Wall clock time and date at job start Tue Mar 31 2020 22:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42906 * 114.00239 * 2 1 4 4 C 1.53000 * 109.47305 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.54064 * 55.10936 * 4 3 2 6 6 C 1.53098 * 109.50600 * 175.21569 * 4 3 2 7 7 N 1.47016 * 109.25391 * 176.78326 * 6 4 3 8 8 C 1.38586 * 110.99647 * 177.60788 * 7 6 4 9 9 N 1.31220 * 126.47226 * 359.85424 * 8 7 6 10 10 N 1.28522 * 109.85762 * 180.25702 * 9 8 7 11 11 C 1.30301 * 110.05317 * 359.74409 * 10 9 8 12 12 C 1.50707 * 126.34582 * 179.97438 * 11 10 9 13 13 C 1.53004 * 109.46675 * 270.04286 * 12 11 10 14 14 C 1.53002 * 109.46869 * 179.97438 * 13 12 11 15 15 C 1.50693 * 109.47226 * 180.02562 * 14 13 12 16 16 H 1.08004 * 120.00319 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99971 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00520 * 359.97438 * 17 15 14 19 19 Si 1.86811 * 120.00000 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47283 * 89.99350 * 19 17 15 21 21 H 1.48495 * 109.47010 * 209.99690 * 19 17 15 22 22 H 1.48504 * 109.46801 * 329.99304 * 19 17 15 23 23 N 1.36446 * 126.47158 * 179.68173 * 8 7 6 24 24 C 1.46506 * 127.13855 * 0.02562 * 23 8 7 25 25 C 1.47012 * 110.75610 * 301.38584 * 7 6 4 26 26 C 1.53099 * 109.25600 * 58.61802 * 25 7 6 27 27 H 1.09001 * 109.50898 * 63.08788 * 26 25 7 28 28 C 1.52999 * 109.50229 * 183.21528 * 26 25 7 29 29 O 1.43009 * 109.25937 * 303.14978 * 26 25 7 30 30 H 1.09006 * 109.47097 * 300.00350 * 1 2 3 31 31 H 1.08999 * 109.46920 * 60.00084 * 1 2 3 32 32 H 1.08998 * 109.47453 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.46888 * 60.00280 * 3 2 1 34 34 H 1.08994 * 109.46904 * 300.00076 * 3 2 1 35 35 H 1.09001 * 109.50208 * 56.85556 * 6 4 3 36 36 H 1.08997 * 109.50470 * 296.71844 * 6 4 3 37 37 H 1.08997 * 109.46765 * 30.03827 * 12 11 10 38 38 H 1.08997 * 109.46783 * 150.04699 * 12 11 10 39 39 H 1.08995 * 109.47671 * 299.99853 * 13 12 11 40 40 H 1.08997 * 109.47178 * 60.00655 * 13 12 11 41 41 H 1.09001 * 109.47373 * 300.00334 * 14 13 12 42 42 H 1.09003 * 109.47027 * 59.99841 * 14 13 12 43 43 H 0.96992 * 120.00801 * 180.02562 * 18 17 15 44 44 H 1.08999 * 109.46871 * 269.70572 * 24 23 8 45 45 H 1.08994 * 109.46947 * 29.70280 * 24 23 8 46 46 H 1.08997 * 109.47271 * 149.70797 * 24 23 8 47 47 H 1.08996 * 109.50650 * 178.55215 * 25 7 6 48 48 H 1.08999 * 109.50679 * 298.68382 * 25 7 6 49 49 H 1.08998 * 109.47334 * 60.00514 * 28 26 25 50 50 H 1.09006 * 109.47192 * 179.97438 * 28 26 25 51 51 H 1.08997 * 109.47358 * 299.99879 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.8529 0.5700 -0.8417 6 6 4.1587 2.5779 -0.1197 7 7 5.6222 2.4627 -0.0410 8 6 6.2269 3.6996 -0.1999 9 7 5.6189 4.8452 -0.3989 10 7 6.4868 5.7870 -0.5073 11 6 7.6897 5.3029 -0.3795 12 6 8.9779 6.0824 -0.4448 13 6 9.4751 6.1252 -1.8912 14 6 10.7825 6.9172 -1.9577 15 6 11.2721 6.9599 -3.3822 16 1 10.7070 6.4715 -4.1624 17 6 12.4414 7.6226 -3.6898 18 7 13.1293 8.2179 -2.7401 19 14 13.0478 7.6762 -5.4559 20 1 12.4842 8.8694 -6.1369 21 1 14.5307 7.7538 -5.4679 22 1 12.6107 6.4479 -6.1668 23 7 7.5668 3.9564 -0.1757 24 6 8.6494 2.9892 0.0214 25 6 6.0282 1.8366 1.2256 26 6 5.3862 0.4508 1.3324 27 1 5.7574 -0.1852 0.5288 28 6 5.7399 -0.1732 2.6838 29 8 3.9661 0.5791 1.2226 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6887 1.8464 0.8901 34 1 1.6887 1.8464 -0.8899 35 1 3.7991 3.2089 0.6931 36 1 3.8793 3.0202 -1.0759 37 1 8.8060 7.0984 -0.0895 38 1 9.7269 5.5997 0.1828 39 1 9.6469 5.1093 -2.2466 40 1 8.7261 6.6080 -2.5188 41 1 10.6104 7.9332 -1.6024 42 1 11.5318 6.4349 -1.3299 43 1 13.9516 8.6844 -2.9564 44 1 8.8737 2.9066 1.0848 45 1 8.3416 2.0164 -0.3617 46 1 9.5384 3.3252 -0.5123 47 1 7.1134 1.7379 1.2515 48 1 5.6984 2.4558 2.0599 49 1 5.3665 0.4626 3.4865 50 1 5.2822 -1.1596 2.7595 51 1 6.8225 -0.2672 2.7685 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121303774.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:56 Heat of formation + Delta-G solvation = -11.399050 kcal Electronic energy + Delta-G solvation = -29770.390893 eV Core-core repulsion = 25706.538564 eV Total energy + Delta-G solvation = -4063.852329 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.96029 -40.31919 -38.08387 -36.36484 -35.37616 -34.43501 -33.67280 -32.43130 -30.64223 -29.56182 -27.94552 -27.60839 -27.07979 -26.03094 -24.95115 -23.74353 -22.47175 -21.40810 -20.88264 -20.68669 -20.08863 -17.50466 -17.32621 -16.88196 -16.55004 -16.41694 -16.26219 -15.98995 -15.53133 -15.45118 -15.20456 -14.72773 -14.50395 -14.08401 -13.88645 -13.78674 -13.52731 -13.18423 -13.00149 -12.88755 -12.55066 -12.37967 -12.24933 -12.03562 -11.96457 -11.81257 -11.58630 -11.46188 -11.36978 -11.04804 -10.89112 -10.84209 -10.64065 -10.52968 -10.20169 -10.09583 -10.05735 -9.79458 -9.73208 -9.43975 -9.14970 -8.37995 -8.25554 -6.03197 -4.05520 1.77563 2.13232 2.92061 3.12142 3.16322 3.30757 3.37060 3.40284 3.50329 4.18901 4.34647 4.43029 4.47392 4.53791 4.61996 4.65804 4.68064 4.74704 4.88664 4.89756 4.91618 4.95796 5.01480 5.03771 5.05775 5.14338 5.20266 5.26041 5.29713 5.32321 5.33010 5.42991 5.50332 5.60188 5.69157 5.79791 5.82677 5.95306 6.05084 6.27487 6.52313 6.58994 6.69216 6.72986 6.80395 6.99273 7.09015 7.61899 7.74673 7.95853 8.38346 8.87845 9.00987 9.58843 11.07974 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.020209 B = 0.001989 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.202575 B =14071.504170 C =14547.376952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.072 3.928 4 C 0.097 3.903 5 H 0.079 0.921 6 C 0.045 3.955 7 N -0.446 5.446 8 C 0.339 3.661 9 N -0.320 5.320 10 N -0.288 5.288 11 C 0.205 3.795 12 C -0.035 4.035 13 C -0.103 4.103 14 C 0.023 3.977 15 C -0.521 4.521 16 H 0.055 0.945 17 C 0.057 3.943 18 N -0.895 5.895 19 Si 0.892 3.108 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 N -0.481 5.481 24 C 0.071 3.929 25 C 0.016 3.984 26 C 0.093 3.907 27 H 0.072 0.928 28 C -0.144 4.144 29 O -0.367 6.367 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.086 0.914 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.078 0.922 39 H 0.045 0.955 40 H 0.057 0.943 41 H 0.020 0.980 42 H 0.017 0.983 43 H 0.261 0.739 44 H 0.078 0.922 45 H 0.091 0.909 46 H 0.101 0.899 47 H 0.093 0.907 48 H 0.058 0.942 49 H 0.064 0.936 50 H 0.071 0.929 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.241 -19.603 11.633 29.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C -0.006 4.006 4 C 0.038 3.962 5 H 0.097 0.903 6 C -0.083 4.083 7 N -0.170 5.170 8 C -0.017 4.017 9 N -0.164 5.164 10 N -0.126 5.126 11 C -0.062 4.062 12 C -0.075 4.075 13 C -0.142 4.142 14 C -0.014 4.014 15 C -0.559 4.559 16 H 0.073 0.927 17 C -0.144 4.144 18 N -0.534 5.534 19 Si 0.719 3.281 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.199 1.199 23 N -0.177 5.177 24 C -0.072 4.072 25 C -0.112 4.112 26 C 0.035 3.965 27 H 0.090 0.910 28 C -0.201 4.201 29 O -0.286 6.286 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.122 0.878 37 H 0.116 0.884 38 H 0.096 0.904 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.039 0.961 42 H 0.035 0.965 43 H 0.070 0.930 44 H 0.096 0.904 45 H 0.110 0.890 46 H 0.120 0.880 47 H 0.111 0.889 48 H 0.076 0.924 49 H 0.083 0.917 50 H 0.090 0.910 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -20.063 -19.064 11.244 29.873 hybrid contribution 1.277 -0.113 -0.497 1.375 sum -18.786 -19.177 10.746 28.917 Atomic orbital electron populations 1.22762 0.80779 1.02901 1.00083 1.87919 1.19757 1.27029 1.95441 1.22427 0.91015 0.85581 1.01548 1.22128 0.92977 0.92525 0.88525 0.90260 1.22600 0.83623 0.97095 1.04936 1.58788 1.09338 1.14930 1.33895 1.22388 0.81819 0.91999 1.05495 1.74532 1.24946 0.94407 1.22561 1.74013 0.96683 1.22755 1.19142 1.25311 0.98786 0.80185 1.01967 1.20369 0.87097 0.98813 1.01235 1.21661 1.00302 1.00784 0.91411 1.19103 0.90032 0.95136 0.97178 1.21219 1.07254 1.33743 0.93729 0.92718 1.25008 0.96756 0.95432 0.97173 1.69949 1.16124 1.35219 1.32112 0.86602 0.77831 0.78491 0.85137 1.20596 1.21220 1.19933 1.46049 1.06262 1.09292 1.56060 1.22178 0.89632 0.92265 1.03116 1.23191 1.02079 0.96783 0.89125 1.22143 0.81329 0.93681 0.99371 0.90982 1.21742 1.01759 1.01728 0.94914 1.88074 1.21094 1.81130 1.38287 0.93947 0.93965 0.89501 0.92104 0.91156 0.91627 0.87771 0.88393 0.90378 0.93576 0.92397 0.96129 0.96489 0.92973 0.90381 0.89039 0.88033 0.88898 0.92404 0.91670 0.90976 0.90704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.38 -3.63 10.67 -39.94 -0.43 -4.06 16 3 C 0.07 0.59 5.61 37.16 0.21 0.79 16 4 C 0.10 0.90 3.09 -26.68 -0.08 0.82 16 5 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 6 C 0.04 0.47 4.30 -3.71 -0.02 0.46 16 7 N -0.45 -5.11 4.77 -174.21 -0.83 -5.95 16 8 C 0.34 4.95 7.23 -318.87 -2.30 2.65 16 9 N -0.32 -5.61 11.31 30.31 0.34 -5.27 16 10 N -0.29 -5.45 12.18 32.99 0.40 -5.05 16 11 C 0.21 3.42 7.32 -154.01 -1.13 2.29 16 12 C -0.04 -0.58 5.43 -27.88 -0.15 -0.73 16 13 C -0.10 -2.06 5.14 -26.73 -0.14 -2.19 16 14 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 15 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 16 H 0.05 1.50 7.74 -52.48 -0.41 1.10 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -26.39 13.29 55.43 0.74 -25.66 16 19 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 23 N -0.48 -6.70 3.21 -121.46 -0.39 -7.09 16 24 C 0.07 0.67 9.19 59.85 0.55 1.22 16 25 C 0.02 0.14 4.73 -3.71 -0.02 0.12 16 26 C 0.09 0.75 3.43 -26.68 -0.09 0.66 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 28 C -0.14 -0.88 9.57 37.16 0.36 -0.52 16 29 O -0.37 -3.73 10.08 -39.94 -0.40 -4.13 16 30 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.10 1.12 8.05 -51.93 -0.42 0.71 16 37 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 38 H 0.08 1.12 7.92 -51.93 -0.41 0.71 16 39 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 44 H 0.08 0.56 7.82 -51.93 -0.41 0.15 16 45 H 0.09 0.73 7.59 -51.93 -0.39 0.33 16 46 H 0.10 0.99 7.88 -51.93 -0.41 0.58 16 47 H 0.09 0.70 5.33 -51.93 -0.28 0.42 16 48 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 51 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 LS Contribution 410.99 15.07 6.19 6.19 Total: -1.00 -34.61 410.99 -10.69 -45.31 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -9.04 Total: -4.77 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -2.25 Total: -6.03 kcal Atomic # 7 Polarization: -49.28 SS G_CDS: 0.26 Total: -49.02 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: -0.83 Total: -8.19 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -34.61 -10.69 -45.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121303774.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.907 kcal (2) G-P(sol) polarization free energy of solvation -34.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds