Wall clock time and date at job start Tue Mar 31 2020 20:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47410 * 2 1 4 4 N 1.46494 * 109.47102 * 120.00526 * 2 1 3 5 5 C 1.34779 * 120.00288 * 84.99975 * 4 2 1 6 6 O 1.21284 * 119.99908 * 359.97438 * 5 4 2 7 7 C 1.50702 * 120.00137 * 179.97438 * 5 4 2 8 8 N 1.46896 * 109.47141 * 179.97438 * 7 5 4 9 9 C 1.46895 * 111.00133 * 66.04864 * 8 7 5 10 10 C 1.46902 * 111.00280 * 190.00329 * 8 7 5 11 11 C 1.50697 * 109.47310 * 169.99799 * 10 8 7 12 12 O 1.21278 * 120.00198 * 0.02562 * 11 10 8 13 13 N 1.34774 * 119.99646 * 179.97438 * 11 10 8 14 14 C 1.46500 * 119.99747 * 180.02562 * 13 11 10 15 15 H 1.09006 * 115.49648 * 9.61675 * 14 13 11 16 16 C 1.53004 * 117.44340 * 224.23879 * 14 13 11 17 17 H 1.09005 * 119.53418 * 4.12055 * 16 14 13 18 18 C 1.54787 * 117.94112 * 160.75128 * 16 14 13 19 19 N 1.48152 * 104.41612 * 87.46631 * 18 16 14 20 20 C 1.36932 * 127.83711 * 140.36690 * 19 18 16 21 21 H 1.08006 * 120.00184 * 338.37942 * 20 19 18 22 22 C 1.38810 * 120.00103 * 158.37419 * 20 19 18 23 23 N 1.31626 * 119.99997 * 335.56934 * 22 20 19 24 24 Si 1.86797 * 120.00334 * 155.56671 * 22 20 19 25 25 H 1.48500 * 109.47402 * 59.99966 * 24 22 20 26 26 H 1.48498 * 109.46879 * 300.00011 * 24 22 20 27 27 H 1.48504 * 109.47354 * 180.02562 * 24 22 20 28 28 C 1.48143 * 104.32261 * 320.10979 * 19 18 16 29 29 C 1.53006 * 117.44403 * 155.00198 * 14 13 11 30 30 H 1.08994 * 120.26147 * 356.16299 * 29 14 13 31 31 H 1.09003 * 109.47170 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46927 * 299.99891 * 1 2 3 33 33 H 1.09000 * 109.47591 * 59.99625 * 1 2 3 34 34 H 1.09001 * 109.46927 * 240.00108 * 2 1 3 35 35 H 1.09000 * 109.47615 * 179.97438 * 3 2 1 36 36 H 1.09005 * 109.47449 * 300.00539 * 3 2 1 37 37 H 1.09001 * 109.46987 * 60.00145 * 3 2 1 38 38 H 0.96998 * 119.99815 * 264.98929 * 4 2 1 39 39 H 1.09007 * 109.46634 * 60.00044 * 7 5 4 40 40 H 1.08999 * 109.47062 * 300.00473 * 7 5 4 41 41 H 1.09006 * 109.47543 * 183.95599 * 9 8 7 42 42 H 1.09005 * 109.47410 * 303.95525 * 9 8 7 43 43 H 1.08999 * 109.47365 * 63.94981 * 9 8 7 44 44 H 1.09003 * 109.46806 * 49.99903 * 10 8 7 45 45 H 1.08994 * 109.46815 * 290.00526 * 10 8 7 46 46 H 0.97003 * 120.00572 * 0.02562 * 13 11 10 47 47 H 1.09004 * 110.54614 * 328.72982 * 18 16 14 48 48 H 1.08995 * 110.46653 * 206.16850 * 18 16 14 49 49 H 0.97000 * 119.99542 * 354.36372 * 23 22 20 50 50 H 1.09004 * 110.40887 * 158.63172 * 28 19 18 51 51 H 1.09005 * 110.40529 * 281.05835 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1470 -2.0323 1.1942 6 8 1.8581 -2.6679 0.2024 7 6 2.6499 -2.7428 2.4245 8 7 2.6986 -4.1886 2.1694 9 6 3.7025 -4.5091 1.1460 10 6 2.9546 -4.9336 3.4094 11 6 2.7554 -6.4065 3.1606 12 8 2.4325 -6.7973 2.0589 13 7 2.9370 -7.2896 4.1624 14 6 2.7439 -8.7216 3.9205 15 1 2.6157 -9.0080 2.8766 16 6 1.9634 -9.5151 4.9703 17 1 1.5212 -8.9933 5.8190 18 6 1.3595 -10.8767 4.5492 19 7 2.4474 -11.8530 4.7902 20 6 2.3419 -13.1190 5.3013 21 1 1.4814 -13.3921 5.8942 22 6 3.3407 -14.0515 5.0572 23 7 4.1129 -13.9271 3.9985 24 14 3.5892 -15.4831 6.2313 25 1 2.3474 -16.2951 6.2916 26 1 3.9069 -14.9631 7.5855 27 1 4.7113 -16.3287 5.7504 28 6 3.6745 -11.1513 4.3470 29 6 3.4892 -9.6977 4.8331 30 1 4.1828 -9.3247 5.5866 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 3.1300 1.4425 0.0005 36 1 1.6766 1.9564 -0.8900 37 1 1.6767 1.9562 0.8900 38 1 2.2491 -0.1824 1.9893 39 1 1.9776 -2.5438 3.2591 40 1 3.6492 -2.3826 2.6690 41 1 3.6691 -5.5762 0.9258 42 1 3.4894 -3.9441 0.2385 43 1 4.6938 -4.2449 1.5140 44 1 2.2638 -4.5991 4.1833 45 1 3.9792 -4.7554 3.7353 46 1 3.1957 -6.9772 5.0436 47 1 1.0869 -10.8643 3.4939 48 1 0.4917 -11.1151 5.1640 49 1 3.9328 -13.2324 3.3460 50 1 4.5553 -11.5972 4.8090 51 1 3.7579 -11.1811 3.2605 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114521002.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:53 Heat of formation + Delta-G solvation = -28.816776 kcal Electronic energy + Delta-G solvation = -28840.729039 eV Core-core repulsion = 24776.121421 eV Total energy + Delta-G solvation = -4064.607618 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.35766 -40.87736 -39.99065 -37.72467 -36.62927 -36.22418 -34.46593 -32.73533 -32.13176 -29.72017 -29.14861 -28.79538 -28.09426 -27.31423 -24.84930 -23.39624 -22.15891 -21.98313 -21.40518 -21.32515 -20.99901 -19.53238 -18.52249 -17.95770 -17.66606 -17.09192 -16.78910 -16.53045 -16.18965 -15.81884 -15.54657 -15.47723 -15.42629 -15.26801 -15.01153 -14.92739 -14.55687 -13.94358 -13.89486 -13.75221 -13.63001 -13.30561 -13.16211 -13.08012 -12.91411 -12.76625 -12.61880 -12.55959 -12.49558 -12.28789 -12.24281 -11.90893 -11.90391 -11.80187 -11.64310 -11.08084 -10.87314 -10.66734 -10.59031 -10.06671 -9.76895 -9.27340 -9.12383 -8.40180 -5.43412 1.57018 1.57614 1.65701 1.70641 1.76600 1.85323 2.22483 2.62106 2.74655 3.02730 3.17796 3.44468 3.67819 3.69934 3.79623 3.82937 4.00153 4.00533 4.13659 4.21065 4.26023 4.28508 4.31493 4.32934 4.37682 4.43037 4.57799 4.61711 4.67975 4.73552 4.76397 4.76541 4.84313 4.93574 4.96883 5.03554 5.14703 5.19266 5.21530 5.26855 5.32424 5.49410 5.60483 5.61460 5.87018 5.91486 6.22888 6.58778 6.67214 6.77127 7.30248 7.38850 7.61469 8.28626 8.95038 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.042921 B = 0.001573 C = 0.001569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.204665 B =17800.273436 C =17845.723901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.133 3.867 3 C -0.151 4.151 4 N -0.715 5.715 5 C 0.505 3.495 6 O -0.572 6.572 7 C 0.040 3.960 8 N -0.539 5.539 9 C 0.024 3.976 10 C 0.048 3.952 11 C 0.508 3.492 12 O -0.570 6.570 13 N -0.683 5.683 14 C 0.124 3.876 15 H 0.098 0.902 16 C -0.165 4.165 17 H 0.141 0.859 18 C 0.146 3.854 19 N -0.621 5.621 20 C -0.343 4.343 21 H 0.065 0.935 22 C -0.080 4.080 23 N -0.946 5.946 24 Si 1.125 2.875 25 H -0.273 1.273 26 H -0.275 1.275 27 H -0.292 1.292 28 C 0.169 3.831 29 C -0.171 4.171 30 H 0.137 0.863 31 H 0.029 0.971 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.417 0.583 39 H 0.138 0.862 40 H 0.098 0.902 41 H 0.054 0.946 42 H 0.064 0.936 43 H 0.039 0.961 44 H 0.144 0.856 45 H 0.101 0.899 46 H 0.421 0.579 47 H 0.011 0.989 48 H 0.060 0.940 49 H 0.251 0.749 50 H 0.039 0.961 51 H 0.002 0.998 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.028 37.170 2.873 37.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.028 3.972 3 C -0.208 4.208 4 N -0.370 5.370 5 C 0.292 3.708 6 O -0.450 6.450 7 C -0.090 4.090 8 N -0.264 5.264 9 C -0.123 4.123 10 C -0.082 4.082 11 C 0.296 3.704 12 O -0.448 6.448 13 N -0.334 5.334 14 C 0.016 3.984 15 H 0.116 0.884 16 C -0.186 4.186 17 H 0.159 0.841 18 C 0.020 3.980 19 N -0.347 5.347 20 C -0.471 4.471 21 H 0.082 0.918 22 C -0.275 4.275 23 N -0.588 5.588 24 Si 0.948 3.052 25 H -0.199 1.199 26 H -0.201 1.201 27 H -0.218 1.218 28 C 0.043 3.957 29 C -0.192 4.192 30 H 0.155 0.845 31 H 0.048 0.952 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.254 0.746 39 H 0.156 0.844 40 H 0.116 0.884 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.057 0.943 44 H 0.161 0.839 45 H 0.119 0.881 46 H 0.259 0.741 47 H 0.029 0.971 48 H 0.079 0.921 49 H 0.061 0.939 50 H 0.058 0.942 51 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges -1.008 34.882 1.581 34.933 hybrid contribution -0.173 1.148 -0.130 1.168 sum -1.182 36.030 1.451 36.078 Atomic orbital electron populations 1.22144 0.95384 1.01013 1.03261 1.20932 0.94136 0.94088 0.88001 1.22007 1.01769 0.92904 1.04127 1.45991 1.67315 1.06159 1.17498 1.21099 0.77136 0.82731 0.89866 1.90721 1.50632 1.66752 1.36903 1.22110 1.03977 0.86655 0.96218 1.61090 1.50956 1.05913 1.08445 1.22470 0.91750 1.02250 0.95876 1.22055 1.04891 0.87957 0.93286 1.21366 0.75640 0.89696 0.83684 1.90722 1.47392 1.80974 1.25687 1.45121 1.70027 1.03786 1.14510 1.21255 1.01383 0.79855 0.95872 0.88387 1.24329 0.94358 0.97597 1.02326 0.84102 1.21327 0.91847 0.88025 0.96787 1.45585 1.02035 1.12416 1.74615 1.20075 1.10764 0.87900 1.28336 0.91766 1.27441 0.96690 1.03179 1.00208 1.70900 1.43890 1.34559 1.09498 0.82743 0.76444 0.72462 0.73576 1.19882 1.20075 1.21754 1.20931 0.90316 0.89657 0.94831 1.24161 0.96535 0.94805 1.03718 0.84515 0.95189 0.90914 0.90790 0.92429 0.91717 0.90361 0.90296 0.74577 0.84406 0.88418 0.92711 0.91685 0.94274 0.83851 0.88107 0.74109 0.97075 0.92147 0.93884 0.94217 0.98058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 9.48 71.98 0.68 -1.23 16 2 C 0.13 1.50 3.18 44.99 0.14 1.64 16 3 C -0.15 -0.66 9.38 71.98 0.68 0.01 16 4 N -0.72 -6.92 5.08 -442.55 -2.25 -9.17 16 5 C 0.50 8.73 7.49 87.66 0.66 9.39 16 6 O -0.57 -16.81 13.99 -3.04 -0.04 -16.85 16 7 C 0.04 0.43 5.45 85.56 0.47 0.90 16 8 N -0.54 -10.78 4.24 -931.65 -3.95 -14.73 16 9 C 0.02 0.60 8.85 127.69 1.13 1.73 16 10 C 0.05 0.68 5.45 85.56 0.47 1.14 16 11 C 0.51 12.82 7.55 87.66 0.66 13.48 16 12 O -0.57 -21.40 13.87 -3.02 -0.04 -21.44 16 13 N -0.68 -15.29 5.56 -442.52 -2.46 -17.75 16 14 C 0.12 4.01 5.97 44.99 0.27 4.28 16 15 H 0.10 3.94 7.40 -2.38 -0.02 3.92 16 16 C -0.17 -5.57 7.08 -9.75 -0.07 -5.64 16 17 H 0.14 3.82 8.14 -2.38 -0.02 3.80 16 18 C 0.15 6.40 7.06 86.67 0.61 7.01 16 19 N -0.62 -33.09 3.22 -687.35 -2.21 -35.30 16 20 C -0.34 -19.99 10.19 84.03 0.86 -19.13 16 21 H 0.06 3.67 7.94 -2.91 -0.02 3.64 16 22 C -0.08 -4.69 5.12 84.86 0.43 -4.26 16 23 N -0.95 -60.13 12.82 21.65 0.28 -59.86 16 24 Si 1.12 51.61 29.98 68.60 2.06 53.66 16 25 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 26 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 27 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 28 C 0.17 8.26 5.00 86.53 0.43 8.69 16 29 C -0.17 -6.07 7.06 -9.89 -0.07 -6.14 16 30 H 0.14 4.04 8.14 -2.39 -0.02 4.02 16 31 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.06 1.00 7.58 -2.39 -0.02 0.99 16 35 H 0.06 0.27 8.14 -2.39 -0.02 0.26 16 36 H 0.08 0.29 8.14 -2.38 -0.02 0.27 16 37 H 0.08 0.10 8.14 -2.39 -0.02 0.08 16 38 H 0.42 0.76 8.60 -92.71 -0.80 -0.04 16 39 H 0.14 0.56 7.93 -2.38 -0.02 0.54 16 40 H 0.10 0.44 8.12 -2.39 -0.02 0.42 16 41 H 0.05 1.73 5.88 -2.38 -0.01 1.72 16 42 H 0.06 1.84 5.82 -2.38 -0.01 1.83 16 43 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.14 0.95 7.93 -2.39 -0.02 0.93 16 45 H 0.10 0.78 8.12 -2.39 -0.02 0.76 16 46 H 0.42 5.72 8.83 -92.71 -0.82 4.90 16 47 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 48 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 49 H 0.25 16.43 6.42 -92.71 -0.59 15.84 16 50 H 0.04 2.13 7.47 -2.39 -0.02 2.11 16 51 H 0.00 0.09 7.67 -2.38 -0.02 0.07 16 Total: -1.00 -90.95 409.66 -1.78 -92.73 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -0.50 Total: 16.84 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: 7.35 Total: 11.87 kcal Atomic # 7 Polarization: -126.22 SS G_CDS: -10.59 Total: -136.81 kcal Atomic # 8 Polarization: -38.20 SS G_CDS: -0.08 Total: -38.29 kcal Atomic # 14 Polarization: 51.61 SS G_CDS: 2.06 Total: 53.66 kcal Total: -90.95 -1.78 -92.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114521002.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.910 kcal (2) G-P(sol) polarization free energy of solvation -90.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds