49 H 0.404 0.596 50 H 0.410 0.590 51 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.290 -4.556 10.514 25.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.064 3.936 3 H 0.069 0.931 4 C -0.168 4.168 5 C 0.304 3.696 6 O -0.469 6.469 7 N -0.359 5.359 8 C -0.013 4.013 9 C -0.110 4.110 10 H 0.112 0.888 11 C -0.139 4.139 12 C -0.155 4.155 13 C -0.154 4.154 14 C -0.071 4.071 15 C 0.051 3.949 16 N -0.382 5.382 17 C -0.377 4.377 18 H 0.091 0.909 19 C -0.267 4.267 20 N -0.620 5.620 21 Si 0.800 3.200 22 H -0.207 1.207 23 H -0.222 1.222 24 H -0.199 1.199 25 C -0.006 4.006 26 N -0.377 5.377 27 C 0.399 3.601 28 N -0.423 5.423 29 O -0.533 6.533 30 H 0.101 0.899 31 H 0.108 0.892 32 H 0.057 0.943 33 H 0.152 0.848 34 H 0.163 0.837 35 H 0.134 0.866 36 H 0.114 0.886 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.076 0.924 40 H 0.098 0.902 41 H 0.059 0.941 42 H 0.089 0.911 43 H 0.021 0.979 44 H 0.041 0.959 45 H 0.205 0.795 46 H 0.059 0.941 47 H 0.094 0.906 48 H 0.056 0.944 49 H 0.239 0.761 50 H 0.240 0.760 51 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -23.318 -3.370 9.987 25.590 hybrid contribution 2.058 -0.355 -1.637 2.653 sum -21.260 -3.726 8.350 23.143 Atomic orbital electron populations 1.22110 0.92400 1.03647 1.02739 1.20602 0.94841 0.95894 0.82278 0.93100 1.22074 0.88641 1.05657 1.00384 1.21204 0.91375 0.77523 0.79515 1.90795 1.71582 1.44586 1.39980 1.49792 1.07413 1.54141 1.24507 1.22841 0.98308 0.91791 0.88357 1.22740 0.92341 0.98602 0.97359 0.88779 1.22404 0.94915 1.03525 0.93100 1.22459 0.96483 0.98311 0.98245 1.22436 0.97672 1.00410 0.94864 1.22131 0.96710 0.93340 0.94903 1.20602 0.86491 0.94969 0.92817 1.42547 1.24083 1.29594 1.41982 1.19566 1.02744 1.05218 1.10207 0.90921 1.25545 0.99468 0.98745 1.02898 1.69815 1.21873 1.23874 1.46424 0.85242 0.77493 0.77906 0.79329 1.20726 1.22227 1.19908 1.22817 0.81283 0.96819 0.99636 1.44935 1.70674 1.13693 1.08429 1.16188 0.77656 0.84427 0.81801 1.42823 1.72411 1.15582 1.11523 1.90882 1.60116 1.16552 1.85702 0.89910 0.89160 0.94257 0.84812 0.83739 0.86646 0.88581 0.89192 0.89397 0.92432 0.90212 0.94098 0.91078 0.97888 0.95915 0.79451 0.94127 0.90584 0.94406 0.76097 0.75985 0.75067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.48 71.98 0.68 -1.56 16 2 C 0.17 3.68 2.13 44.99 0.10 3.78 16 3 H 0.05 1.58 7.39 -2.38 -0.02 1.57 16 4 C -0.13 -1.96 4.22 29.85 0.13 -1.83 16 5 C 0.51 14.53 7.79 87.66 0.68 15.22 16 6 O -0.59 -24.63 15.68 -3.03 -0.05 -24.67 16 7 N -0.62 -15.95 3.36 -801.65 -2.70 -18.65 16 8 C 0.11 1.53 6.48 86.52 0.56 2.09 16 9 C -0.09 -1.64 3.52 -9.29 -0.03 -1.67 16 10 H 0.09 1.64 7.88 -2.39 -0.02 1.62 16 11 C -0.10 -1.36 6.38 31.62 0.20 -1.16 16 12 C -0.12 -2.35 6.90 31.85 0.22 -2.13 16 13 C -0.12 -3.31 5.68 31.62 0.18 -3.13 16 14 C -0.07 -2.05 0.61 -50.68 -0.03 -2.08 16 15 C 0.18 7.10 5.20 86.38 0.45 7.55 16 16 N -0.74 -38.53 4.59 -343.44 -1.58 -40.11 16 17 C -0.25 -14.14 9.99 84.04 0.84 -13.31 16 18 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 19 C -0.07 -4.41 5.50 84.86 0.47 -3.95 16 20 N -0.97 -61.58 13.06 21.65 0.28 -61.29 16 21 Si 0.97 47.58 29.55 68.60 2.03 49.61 16 22 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 23 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 24 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 25 C 0.12 3.92 6.08 86.02 0.52 4.44 16 26 N -0.72 -17.50 4.22 -457.82 -1.93 -19.43 16 27 C 0.70 21.42 8.80 179.06 1.58 22.99 16 28 N -0.86 -19.13 8.88 -184.75 -1.64 -20.77 16 29 O -0.65 -25.96 16.84 -4.00 -0.07 -26.03 16 30 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.13 1.11 7.95 -2.38 -0.02 1.10 16 34 H 0.14 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.12 0.77 7.30 -2.38 -0.02 0.75 16 36 H 0.10 0.99 7.26 -2.39 -0.02 0.97 16 37 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.09 0.88 7.25 -2.39 -0.02 0.86 16 39 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 41 H 0.04 1.51 7.16 -2.39 -0.02 1.50 16 42 H 0.07 1.88 7.19 -2.39 -0.02 1.86 16 43 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 44 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.37 20.90 6.60 -92.71 -0.61 20.29 16 46 H 0.25 15.47 8.31 -92.70 -0.77 14.70 16 47 H 0.08 2.36 7.20 -2.38 -0.02 2.34 16 48 H 0.04 1.73 6.98 -2.39 -0.02 1.71 16 49 H 0.40 7.81 8.62 -92.70 -0.80 7.02 16 50 H 0.41 6.77 8.84 -92.71 -0.82 5.95 16 51 H 0.42 8.50 8.93 -92.71 -0.83 7.67 16 Total: -1.00 -91.49 402.25 -1.19 -92.68 By element: Atomic # 1 Polarization: 45.51 SS G_CDS: -2.08 Total: 43.43 kcal Atomic # 6 Polarization: 18.70 SS G_CDS: 6.54 Total: 25.24 kcal Atomic # 7 Polarization: -152.69 SS G_CDS: -7.56 Total: -160.25 kcal Atomic # 8 Polarization: -50.59 SS G_CDS: -0.11 Total: -50.70 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 2.03 Total: 49.61 kcal Total: -91.49 -1.19 -92.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112351153.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.357 kcal (2) G-P(sol) polarization free energy of solvation -91.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds