Wall clock time and date at job start Tue Mar 31 2020 21:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.90679 * 2 1 4 4 C 1.53995 * 109.91833 * 121.10385 * 2 1 3 5 5 C 1.54597 * 105.14093 * 120.77445 * 4 2 1 6 6 C 1.54936 * 102.91936 * 21.95570 * 5 4 2 7 7 N 1.47900 * 109.91499 * 238.89855 * 2 1 3 8 8 C 1.46893 * 111.00241 * 94.60623 * 7 2 1 9 9 C 1.50700 * 109.47577 * 169.99749 * 8 7 2 10 10 O 1.21280 * 119.99789 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00133 * 180.02562 * 9 8 7 12 12 C 1.47078 * 120.88149 * 359.71829 * 11 9 8 13 13 C 1.53704 * 108.27270 * 128.75874 * 12 11 9 14 14 N 1.46900 * 109.25716 * 54.08327 * 13 12 11 15 15 C 1.46904 * 110.99854 * 172.60733 * 14 13 12 16 16 C 1.50699 * 109.46951 * 294.30267 * 15 14 13 17 17 O 1.21290 * 120.00344 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99638 * 180.02562 * 16 15 14 19 19 C 1.37095 * 119.99915 * 180.02562 * 18 16 15 20 20 H 1.08009 * 119.99796 * 359.97438 * 19 18 16 21 21 C 1.38943 * 120.00235 * 180.02562 * 19 18 16 22 22 N 1.31414 * 120.00022 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00426 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46995 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47152 * 119.99361 * 23 21 19 26 26 H 1.48497 * 109.47491 * 239.99748 * 23 21 19 27 27 C 1.46897 * 111.27046 * 296.75508 * 14 13 12 28 28 C 1.47080 * 120.88035 * 180.02562 * 11 9 8 29 29 H 1.09008 * 109.47147 * 300.69673 * 1 2 3 30 30 H 1.08999 * 109.47412 * 60.69887 * 1 2 3 31 31 H 1.09000 * 109.47313 * 180.70382 * 1 2 3 32 32 H 1.09000 * 110.30928 * 239.69147 * 4 2 1 33 33 H 1.08995 * 110.30765 * 1.85877 * 4 2 1 34 34 H 1.08989 * 110.72529 * 140.31525 * 5 4 2 35 35 H 1.09000 * 110.72281 * 263.60358 * 5 4 2 36 36 H 1.09005 * 110.66538 * 81.02346 * 6 5 4 37 37 H 1.09000 * 110.66444 * 203.98638 * 6 5 4 38 38 H 1.09005 * 109.47157 * 290.00390 * 8 7 2 39 39 H 1.09003 * 109.47284 * 49.99946 * 8 7 2 40 40 H 1.08998 * 109.63506 * 248.52577 * 12 11 9 41 41 H 1.08997 * 109.63099 * 9.10949 * 12 11 9 42 42 H 1.09001 * 109.64183 * 294.07824 * 13 12 11 43 43 H 1.09000 * 109.41632 * 173.94949 * 13 12 11 44 44 H 1.09004 * 109.46818 * 54.29863 * 15 14 13 45 45 H 1.08996 * 109.46700 * 174.30090 * 15 14 13 46 46 H 0.96997 * 119.99920 * 359.97438 * 18 16 15 47 47 H 0.96998 * 120.00333 * 179.97438 * 22 21 19 48 48 H 1.09000 * 109.49576 * 303.14843 * 27 14 13 49 49 H 1.08993 * 109.51613 * 183.07916 * 27 14 13 50 50 H 1.09004 * 109.62994 * 350.89918 * 28 11 9 51 51 H 1.09002 * 109.62848 * 111.47162 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9011 1.0249 0.0000 4 6 2.0546 -0.7479 1.2397 5 6 2.9101 -1.9075 0.6797 6 6 3.2732 -1.4141 -0.7434 7 7 2.0338 -0.7183 -1.1907 8 6 2.3167 0.2158 -2.2885 9 6 3.0517 -0.5078 -3.3871 10 8 3.3138 -1.6860 -3.2676 11 7 3.4180 0.1541 -4.5025 12 6 3.1048 1.5813 -4.6704 13 6 4.3984 2.3165 -5.0558 14 7 4.9916 1.6686 -6.2332 15 6 6.1325 2.4423 -6.7410 16 6 5.6471 3.7711 -7.2602 17 8 4.4669 4.0468 -7.2116 18 7 6.5244 4.6532 -7.7786 19 6 6.0829 5.8623 -8.2505 20 1 5.0320 6.1077 -8.2072 21 6 6.9872 6.7715 -8.7854 22 7 8.2658 6.4726 -8.8385 23 14 6.3857 8.4186 -9.4291 24 1 4.9135 8.5098 -9.2564 25 1 7.0421 9.5152 -8.6729 26 1 6.7230 8.5402 -10.8701 27 6 5.3838 0.2840 -5.9385 28 6 4.1356 -0.5331 -5.5869 29 1 -0.3634 0.5247 0.8837 30 1 -0.3634 0.5029 -0.8962 31 1 -0.3634 -1.0276 0.0126 32 1 2.6685 -0.0853 1.8497 33 1 1.2230 -1.1399 1.8251 34 1 3.8087 -2.0487 1.2800 35 1 2.3282 -2.8280 0.6319 36 1 4.1129 -0.7200 -0.7073 37 1 3.5002 -2.2569 -1.3965 38 1 1.3793 0.6126 -2.6785 39 1 2.9322 1.0357 -1.9184 40 1 2.3622 1.7030 -5.4590 41 1 2.7182 1.9840 -3.7343 42 1 5.1033 2.2775 -4.2253 43 1 4.1685 3.3560 -5.2897 44 1 6.8477 2.6065 -5.9349 45 1 6.6148 1.8910 -7.5481 46 1 7.4682 4.4328 -7.8171 47 1 8.8971 7.1071 -9.2123 48 1 6.0751 0.2732 -5.0958 49 1 5.8689 -0.1509 -6.8123 50 1 4.4307 -1.5292 -5.2570 51 1 3.4899 -0.6106 -6.4617 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113344056.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:18 Heat of formation + Delta-G solvation = -66.158767 kcal Electronic energy + Delta-G solvation = -30027.156642 eV Core-core repulsion = 25960.929754 eV Total energy + Delta-G solvation = -4066.226888 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.55025 -40.46790 -39.62909 -38.45379 -36.06111 -35.43511 -33.53973 -33.25776 -32.17239 -32.07277 -30.29365 -28.06712 -26.99600 -26.26413 -25.34292 -24.63618 -22.59066 -21.95780 -21.07886 -20.99383 -20.01222 -19.81409 -18.14869 -17.80435 -17.45972 -16.78569 -16.62602 -16.40149 -16.37924 -16.21422 -15.98498 -15.51086 -15.40194 -15.29932 -15.22483 -14.71219 -14.42646 -14.16139 -14.01873 -13.69768 -13.52781 -13.27481 -13.24187 -13.00565 -12.95035 -12.79982 -12.61267 -12.41286 -12.38064 -12.37041 -12.29853 -12.17460 -12.09788 -11.87410 -11.60123 -11.44423 -11.43876 -10.64664 -10.33843 -9.99292 -9.77950 -9.43248 -9.23056 -8.45346 -5.93476 1.37283 1.43007 1.53340 1.56640 1.81931 2.06617 2.28749 2.70973 2.94886 3.21831 3.35753 3.38196 3.67238 3.83113 3.90184 3.98135 4.04393 4.12993 4.15500 4.24425 4.25618 4.27954 4.34082 4.43176 4.46726 4.49628 4.51780 4.57981 4.59548 4.71700 4.77616 4.81761 4.87661 4.91775 4.96152 5.03198 5.03690 5.14457 5.21697 5.28946 5.41389 5.42944 5.44161 5.79776 5.87540 5.99412 6.04488 6.12569 6.37089 6.61750 7.11038 7.14656 7.58380 8.13239 8.72240 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.020386 B = 0.002075 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.129051 B =13488.299004 C =14157.643491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.054 3.946 3 H 0.058 0.942 4 C -0.124 4.124 5 C -0.122 4.122 6 C 0.034 3.966 7 N -0.512 5.512 8 C 0.031 3.969 9 C 0.514 3.486 10 O -0.562 6.562 11 N -0.612 5.612 12 C 0.123 3.877 13 C 0.042 3.958 14 N -0.531 5.531 15 C 0.058 3.942 16 C 0.444 3.556 17 O -0.610 6.610 18 N -0.576 5.576 19 C -0.327 4.327 20 H 0.081 0.919 21 C -0.016 4.016 22 N -0.922 5.922 23 Si 0.992 3.008 24 H -0.272 1.272 25 H -0.272 1.272 26 H -0.273 1.273 27 C 0.047 3.953 28 C 0.121 3.879 29 H 0.073 0.927 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.031 0.969 37 H 0.084 0.916 38 H 0.119 0.881 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.110 0.890 42 H 0.033 0.967 43 H 0.083 0.917 44 H 0.064 0.936 45 H 0.112 0.888 46 H 0.395 0.605 47 H 0.276 0.724 48 H 0.037 0.963 49 H 0.104 0.896 50 H 0.094 0.906 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.427 -13.751 17.611 23.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.053 4.053 3 H 0.076 0.924 4 C -0.162 4.162 5 C -0.160 4.160 6 C -0.093 4.093 7 N -0.237 5.237 8 C -0.100 4.100 9 C 0.304 3.696 10 O -0.440 6.440 11 N -0.346 5.346 12 C 0.000 4.000 13 C -0.087 4.087 14 N -0.256 5.256 15 C -0.073 4.073 16 C 0.231 3.769 17 O -0.495 6.495 18 N -0.213 5.213 19 C -0.457 4.457 20 H 0.099 0.901 21 C -0.215 4.215 22 N -0.563 5.563 23 Si 0.816 3.184 24 H -0.196 1.196 25 H -0.198 1.198 26 H -0.199 1.199 27 C -0.081 4.081 28 C -0.002 4.002 29 H 0.092 0.908 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.049 0.951 37 H 0.102 0.898 38 H 0.137 0.863 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.128 0.872 42 H 0.051 0.949 43 H 0.102 0.898 44 H 0.082 0.918 45 H 0.130 0.870 46 H 0.229 0.771 47 H 0.086 0.914 48 H 0.055 0.945 49 H 0.122 0.878 50 H 0.112 0.888 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.663 -14.460 17.068 24.368 hybrid contribution 1.782 1.521 0.022 2.343 sum -7.881 -12.938 17.090 22.838 Atomic orbital electron populations 1.21737 0.93045 1.02113 1.01997 1.22580 0.97089 0.96336 0.89334 0.92397 1.22484 1.00151 0.97054 0.96464 1.22493 1.00214 0.98710 0.94598 1.23429 0.90297 0.98907 0.96712 1.64778 1.27384 1.25466 1.06113 1.22276 1.01415 0.94560 0.91741 1.20871 0.78665 0.87058 0.83050 1.90614 1.56835 1.17054 1.79544 1.48312 1.57060 1.11342 1.17886 1.21954 0.96523 0.78452 1.03047 1.22615 0.95915 0.99884 0.90269 1.61478 1.29505 1.01966 1.32636 1.21722 0.92377 0.92335 1.00828 1.20673 0.86397 0.86981 0.82851 1.90455 1.18115 1.79460 1.61519 1.41957 1.09781 1.15082 1.54489 1.19683 0.94855 0.93213 1.37908 0.90079 1.26029 0.95077 1.02998 0.97395 1.69679 1.02239 1.38207 1.46211 0.84884 0.78271 0.77266 0.78015 1.19618 1.19764 1.19886 1.22536 0.96366 0.87896 1.01274 1.21674 0.92924 0.96096 0.89466 0.90817 0.92935 0.92677 0.90540 0.89782 0.90088 0.91163 0.95084 0.89780 0.86272 0.90496 0.90553 0.87188 0.94870 0.89845 0.91777 0.87035 0.77127 0.91425 0.94454 0.87756 0.88776 0.90622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.71 9.32 71.98 0.67 -1.04 16 2 C 0.05 0.82 3.07 45.06 0.14 0.96 16 3 H 0.06 0.81 7.57 -2.39 -0.02 0.79 16 4 C -0.12 -1.58 6.57 31.47 0.21 -1.38 16 5 C -0.12 -1.90 7.06 31.80 0.22 -1.68 16 6 C 0.03 0.71 5.32 86.55 0.46 1.17 16 7 N -0.51 -10.29 4.90 -861.29 -4.22 -14.51 16 8 C 0.03 0.59 3.89 85.56 0.33 0.92 16 9 C 0.51 12.63 7.42 87.66 0.65 13.28 16 10 O -0.56 -17.09 13.00 -3.03 -0.04 -17.13 16 11 N -0.61 -14.44 3.00 -816.96 -2.45 -16.89 16 12 C 0.12 2.81 6.53 86.51 0.57 3.38 16 13 C 0.04 1.20 5.27 86.54 0.46 1.66 16 14 N -0.53 -15.96 4.37 -898.79 -3.93 -19.89 16 15 C 0.06 1.91 5.45 85.56 0.47 2.37 16 16 C 0.44 20.01 7.44 87.66 0.65 20.67 16 17 O -0.61 -31.46 13.91 -3.06 -0.04 -31.51 16 18 N -0.58 -28.53 5.29 -306.98 -1.62 -30.15 16 19 C -0.33 -18.01 9.68 84.04 0.81 -17.20 16 20 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 21 C -0.02 -0.81 5.50 84.92 0.47 -0.35 16 22 N -0.92 -49.03 13.05 21.66 0.28 -48.75 16 23 Si 0.99 42.14 29.55 68.60 2.03 44.16 16 24 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 25 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 26 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 27 C 0.05 1.11 5.62 86.40 0.49 1.59 16 28 C 0.12 2.82 6.60 86.36 0.57 3.39 16 29 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.08 0.91 7.69 -2.39 -0.02 0.89 16 34 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.03 0.66 8.03 -2.38 -0.02 0.64 16 37 H 0.08 2.23 6.00 -2.39 -0.01 2.22 16 38 H 0.12 1.91 7.99 -2.38 -0.02 1.89 16 39 H 0.08 1.26 7.34 -2.39 -0.02 1.24 16 40 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.11 1.88 6.02 -2.39 -0.01 1.86 16 42 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.08 3.00 5.76 -2.39 -0.01 2.99 16 44 H 0.06 1.91 8.12 -2.39 -0.02 1.89 16 45 H 0.11 3.20 7.97 -2.39 -0.02 3.18 16 46 H 0.40 18.73 7.90 -92.71 -0.73 18.00 16 47 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 48 H 0.04 0.86 8.14 -2.39 -0.02 0.85 16 49 H 0.10 2.08 7.99 -2.39 -0.02 2.07 16 50 H 0.09 2.21 7.06 -2.38 -0.02 2.19 16 51 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -67.99 395.47 -2.64 -70.64 By element: Atomic # 1 Polarization: 36.09 SS G_CDS: 0.19 Total: 36.29 kcal Atomic # 6 Polarization: 20.58 SS G_CDS: 7.16 Total: 27.74 kcal Atomic # 7 Polarization: -118.24 SS G_CDS: -11.94 Total: -130.19 kcal Atomic # 8 Polarization: -48.55 SS G_CDS: -0.08 Total: -48.64 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.16 kcal Total: -67.99 -2.64 -70.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113344056.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.477 kcal (2) G-P(sol) polarization free energy of solvation -67.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds