Wall clock time and date at job start Tue Mar 31 2020 21:59:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09002 * 110.90547 * 2 1
4 4 C 1.54903 * 110.99401 * 236.13192 * 2 1 3
5 5 N 1.47846 * 104.79921 * 204.83959 * 4 2 1
6 6 C 1.46904 * 111.00008 * 146.35668 * 5 4 2
7 7 C 1.47447 * 108.56424 * 24.09576 * 5 4 2
8 8 C 1.54312 * 107.23532 * 359.00746 * 7 5 4
9 9 H 1.09003 * 110.70516 * 96.27452 * 8 7 5
10 10 C 1.50700 * 110.71005 * 219.33622 * 8 7 5
11 11 O 1.21282 * 119.99871 * 97.51139 * 10 8 7
12 12 N 1.34776 * 119.99862 * 277.52175 * 10 8 7
13 13 C 1.47081 * 120.88214 * 355.01571 * 12 10 8
14 14 C 1.53232 * 108.52379 * 231.16689 * 13 12 10
15 15 N 1.46900 * 109.34148 * 306.17373 * 14 13 12
16 16 C 1.46900 * 111.00208 * 187.25050 * 15 14 13
17 17 C 1.50699 * 109.47247 * 169.99596 * 16 15 14
18 18 O 1.21293 * 119.99901 * 0.02562 * 17 16 15
19 19 N 1.34776 * 119.99918 * 180.02562 * 17 16 15
20 20 C 1.37097 * 119.99871 * 180.02562 * 19 17 16
21 21 H 1.08007 * 120.00179 * 359.72186 * 20 19 17
22 22 C 1.38952 * 120.00270 * 180.02562 * 20 19 17
23 23 N 1.31414 * 119.99618 * 359.71956 * 22 20 19
24 24 Si 1.86798 * 120.00412 * 179.72571 * 22 20 19
25 25 H 1.48504 * 109.46989 * 359.97438 * 24 22 20
26 26 H 1.48503 * 109.47412 * 119.99773 * 24 22 20
27 27 H 1.48507 * 109.47183 * 239.99814 * 24 22 20
28 28 C 1.46904 * 111.27091 * 63.10304 * 15 14 13
29 29 C 1.47082 * 120.88038 * 175.00122 * 12 10 8
30 30 H 1.09003 * 109.47089 * 296.14212 * 1 2 3
31 31 H 1.09003 * 109.46978 * 56.13235 * 1 2 3
32 32 H 1.08999 * 109.47185 * 176.13810 * 1 2 3
33 33 H 1.08992 * 110.37643 * 86.00638 * 4 2 1
34 34 H 1.09001 * 110.37128 * 323.66584 * 4 2 1
35 35 H 1.08992 * 109.47632 * 299.16104 * 6 5 4
36 36 H 1.09000 * 109.46632 * 59.16047 * 6 5 4
37 37 H 1.08999 * 109.47245 * 179.15410 * 6 5 4
38 38 H 1.09005 * 109.88267 * 239.60376 * 7 5 4
39 39 H 1.08995 * 110.02487 * 118.49255 * 7 5 4
40 40 H 1.09005 * 109.62204 * 111.45697 * 13 12 10
41 41 H 1.08997 * 109.78806 * 350.97277 * 13 12 10
42 42 H 1.09000 * 109.49823 * 186.21071 * 14 13 12
43 43 H 1.09006 * 109.49619 * 66.13076 * 14 13 12
44 44 H 1.09003 * 109.46877 * 49.99977 * 16 15 14
45 45 H 1.09000 * 109.47717 * 290.00090 * 16 15 14
46 46 H 0.97001 * 120.00446 * 0.02562 * 19 17 16
47 47 H 0.97006 * 119.99728 * 180.02562 * 23 22 20
48 48 H 1.09002 * 109.48911 * 56.85391 * 28 15 14
49 49 H 1.08998 * 109.49112 * 176.93496 * 28 15 14
50 50 H 1.08994 * 109.62818 * 248.53968 * 29 12 10
51 51 H 1.09001 * 109.62602 * 9.12370 * 29 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9189 1.0183 0.0000
4 6 2.0849 -0.8059 -1.2008
5 7 3.4313 -1.2420 -0.7731
6 6 3.7611 -2.5590 -1.3342
7 6 3.4691 -1.2711 0.7006
8 6 2.0858 -0.8071 1.2028
9 1 1.4485 -1.6636 1.4230
10 6 2.2277 0.0750 2.4164
11 8 2.2059 1.2815 2.2950
12 7 2.3791 -0.4769 3.6366
13 6 2.2998 -1.9340 3.8212
14 6 1.3072 -2.2282 4.9509
15 7 1.6943 -1.4705 6.1484
16 6 0.8717 -1.8546 7.3032
17 6 1.4497 -1.2479 8.5558
18 8 2.4484 -0.5625 8.4925
19 7 0.8569 -1.4669 9.7462
20 6 1.3825 -0.9145 10.8856
21 1 2.2741 -0.3075 10.8299
22 6 0.7717 -1.1407 12.1130
23 7 -0.3129 -1.8796 12.1809
24 14 1.4921 -0.3944 13.6665
25 1 2.7059 0.3891 13.3224
26 1 0.4881 0.4992 14.2981
27 1 1.8554 -1.4785 14.6141
28 6 1.6226 -0.0228 5.9093
29 6 2.6283 0.3618 4.8189
30 1 -0.3633 0.4528 0.9226
31 1 -0.3633 0.5727 -0.8533
32 1 -0.3633 -1.0253 -0.0692
33 1 2.1545 -0.1713 -2.0842
34 1 1.4524 -1.6704 -1.4024
35 1 3.0399 -3.2957 -0.9805
36 1 3.7258 -2.5094 -2.4225
37 1 4.7625 -2.8491 -1.0160
38 1 4.2421 -0.5944 1.0651
39 1 3.6693 -2.2843 1.0489
40 1 3.2827 -2.3233 4.0867
41 1 1.9562 -2.4045 2.9001
42 1 1.3179 -3.2947 5.1761
43 1 0.3051 -1.9316 4.6411
44 1 0.8615 -2.9406 7.3969
45 1 -0.1465 -1.4927 7.1607
46 1 0.0585 -2.0153 9.7969
47 1 -0.7396 -2.0372 13.0377
48 1 0.6161 0.2430 5.5860
49 1 1.8622 0.5101 6.8294
50 1 3.6426 0.1930 5.1803
51 1 2.4999 1.4119 4.5564
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001113345801.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:59:08
Heat of formation + Delta-G solvation = -47.729225 kcal
Electronic energy + Delta-G solvation = -30263.189699 eV
Core-core repulsion = 26197.761975 eV
Total energy + Delta-G solvation = -4065.427724 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 0.94 seconds
Orbital eigenvalues (eV)
-40.83346 -39.23415 -38.32445 -37.20966 -34.57397 -33.78088 -33.65391 -31.54307
-31.22314 -30.34046 -28.73583 -27.41419 -25.93997 -25.20718 -23.92420 -23.66363
-22.11241 -21.19281 -20.44497 -19.27888 -18.92775 -17.93150 -17.57965 -16.37968
-16.13824 -15.97917 -15.28702 -15.20223 -15.03978 -14.82219 -14.64940 -14.56031
-14.06777 -13.98511 -13.93926 -13.68444 -13.59890 -13.36589 -13.00995 -12.67782
-12.60347 -12.43699 -12.20115 -12.03362 -11.89259 -11.64329 -11.56498 -11.45953
-11.27305 -11.19556 -11.12881 -10.97978 -10.90065 -10.85764 -10.36155 -10.25225
-9.80746 -9.51215 -8.89161 -8.74620 -8.40626 -8.02166 -7.93140 -6.44849
-3.85611 2.47540 2.83735 3.14346 3.25393 3.32437 3.56934 3.83955
3.88062 4.05995 4.18562 4.20033 4.39905 4.62349 4.76427 4.83466
4.89962 4.91745 4.95835 5.02706 5.02943 5.12441 5.15287 5.21732
5.24002 5.29922 5.37602 5.39421 5.41291 5.48201 5.56413 5.62514
5.63754 5.70348 5.74884 5.80150 5.85053 5.86994 6.02908 6.11935
6.20111 6.21698 6.48516 6.51433 6.62772 7.09811 7.26710 7.35442
7.52740 8.03230 8.06590 8.57918 9.15027 9.50782 10.01976 10.72846
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.029609 B = 0.002031 C = 0.002019
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 945.420548 B =13783.898482 C =13865.597665
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.084 4.084
3 H 0.102 0.898
4 C 0.045 3.955
5 N -0.532 5.532
6 C 0.019 3.981
7 C 0.059 3.941
8 C -0.131 4.131
9 H 0.097 0.903
10 C 0.526 3.474
11 O -0.538 6.538
12 N -0.611 5.611
13 C 0.113 3.887
14 C 0.039 3.961
15 N -0.514 5.514
16 C 0.047 3.953
17 C 0.443 3.557
18 O -0.577 6.577
19 N -0.563 5.563
20 C -0.298 4.298
21 H 0.104 0.896
22 C 0.022 3.978
23 N -0.901 5.901
24 Si 0.929 3.071
25 H -0.268 1.268
26 H -0.282 1.282
27 H -0.281 1.281
28 C 0.040 3.960
29 C 0.120 3.880
30 H 0.060 0.940
31 H 0.061 0.939
32 H 0.053 0.947
33 H 0.084 0.916
34 H 0.049 0.951
35 H 0.028 0.972
36 H 0.069 0.931
37 H 0.070 0.930
38 H 0.083 0.917
39 H 0.064 0.936
40 H 0.080 0.920
41 H 0.083 0.917
42 H 0.087 0.913
43 H 0.034 0.966
44 H 0.090 0.910
45 H 0.047 0.953
46 H 0.392 0.608
47 H 0.271 0.729
48 H 0.026 0.974
49 H 0.116 0.884
50 H 0.079 0.921
51 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.854 -4.373 -25.259 25.649
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.104 4.104
3 H 0.120 0.880
4 C -0.082 4.082
5 N -0.256 5.256
6 C -0.130 4.130
7 C -0.069 4.069
8 C -0.153 4.153
9 H 0.115 0.885
10 C 0.314 3.686
11 O -0.415 6.415
12 N -0.344 5.344
13 C -0.011 4.011
14 C -0.090 4.090
15 N -0.239 5.239
16 C -0.085 4.085
17 C 0.228 3.772
18 O -0.461 6.461
19 N -0.200 5.200
20 C -0.427 4.427
21 H 0.122 0.878
22 C -0.180 4.180
23 N -0.543 5.543
24 Si 0.757 3.243
25 H -0.192 1.192
26 H -0.208 1.208
27 H -0.208 1.208
28 C -0.088 4.088
29 C -0.002 4.002
30 H 0.079 0.921
31 H 0.080 0.920
32 H 0.072 0.928
33 H 0.102 0.898
34 H 0.068 0.932
35 H 0.047 0.953
36 H 0.088 0.912
37 H 0.088 0.912
38 H 0.101 0.899
39 H 0.082 0.918
40 H 0.098 0.902
41 H 0.101 0.899
42 H 0.105 0.895
43 H 0.053 0.947
44 H 0.108 0.892
45 H 0.065 0.935
46 H 0.225 0.775
47 H 0.081 0.919
48 H 0.045 0.955
49 H 0.134 0.866
50 H 0.097 0.903
51 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges 2.283 -3.092 -25.272 25.563
hybrid contribution -1.746 -0.742 1.141 2.213
sum 0.537 -3.834 -24.132 24.440
Atomic orbital electron populations
1.21711 0.93985 1.01646 1.02545 1.22246 0.95933 1.00652 0.91531
0.87979 1.23173 0.88172 0.98506 0.98368 1.63574 1.27735 1.26917
1.07342 1.22574 1.00965 0.88875 1.00570 1.22715 0.95374 1.01113
0.87741 1.22675 0.99220 0.99128 0.94278 0.88460 1.20225 0.75981
0.88657 0.83785 1.90683 1.50463 1.14841 1.85521 1.48254 1.70931
1.07714 1.07509 1.21872 1.00781 0.80247 0.98164 1.22493 0.96422
0.99332 0.90759 1.61516 1.54293 1.05448 1.02624 1.21850 0.94666
1.01069 0.90867 1.19703 0.86943 0.86264 0.84271 1.90487 1.26927
1.42759 1.85976 1.41879 1.26761 1.45819 1.05532 1.19748 1.10875
1.28322 0.83792 0.87807 1.25274 0.96077 0.97179 0.99476 1.69622
1.19326 1.38573 1.26761 0.85799 0.79000 0.78669 0.80876 1.19184
1.20772 1.20751 1.22654 0.96751 0.88799 1.00569 1.21767 0.99848
0.95425 0.83189 0.92140 0.91979 0.92794 0.89787 0.93250 0.95349
0.91214 0.91161 0.89917 0.91807 0.90187 0.89874 0.89463 0.94736
0.89211 0.93457 0.77506 0.91914 0.95547 0.86632 0.90276 0.88924
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.11 9.31 37.16 0.35 -0.77 16
2 C -0.08 -0.76 2.88 -88.48 -0.25 -1.02 16
3 H 0.10 1.17 7.23 -51.93 -0.38 0.80 16
4 C 0.05 0.34 6.20 -2.30 -0.01 0.33 16
5 N -0.53 -4.51 5.44 -239.52 -1.30 -5.82 16
6 C 0.02 0.12 9.12 60.07 0.55 0.67 16
7 C 0.06 0.51 6.48 -2.84 -0.02 0.49 16
8 C -0.13 -1.21 1.89 -89.95 -0.17 -1.38 16
9 H 0.10 0.74 6.31 -51.93 -0.33 0.42 16
10 C 0.53 6.67 6.81 -10.99 -0.07 6.59 16
11 O -0.54 -8.74 15.16 5.56 0.08 -8.66 16
12 N -0.61 -7.56 3.01 -172.46 -0.52 -8.08 16
13 C 0.11 1.11 6.47 -3.60 -0.02 1.08 16
14 C 0.04 0.44 5.62 -3.70 -0.02 0.42 16
15 N -0.51 -8.03 4.37 -235.76 -1.03 -9.07 16
16 C 0.05 0.79 5.45 -4.98 -0.03 0.76 16
17 C 0.44 10.07 7.44 -10.99 -0.08 9.99 16
18 O -0.58 -14.96 13.91 5.55 0.08 -14.88 16
19 N -0.56 -13.92 5.29 -10.96 -0.06 -13.98 16
20 C -0.30 -8.15 9.68 -14.93 -0.14 -8.29 16
21 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16
22 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16
23 N -0.90 -24.22 13.05 55.50 0.72 -23.49 16
24 Si 0.93 20.85 29.55 -169.99 -5.02 15.82 16
25 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16
26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16
27 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16
28 C 0.04 0.65 5.26 -3.70 -0.02 0.63 16
29 C 0.12 1.74 6.61 -3.60 -0.02 1.72 16
30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16
31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16
32 H 0.05 0.36 8.07 -51.93 -0.42 -0.06 16
33 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16
34 H 0.05 0.32 7.63 -51.93 -0.40 -0.07 16
35 H 0.03 0.16 8.10 -51.93 -0.42 -0.26 16
36 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16
37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16
38 H 0.08 0.86 7.81 -51.93 -0.41 0.46 16
39 H 0.06 0.45 7.59 -51.93 -0.39 0.06 16
40 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16
41 H 0.08 0.59 5.58 -51.93 -0.29 0.30 16
42 H 0.09 0.84 7.99 -51.93 -0.41 0.43 16
43 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16
44 H 0.09 1.35 7.97 -51.93 -0.41 0.93 16
45 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16
46 H 0.39 9.27 7.90 -40.82 -0.32 8.95 16
47 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16
48 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16
49 H 0.12 2.25 5.76 -51.93 -0.30 1.95 16
50 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16
51 H 0.09 1.40 7.04 -51.93 -0.37 1.03 16
LS Contribution 397.67 15.07 5.99 5.99
Total: -1.00 -32.21 397.67 -9.71 -41.93
By element:
Atomic # 1 Polarization: 17.10 SS G_CDS: -8.58 Total: 8.52 kcal
Atomic # 6 Polarization: 11.79 SS G_CDS: -0.07 Total: 11.71 kcal
Atomic # 7 Polarization: -58.25 SS G_CDS: -2.19 Total: -60.44 kcal
Atomic # 8 Polarization: -23.70 SS G_CDS: 0.16 Total: -23.54 kcal
Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal
Total LS contribution 5.99 Total: 5.99 kcal
Total: -32.21 -9.71 -41.93 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001113345801.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -5.801 kcal
(2) G-P(sol) polarization free energy of solvation -32.214 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.015 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.714 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.928 kcal
(6) G-S(sol) free energy of system = (1) + (5) -47.729 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.94 seconds