Wall clock time and date at job start Tue Mar 31 2020 21:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.90679 * 2 1 4 4 C 1.53995 * 109.91833 * 121.10385 * 2 1 3 5 5 C 1.54597 * 105.14093 * 120.77445 * 4 2 1 6 6 C 1.54936 * 102.91936 * 21.95570 * 5 4 2 7 7 N 1.47900 * 109.91499 * 238.89855 * 2 1 3 8 8 C 1.46893 * 111.00241 * 94.60623 * 7 2 1 9 9 C 1.50700 * 109.47577 * 169.99749 * 8 7 2 10 10 O 1.21280 * 119.99789 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00133 * 180.02562 * 9 8 7 12 12 C 1.47078 * 120.88149 * 359.71829 * 11 9 8 13 13 C 1.53704 * 108.27270 * 128.75874 * 12 11 9 14 14 N 1.46900 * 109.25716 * 54.08327 * 13 12 11 15 15 C 1.46904 * 110.99854 * 172.60733 * 14 13 12 16 16 C 1.50699 * 109.46951 * 294.30267 * 15 14 13 17 17 O 1.21290 * 120.00344 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99638 * 180.02562 * 16 15 14 19 19 C 1.37095 * 119.99915 * 180.02562 * 18 16 15 20 20 H 1.08009 * 119.99796 * 359.97438 * 19 18 16 21 21 C 1.38943 * 120.00235 * 180.02562 * 19 18 16 22 22 N 1.31414 * 120.00022 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00426 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46995 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47152 * 119.99361 * 23 21 19 26 26 H 1.48497 * 109.47491 * 239.99748 * 23 21 19 27 27 C 1.46897 * 111.27046 * 296.75508 * 14 13 12 28 28 C 1.47080 * 120.88035 * 180.02562 * 11 9 8 29 29 H 1.09008 * 109.47147 * 300.69673 * 1 2 3 30 30 H 1.08999 * 109.47412 * 60.69887 * 1 2 3 31 31 H 1.09000 * 109.47313 * 180.70382 * 1 2 3 32 32 H 1.09000 * 110.30928 * 239.69147 * 4 2 1 33 33 H 1.08995 * 110.30765 * 1.85877 * 4 2 1 34 34 H 1.08989 * 110.72529 * 140.31525 * 5 4 2 35 35 H 1.09000 * 110.72281 * 263.60358 * 5 4 2 36 36 H 1.09005 * 110.66538 * 81.02346 * 6 5 4 37 37 H 1.09000 * 110.66444 * 203.98638 * 6 5 4 38 38 H 1.09005 * 109.47157 * 290.00390 * 8 7 2 39 39 H 1.09003 * 109.47284 * 49.99946 * 8 7 2 40 40 H 1.08998 * 109.63506 * 248.52577 * 12 11 9 41 41 H 1.08997 * 109.63099 * 9.10949 * 12 11 9 42 42 H 1.09001 * 109.64183 * 294.07824 * 13 12 11 43 43 H 1.09000 * 109.41632 * 173.94949 * 13 12 11 44 44 H 1.09004 * 109.46818 * 54.29863 * 15 14 13 45 45 H 1.08996 * 109.46700 * 174.30090 * 15 14 13 46 46 H 0.96997 * 119.99920 * 359.97438 * 18 16 15 47 47 H 0.96998 * 120.00333 * 179.97438 * 22 21 19 48 48 H 1.09000 * 109.49576 * 303.14843 * 27 14 13 49 49 H 1.08993 * 109.51613 * 183.07916 * 27 14 13 50 50 H 1.09004 * 109.62994 * 350.89918 * 28 11 9 51 51 H 1.09002 * 109.62848 * 111.47162 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9011 1.0249 0.0000 4 6 2.0546 -0.7479 1.2397 5 6 2.9101 -1.9075 0.6797 6 6 3.2732 -1.4141 -0.7434 7 7 2.0338 -0.7183 -1.1907 8 6 2.3167 0.2158 -2.2885 9 6 3.0517 -0.5078 -3.3871 10 8 3.3138 -1.6860 -3.2676 11 7 3.4180 0.1541 -4.5025 12 6 3.1048 1.5813 -4.6704 13 6 4.3984 2.3165 -5.0558 14 7 4.9916 1.6686 -6.2332 15 6 6.1325 2.4423 -6.7410 16 6 5.6471 3.7711 -7.2602 17 8 4.4669 4.0468 -7.2116 18 7 6.5244 4.6532 -7.7786 19 6 6.0829 5.8623 -8.2505 20 1 5.0320 6.1077 -8.2072 21 6 6.9872 6.7715 -8.7854 22 7 8.2658 6.4726 -8.8385 23 14 6.3857 8.4186 -9.4291 24 1 4.9135 8.5098 -9.2564 25 1 7.0421 9.5152 -8.6729 26 1 6.7230 8.5402 -10.8701 27 6 5.3838 0.2840 -5.9385 28 6 4.1356 -0.5331 -5.5869 29 1 -0.3634 0.5247 0.8837 30 1 -0.3634 0.5029 -0.8962 31 1 -0.3634 -1.0276 0.0126 32 1 2.6685 -0.0853 1.8497 33 1 1.2230 -1.1399 1.8251 34 1 3.8087 -2.0487 1.2800 35 1 2.3282 -2.8280 0.6319 36 1 4.1129 -0.7200 -0.7073 37 1 3.5002 -2.2569 -1.3965 38 1 1.3793 0.6126 -2.6785 39 1 2.9322 1.0357 -1.9184 40 1 2.3622 1.7030 -5.4590 41 1 2.7182 1.9840 -3.7343 42 1 5.1033 2.2775 -4.2253 43 1 4.1685 3.3560 -5.2897 44 1 6.8477 2.6065 -5.9349 45 1 6.6148 1.8910 -7.5481 46 1 7.4682 4.4328 -7.8171 47 1 8.8971 7.1071 -9.2123 48 1 6.0751 0.2732 -5.0958 49 1 5.8689 -0.1509 -6.8123 50 1 4.4307 -1.5292 -5.2570 51 1 3.4899 -0.6106 -6.4617 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113344056.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:19 Heat of formation + Delta-G solvation = -43.326419 kcal Electronic energy + Delta-G solvation = -30026.166558 eV Core-core repulsion = 25960.929754 eV Total energy + Delta-G solvation = -4065.236804 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.56975 -39.24395 -38.40880 -37.18333 -34.56321 -33.82988 -32.74215 -31.50802 -31.30921 -31.05872 -29.02504 -27.01012 -25.75661 -25.33975 -23.86821 -23.56858 -21.70640 -21.03325 -20.33853 -19.33174 -18.92529 -17.92457 -17.15089 -16.67427 -16.10647 -15.85215 -15.45889 -15.41063 -15.10863 -14.84220 -14.64817 -14.49463 -14.18689 -13.99289 -13.68923 -13.65949 -13.45763 -13.31653 -12.85966 -12.64507 -12.40711 -12.28586 -12.04971 -11.92341 -11.66980 -11.62509 -11.56541 -11.39119 -11.27493 -11.18152 -11.07843 -10.94482 -10.86372 -10.82339 -10.38044 -10.27130 -9.66581 -9.53320 -8.89617 -8.66260 -8.40900 -8.03675 -7.94172 -6.46491 -3.87502 2.51797 2.77338 3.12647 3.23801 3.30413 3.70152 3.83164 3.89814 4.18568 4.25564 4.33039 4.57429 4.67260 4.81566 4.94240 4.95283 4.98287 5.03835 5.09806 5.14633 5.19167 5.20295 5.24590 5.31057 5.37382 5.40771 5.45740 5.49922 5.56422 5.63726 5.69158 5.75461 5.78115 5.82115 5.85753 5.91719 5.96566 6.06881 6.08729 6.14758 6.20481 6.45110 6.63614 6.71206 7.09603 7.25618 7.36289 7.50790 8.01281 8.09660 8.55990 9.13023 9.49011 9.99952 10.71163 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.020386 B = 0.002075 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.129051 B =13488.299004 C =14157.643491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.058 3.942 3 H 0.052 0.948 4 C -0.127 4.127 5 C -0.125 4.125 6 C 0.033 3.967 7 N -0.497 5.497 8 C 0.028 3.972 9 C 0.517 3.483 10 O -0.533 6.533 11 N -0.612 5.612 12 C 0.114 3.886 13 C 0.039 3.961 14 N -0.514 5.514 15 C 0.046 3.954 16 C 0.443 3.557 17 O -0.579 6.579 18 N -0.563 5.563 19 C -0.298 4.298 20 H 0.104 0.896 21 C 0.022 3.978 22 N -0.901 5.901 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.281 1.281 27 C 0.041 3.959 28 C 0.120 3.880 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.036 0.964 37 H 0.111 0.889 38 H 0.105 0.895 39 H 0.064 0.936 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.026 0.974 43 H 0.116 0.884 44 H 0.047 0.953 45 H 0.090 0.910 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.034 0.966 49 H 0.087 0.913 50 H 0.093 0.907 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.202 -13.778 16.473 22.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.050 4.050 3 H 0.070 0.930 4 C -0.165 4.165 5 C -0.164 4.164 6 C -0.094 4.094 7 N -0.222 5.222 8 C -0.103 4.103 9 C 0.305 3.695 10 O -0.410 6.410 11 N -0.347 5.347 12 C -0.009 4.009 13 C -0.089 4.089 14 N -0.239 5.239 15 C -0.085 4.085 16 C 0.228 3.772 17 O -0.463 6.463 18 N -0.199 5.199 19 C -0.428 4.428 20 H 0.122 0.878 21 C -0.180 4.180 22 N -0.542 5.542 23 Si 0.757 3.243 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.207 1.207 27 C -0.088 4.088 28 C -0.002 4.002 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.054 0.946 37 H 0.129 0.871 38 H 0.123 0.877 39 H 0.082 0.918 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.044 0.956 43 H 0.134 0.866 44 H 0.065 0.935 45 H 0.109 0.891 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.052 0.948 49 H 0.105 0.895 50 H 0.111 0.889 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.444 -14.473 15.922 23.498 hybrid contribution 1.745 1.605 0.360 2.398 sum -7.699 -12.868 16.282 22.135 Atomic orbital electron populations 1.21754 0.93746 1.02429 1.01307 1.22471 0.96562 0.96155 0.89845 0.93002 1.22471 0.99866 0.97457 0.96729 1.22512 0.99530 0.98512 0.95798 1.23562 0.90168 0.99836 0.95874 1.64779 1.27485 1.24725 1.05169 1.22244 1.00912 0.94633 0.92482 1.20414 0.79058 0.87305 0.82757 1.90612 1.55689 1.15723 1.79010 1.48260 1.57209 1.11331 1.17872 1.22018 0.98151 0.78808 1.01905 1.22723 0.94536 1.01322 0.90346 1.61496 1.29767 1.00767 1.31870 1.21855 0.91747 0.95155 0.99716 1.19706 0.87064 0.85737 0.84651 1.90473 1.16603 1.78413 1.60820 1.41887 1.09374 1.15127 1.53560 1.19740 0.95546 0.91432 1.36077 0.87807 1.25276 0.94979 1.00105 0.97637 1.69618 1.01589 1.37091 1.45918 0.85800 0.79083 0.81151 0.78311 1.19197 1.20775 1.20732 1.22516 0.96125 0.89814 1.00349 1.21687 0.93002 0.96111 0.89440 0.92464 0.92673 0.91862 0.91610 0.90817 0.91249 0.90750 0.94592 0.87094 0.87680 0.91831 0.89764 0.89953 0.95580 0.86598 0.93483 0.89149 0.77484 0.91885 0.94820 0.89478 0.88863 0.90561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.01 9.32 37.16 0.35 -0.67 16 2 C 0.06 0.49 3.07 -66.64 -0.20 0.29 16 3 H 0.05 0.43 7.57 -51.93 -0.39 0.03 16 4 C -0.13 -0.95 6.57 -25.37 -0.17 -1.12 16 5 C -0.13 -1.06 7.06 -24.87 -0.18 -1.23 16 6 C 0.03 0.35 5.32 -1.63 -0.01 0.34 16 7 N -0.50 -5.29 4.90 -223.59 -1.10 -6.39 16 8 C 0.03 0.29 3.89 -4.98 -0.02 0.27 16 9 C 0.52 6.60 7.42 -10.99 -0.08 6.51 16 10 O -0.53 -8.16 13.00 5.56 0.07 -8.09 16 11 N -0.61 -7.59 3.00 -172.15 -0.52 -8.11 16 12 C 0.11 1.37 6.53 -3.36 -0.02 1.35 16 13 C 0.04 0.58 5.27 -3.46 -0.02 0.56 16 14 N -0.51 -8.03 4.37 -235.44 -1.03 -9.06 16 15 C 0.05 0.79 5.45 -4.97 -0.03 0.76 16 16 C 0.44 9.92 7.44 -10.98 -0.08 9.84 16 17 O -0.58 -14.63 13.91 5.55 0.08 -14.55 16 18 N -0.56 -13.77 5.29 -10.96 -0.06 -13.82 16 19 C -0.30 -8.06 9.68 -14.94 -0.14 -8.21 16 20 H 0.10 2.94 7.16 -52.48 -0.38 2.56 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 22 N -0.90 -24.04 13.05 55.50 0.72 -23.32 16 23 Si 0.93 20.59 29.55 -169.99 -5.02 15.56 16 24 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 25 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 27 C 0.04 0.52 5.62 -3.68 -0.02 0.49 16 28 C 0.12 1.47 6.60 -3.58 -0.02 1.45 16 29 H 0.06 0.35 8.14 -51.92 -0.42 -0.07 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.49 7.69 -51.93 -0.40 0.09 16 34 H 0.07 0.50 8.14 -51.94 -0.42 0.08 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.04 0.39 8.03 -51.93 -0.42 -0.02 16 37 H 0.11 1.44 6.00 -51.93 -0.31 1.13 16 38 H 0.11 0.95 7.99 -51.93 -0.41 0.54 16 39 H 0.06 0.59 7.34 -51.93 -0.38 0.21 16 40 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.08 0.78 6.02 -51.93 -0.31 0.47 16 42 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.12 2.06 5.76 -51.93 -0.30 1.76 16 44 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 45 H 0.09 1.39 7.97 -51.93 -0.41 0.97 16 46 H 0.39 9.22 7.90 -40.82 -0.32 8.89 16 47 H 0.27 6.84 8.31 -40.82 -0.34 6.51 16 48 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 49 H 0.09 0.98 7.99 -51.93 -0.41 0.56 16 50 H 0.09 1.14 7.06 -51.93 -0.37 0.77 16 51 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 395.47 15.07 5.96 5.96 Total: -1.00 -31.23 395.47 -10.24 -41.47 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -8.61 Total: 9.22 kcal Atomic # 6 Polarization: 11.87 SS G_CDS: -0.74 Total: 11.12 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: -1.98 Total: -60.70 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: 0.15 Total: -22.64 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.23 -10.24 -41.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113344056.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.854 kcal (2) G-P(sol) polarization free energy of solvation -31.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds