Wall clock time and date at job start Tue Mar 31 2020 20:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47410 * 2 1 4 4 N 1.46494 * 109.47102 * 120.00526 * 2 1 3 5 5 C 1.34779 * 120.00288 * 84.99975 * 4 2 1 6 6 O 1.21284 * 119.99908 * 359.97438 * 5 4 2 7 7 C 1.50702 * 120.00137 * 179.97438 * 5 4 2 8 8 N 1.46896 * 109.47141 * 179.97438 * 7 5 4 9 9 C 1.46895 * 111.00133 * 66.04864 * 8 7 5 10 10 C 1.46902 * 111.00280 * 190.00329 * 8 7 5 11 11 C 1.50697 * 109.47310 * 169.99799 * 10 8 7 12 12 O 1.21278 * 120.00198 * 0.02562 * 11 10 8 13 13 N 1.34774 * 119.99646 * 179.97438 * 11 10 8 14 14 C 1.46500 * 119.99747 * 180.02562 * 13 11 10 15 15 H 1.09006 * 115.49648 * 9.61675 * 14 13 11 16 16 C 1.53004 * 117.44340 * 224.23879 * 14 13 11 17 17 H 1.09005 * 119.53418 * 4.12055 * 16 14 13 18 18 C 1.54787 * 117.94112 * 160.75128 * 16 14 13 19 19 N 1.48152 * 104.41612 * 87.46631 * 18 16 14 20 20 C 1.36932 * 127.83711 * 140.36690 * 19 18 16 21 21 H 1.08006 * 120.00184 * 338.37942 * 20 19 18 22 22 C 1.38810 * 120.00103 * 158.37419 * 20 19 18 23 23 N 1.31626 * 119.99997 * 335.56934 * 22 20 19 24 24 Si 1.86797 * 120.00334 * 155.56671 * 22 20 19 25 25 H 1.48500 * 109.47402 * 59.99966 * 24 22 20 26 26 H 1.48498 * 109.46879 * 300.00011 * 24 22 20 27 27 H 1.48504 * 109.47354 * 180.02562 * 24 22 20 28 28 C 1.48143 * 104.32261 * 320.10979 * 19 18 16 29 29 C 1.53006 * 117.44403 * 155.00198 * 14 13 11 30 30 H 1.08994 * 120.26147 * 356.16299 * 29 14 13 31 31 H 1.09003 * 109.47170 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46927 * 299.99891 * 1 2 3 33 33 H 1.09000 * 109.47591 * 59.99625 * 1 2 3 34 34 H 1.09001 * 109.46927 * 240.00108 * 2 1 3 35 35 H 1.09000 * 109.47615 * 179.97438 * 3 2 1 36 36 H 1.09005 * 109.47449 * 300.00539 * 3 2 1 37 37 H 1.09001 * 109.46987 * 60.00145 * 3 2 1 38 38 H 0.96998 * 119.99815 * 264.98929 * 4 2 1 39 39 H 1.09007 * 109.46634 * 60.00044 * 7 5 4 40 40 H 1.08999 * 109.47062 * 300.00473 * 7 5 4 41 41 H 1.09006 * 109.47543 * 183.95599 * 9 8 7 42 42 H 1.09005 * 109.47410 * 303.95525 * 9 8 7 43 43 H 1.08999 * 109.47365 * 63.94981 * 9 8 7 44 44 H 1.09003 * 109.46806 * 49.99903 * 10 8 7 45 45 H 1.08994 * 109.46815 * 290.00526 * 10 8 7 46 46 H 0.97003 * 120.00572 * 0.02562 * 13 11 10 47 47 H 1.09004 * 110.54614 * 328.72982 * 18 16 14 48 48 H 1.08995 * 110.46653 * 206.16850 * 18 16 14 49 49 H 0.97000 * 119.99542 * 354.36372 * 23 22 20 50 50 H 1.09004 * 110.40887 * 158.63172 * 28 19 18 51 51 H 1.09005 * 110.40529 * 281.05835 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1470 -2.0323 1.1942 6 8 1.8581 -2.6679 0.2024 7 6 2.6499 -2.7428 2.4245 8 7 2.6986 -4.1886 2.1694 9 6 3.7025 -4.5091 1.1460 10 6 2.9546 -4.9336 3.4094 11 6 2.7554 -6.4065 3.1606 12 8 2.4325 -6.7973 2.0589 13 7 2.9370 -7.2896 4.1624 14 6 2.7439 -8.7216 3.9205 15 1 2.6157 -9.0080 2.8766 16 6 1.9634 -9.5151 4.9703 17 1 1.5212 -8.9933 5.8190 18 6 1.3595 -10.8767 4.5492 19 7 2.4474 -11.8530 4.7902 20 6 2.3419 -13.1190 5.3013 21 1 1.4814 -13.3921 5.8942 22 6 3.3407 -14.0515 5.0572 23 7 4.1129 -13.9271 3.9985 24 14 3.5892 -15.4831 6.2313 25 1 2.3474 -16.2951 6.2916 26 1 3.9069 -14.9631 7.5855 27 1 4.7113 -16.3287 5.7504 28 6 3.6745 -11.1513 4.3470 29 6 3.4892 -9.6977 4.8331 30 1 4.1828 -9.3247 5.5866 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 3.1300 1.4425 0.0005 36 1 1.6766 1.9564 -0.8900 37 1 1.6767 1.9562 0.8900 38 1 2.2491 -0.1824 1.9893 39 1 1.9776 -2.5438 3.2591 40 1 3.6492 -2.3826 2.6690 41 1 3.6691 -5.5762 0.9258 42 1 3.4894 -3.9441 0.2385 43 1 4.6938 -4.2449 1.5140 44 1 2.2638 -4.5991 4.1833 45 1 3.9792 -4.7554 3.7353 46 1 3.1957 -6.9772 5.0436 47 1 1.0869 -10.8643 3.4939 48 1 0.4917 -11.1151 5.1640 49 1 3.9328 -13.2324 3.3460 50 1 4.5553 -11.5972 4.8090 51 1 3.7579 -11.1811 3.2605 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114521002.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:55 Heat of formation + Delta-G solvation = 1.240186 kcal Electronic energy + Delta-G solvation = -28839.425671 eV Core-core repulsion = 24776.121421 eV Total energy + Delta-G solvation = -4063.304251 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.43991 -39.85084 -38.61234 -36.97722 -35.87745 -34.60271 -32.83094 -32.16356 -30.34822 -28.90448 -27.99880 -27.70416 -27.35226 -25.39372 -23.87406 -21.96205 -21.41430 -20.75517 -20.57858 -20.08516 -19.41153 -17.72644 -17.44080 -17.08655 -16.48749 -16.43681 -16.10319 -15.68660 -14.83370 -14.77255 -14.66939 -14.19079 -14.13960 -13.86464 -13.58713 -13.56024 -13.38829 -13.14155 -12.96653 -12.82289 -12.66372 -12.42134 -12.31302 -12.01594 -11.94760 -11.68167 -11.64872 -11.51872 -11.41861 -10.75286 -10.68383 -10.54964 -10.24586 -10.16514 -10.03151 -9.70618 -9.62762 -9.46732 -9.22389 -8.63829 -8.54390 -8.37876 -6.99264 -6.12987 -3.19215 2.34479 2.53338 2.61442 3.02604 3.49687 3.52790 3.71287 3.76105 4.19125 4.26400 4.47366 4.54051 4.55822 4.59494 4.75221 4.77113 4.79072 4.93040 4.97462 5.04214 5.07987 5.20325 5.24676 5.29987 5.30896 5.37720 5.43595 5.43641 5.48106 5.61887 5.72445 5.80649 5.81928 5.93214 6.05669 6.12573 6.22679 6.38912 6.54825 6.62399 6.65165 6.73739 6.77288 6.96783 6.99115 7.13592 7.54447 7.74556 7.94699 8.29328 8.44582 8.97173 9.78033 10.41178 11.22674 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.042921 B = 0.001573 C = 0.001569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.204665 B =17800.273436 C =17845.723901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.137 3.863 3 C -0.160 4.160 4 N -0.733 5.733 5 C 0.513 3.487 6 O -0.511 6.511 7 C 0.036 3.964 8 N -0.506 5.506 9 C 0.013 3.987 10 C 0.038 3.962 11 C 0.515 3.485 12 O -0.513 6.513 13 N -0.701 5.701 14 C 0.104 3.896 15 H 0.132 0.868 16 C -0.181 4.181 17 H 0.105 0.895 18 C 0.154 3.846 19 N -0.596 5.596 20 C -0.332 4.332 21 H 0.065 0.935 22 C -0.026 4.026 23 N -0.917 5.917 24 Si 1.070 2.930 25 H -0.292 1.292 26 H -0.293 1.293 27 H -0.284 1.284 28 C 0.166 3.834 29 C -0.178 4.178 30 H 0.105 0.895 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.060 0.940 38 H 0.398 0.602 39 H 0.104 0.896 40 H 0.064 0.936 41 H 0.092 0.908 42 H 0.085 0.915 43 H 0.016 0.984 44 H 0.104 0.896 45 H 0.065 0.935 46 H 0.398 0.602 47 H 0.027 0.973 48 H 0.054 0.946 49 H 0.269 0.731 50 H 0.068 0.932 51 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.177 33.639 -0.769 33.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.033 3.967 3 C -0.218 4.218 4 N -0.387 5.387 5 C 0.298 3.702 6 O -0.385 6.385 7 C -0.095 4.095 8 N -0.230 5.230 9 C -0.134 4.134 10 C -0.093 4.093 11 C 0.300 3.700 12 O -0.387 6.387 13 N -0.351 5.351 14 C -0.002 4.002 15 H 0.149 0.851 16 C -0.202 4.202 17 H 0.123 0.877 18 C 0.028 3.972 19 N -0.321 5.321 20 C -0.459 4.459 21 H 0.083 0.917 22 C -0.227 4.227 23 N -0.557 5.557 24 Si 0.900 3.100 25 H -0.219 1.219 26 H -0.221 1.221 27 H -0.210 1.210 28 C 0.040 3.960 29 C -0.199 4.199 30 H 0.123 0.877 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.105 0.895 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.232 0.768 39 H 0.122 0.878 40 H 0.082 0.918 41 H 0.110 0.890 42 H 0.104 0.896 43 H 0.034 0.966 44 H 0.122 0.878 45 H 0.083 0.917 46 H 0.231 0.769 47 H 0.045 0.955 48 H 0.072 0.928 49 H 0.080 0.920 50 H 0.086 0.914 51 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -1.147 31.240 -2.135 31.333 hybrid contribution -0.047 2.175 1.113 2.444 sum -1.194 33.414 -1.022 33.451 Atomic orbital electron populations 1.22190 0.95202 1.02899 1.01986 1.20912 0.94272 0.92670 0.88881 1.22076 1.01654 0.95080 1.02967 1.46114 1.68749 1.06956 1.16877 1.20511 0.77902 0.81946 0.89798 1.90732 1.47784 1.65338 1.34615 1.21994 1.01464 0.89379 0.96711 1.61282 1.50793 1.03253 1.07685 1.22750 0.90046 1.05078 0.95536 1.21989 1.01768 0.92166 0.93422 1.20338 0.77296 0.87638 0.84746 1.90717 1.44940 1.79807 1.23273 1.45347 1.70449 1.06055 1.13244 1.21788 1.03008 0.77514 0.97891 0.85052 1.24457 0.95411 0.99276 1.01092 0.87718 1.21201 0.92176 0.86393 0.97428 1.45280 1.00048 1.12260 1.74501 1.19744 1.10779 0.86466 1.28939 0.91719 1.25892 0.96828 1.00464 0.99561 1.70767 1.42444 1.34133 1.08375 0.83450 0.76128 0.75388 0.75082 1.21905 1.22069 1.20997 1.21112 0.91991 0.86317 0.96577 1.24418 0.95428 0.97515 1.02574 0.87657 0.91839 0.92549 0.91678 0.89453 0.92019 0.90895 0.92078 0.76845 0.87754 0.91813 0.88995 0.89609 0.96590 0.87751 0.91687 0.76864 0.95507 0.92803 0.92009 0.91369 0.95405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.02 9.48 37.16 0.35 -0.67 16 2 C 0.14 0.82 3.18 -67.94 -0.22 0.60 16 3 C -0.16 -0.53 9.38 37.15 0.35 -0.18 16 4 N -0.73 -4.23 5.08 -53.81 -0.27 -4.51 16 5 C 0.51 4.73 7.49 -10.98 -0.08 4.64 16 6 O -0.51 -7.17 13.99 5.55 0.08 -7.09 16 7 C 0.04 0.26 5.45 -4.98 -0.03 0.23 16 8 N -0.51 -5.61 4.24 -245.82 -1.04 -6.65 16 9 C 0.01 0.16 8.85 60.06 0.53 0.69 16 10 C 0.04 0.34 5.45 -4.98 -0.03 0.32 16 11 C 0.51 6.98 7.55 -10.99 -0.08 6.90 16 12 O -0.51 -9.42 13.87 5.56 0.08 -9.34 16 13 N -0.70 -8.88 5.56 -53.80 -0.30 -9.18 16 14 C 0.10 1.73 5.97 -67.93 -0.41 1.32 16 15 H 0.13 2.53 7.40 -51.93 -0.38 2.14 16 16 C -0.18 -3.22 7.08 -89.01 -0.63 -3.85 16 17 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 18 C 0.15 3.36 7.06 -2.19 -0.02 3.34 16 19 N -0.60 -15.48 3.22 -168.61 -0.54 -16.02 16 20 C -0.33 -9.50 10.19 -15.06 -0.15 -9.65 16 21 H 0.07 1.83 7.94 -52.48 -0.42 1.42 16 22 C -0.03 -0.74 5.12 -17.43 -0.09 -0.83 16 23 N -0.92 -28.04 12.82 55.49 0.71 -27.33 16 24 Si 1.07 25.43 29.98 -169.99 -5.10 20.34 16 25 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 26 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 27 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 28 C 0.17 3.92 5.00 -2.41 -0.01 3.91 16 29 C -0.18 -3.26 7.06 -89.22 -0.63 -3.88 16 30 H 0.11 1.72 8.14 -51.93 -0.42 1.30 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.09 0.71 7.58 -51.93 -0.39 0.32 16 35 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 36 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 37 H 0.06 0.15 8.14 -51.93 -0.42 -0.28 16 38 H 0.40 1.06 8.60 -40.82 -0.35 0.71 16 39 H 0.10 0.50 7.93 -51.92 -0.41 0.08 16 40 H 0.06 0.31 8.12 -51.93 -0.42 -0.11 16 41 H 0.09 1.38 5.88 -51.93 -0.31 1.08 16 42 H 0.09 1.15 5.82 -51.93 -0.30 0.85 16 43 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 44 H 0.10 0.67 7.93 -51.93 -0.41 0.26 16 45 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 46 H 0.40 3.70 8.83 -40.82 -0.36 3.34 16 47 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 49 H 0.27 8.29 6.42 -40.82 -0.26 8.03 16 50 H 0.07 1.75 7.47 -51.93 -0.39 1.36 16 51 H 0.03 0.69 7.67 -51.93 -0.40 0.29 16 LS Contribution 409.66 15.07 6.17 6.17 Total: -1.00 -37.50 409.66 -10.03 -47.53 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -8.67 Total: 3.19 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: -1.14 Total: 2.89 kcal Atomic # 7 Polarization: -62.24 SS G_CDS: -1.45 Total: -63.69 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: 0.15 Total: -16.43 kcal Atomic # 14 Polarization: 25.43 SS G_CDS: -5.10 Total: 20.34 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -37.50 -10.03 -47.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114521002.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.767 kcal (2) G-P(sol) polarization free energy of solvation -37.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds