Wall clock time and date at job start Tue Mar 31 2020 22:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42906 * 114.00239 * 2 1 4 4 C 1.53000 * 109.47305 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.54064 * 55.10936 * 4 3 2 6 6 C 1.53098 * 109.50600 * 175.21569 * 4 3 2 7 7 N 1.47016 * 109.25391 * 176.78326 * 6 4 3 8 8 C 1.38586 * 110.99647 * 177.60788 * 7 6 4 9 9 N 1.31220 * 126.47226 * 359.85424 * 8 7 6 10 10 N 1.28522 * 109.85762 * 180.25702 * 9 8 7 11 11 C 1.30301 * 110.05317 * 359.74409 * 10 9 8 12 12 C 1.50707 * 126.34582 * 179.97438 * 11 10 9 13 13 C 1.53004 * 109.46675 * 270.04286 * 12 11 10 14 14 C 1.53002 * 109.46869 * 179.97438 * 13 12 11 15 15 C 1.50693 * 109.47226 * 180.02562 * 14 13 12 16 16 H 1.08004 * 120.00319 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99971 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00520 * 359.97438 * 17 15 14 19 19 Si 1.86811 * 120.00000 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47283 * 89.99350 * 19 17 15 21 21 H 1.48495 * 109.47010 * 209.99690 * 19 17 15 22 22 H 1.48504 * 109.46801 * 329.99304 * 19 17 15 23 23 N 1.36446 * 126.47158 * 179.68173 * 8 7 6 24 24 C 1.46506 * 127.13855 * 0.02562 * 23 8 7 25 25 C 1.47012 * 110.75610 * 301.38584 * 7 6 4 26 26 C 1.53099 * 109.25600 * 58.61802 * 25 7 6 27 27 H 1.09001 * 109.50898 * 63.08788 * 26 25 7 28 28 C 1.52999 * 109.50229 * 183.21528 * 26 25 7 29 29 O 1.43009 * 109.25937 * 303.14978 * 26 25 7 30 30 H 1.09006 * 109.47097 * 300.00350 * 1 2 3 31 31 H 1.08999 * 109.46920 * 60.00084 * 1 2 3 32 32 H 1.08998 * 109.47453 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.46888 * 60.00280 * 3 2 1 34 34 H 1.08994 * 109.46904 * 300.00076 * 3 2 1 35 35 H 1.09001 * 109.50208 * 56.85556 * 6 4 3 36 36 H 1.08997 * 109.50470 * 296.71844 * 6 4 3 37 37 H 1.08997 * 109.46765 * 30.03827 * 12 11 10 38 38 H 1.08997 * 109.46783 * 150.04699 * 12 11 10 39 39 H 1.08995 * 109.47671 * 299.99853 * 13 12 11 40 40 H 1.08997 * 109.47178 * 60.00655 * 13 12 11 41 41 H 1.09001 * 109.47373 * 300.00334 * 14 13 12 42 42 H 1.09003 * 109.47027 * 59.99841 * 14 13 12 43 43 H 0.96992 * 120.00801 * 180.02562 * 18 17 15 44 44 H 1.08999 * 109.46871 * 269.70572 * 24 23 8 45 45 H 1.08994 * 109.46947 * 29.70280 * 24 23 8 46 46 H 1.08997 * 109.47271 * 149.70797 * 24 23 8 47 47 H 1.08996 * 109.50650 * 178.55215 * 25 7 6 48 48 H 1.08999 * 109.50679 * 298.68382 * 25 7 6 49 49 H 1.08998 * 109.47334 * 60.00514 * 28 26 25 50 50 H 1.09006 * 109.47192 * 179.97438 * 28 26 25 51 51 H 1.08997 * 109.47358 * 299.99879 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.8529 0.5700 -0.8417 6 6 4.1587 2.5779 -0.1197 7 7 5.6222 2.4627 -0.0410 8 6 6.2269 3.6996 -0.1999 9 7 5.6189 4.8452 -0.3989 10 7 6.4868 5.7870 -0.5073 11 6 7.6897 5.3029 -0.3795 12 6 8.9779 6.0824 -0.4448 13 6 9.4751 6.1252 -1.8912 14 6 10.7825 6.9172 -1.9577 15 6 11.2721 6.9599 -3.3822 16 1 10.7070 6.4715 -4.1624 17 6 12.4414 7.6226 -3.6898 18 7 13.1293 8.2179 -2.7401 19 14 13.0478 7.6762 -5.4559 20 1 12.4842 8.8694 -6.1369 21 1 14.5307 7.7538 -5.4679 22 1 12.6107 6.4479 -6.1668 23 7 7.5668 3.9564 -0.1757 24 6 8.6494 2.9892 0.0214 25 6 6.0282 1.8366 1.2256 26 6 5.3862 0.4508 1.3324 27 1 5.7574 -0.1852 0.5288 28 6 5.7399 -0.1732 2.6838 29 8 3.9661 0.5791 1.2226 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6887 1.8464 0.8901 34 1 1.6887 1.8464 -0.8899 35 1 3.7991 3.2089 0.6931 36 1 3.8793 3.0202 -1.0759 37 1 8.8060 7.0984 -0.0895 38 1 9.7269 5.5997 0.1828 39 1 9.6469 5.1093 -2.2466 40 1 8.7261 6.6080 -2.5188 41 1 10.6104 7.9332 -1.6024 42 1 11.5318 6.4349 -1.3299 43 1 13.9516 8.6844 -2.9564 44 1 8.8737 2.9066 1.0848 45 1 8.3416 2.0164 -0.3617 46 1 9.5384 3.3252 -0.5123 47 1 7.1134 1.7379 1.2515 48 1 5.6984 2.4558 2.0599 49 1 5.3665 0.4626 3.4865 50 1 5.2822 -1.1596 2.7595 51 1 6.8225 -0.2672 2.7685 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121303774.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:55 Heat of formation + Delta-G solvation = -32.041584 kcal Electronic energy + Delta-G solvation = -29771.286020 eV Core-core repulsion = 25706.538564 eV Total energy + Delta-G solvation = -4064.747456 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -44.13451 -41.10312 -38.72708 -37.28520 -36.76156 -35.81631 -34.41535 -34.24610 -31.71437 -30.71470 -29.02084 -28.42487 -28.22221 -26.82940 -25.76030 -25.49852 -23.19910 -22.47314 -22.25910 -21.68116 -21.41811 -18.60346 -18.30053 -18.03868 -17.60283 -17.54169 -17.29312 -16.68911 -16.57380 -16.33475 -16.11063 -16.03381 -15.64082 -15.57164 -15.00907 -14.53570 -14.42012 -14.26374 -13.96526 -13.79531 -13.67641 -13.43072 -13.27799 -13.02863 -12.91749 -12.73230 -12.70436 -12.66266 -12.54979 -12.44395 -12.38962 -12.04134 -11.85952 -11.64863 -11.57706 -11.38947 -11.26947 -11.25286 -10.96952 -10.67335 -10.60088 -10.53587 -9.42609 -8.19050 -6.28936 0.64857 1.09286 1.40503 1.41609 1.52032 1.69028 2.30514 2.41749 2.49195 2.77397 3.14473 3.32348 3.49795 3.60448 3.69250 3.75579 3.87218 3.96982 3.99780 4.12866 4.19722 4.22973 4.24324 4.30711 4.34107 4.37837 4.46014 4.48377 4.52599 4.56776 4.57921 4.60835 4.64474 4.76988 4.87483 4.87997 4.92069 5.00520 5.02588 5.08309 5.16721 5.24315 5.35419 5.41485 5.52645 5.75131 5.86368 6.02091 6.06548 6.18980 6.26670 6.86849 7.39752 7.65153 8.92128 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.020209 B = 0.001989 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.202575 B =14071.504170 C =14547.376952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.407 6.407 3 C 0.071 3.929 4 C 0.104 3.896 5 H 0.078 0.922 6 C 0.049 3.951 7 N -0.444 5.444 8 C 0.352 3.648 9 N -0.355 5.355 10 N -0.326 5.326 11 C 0.197 3.803 12 C -0.022 4.022 13 C -0.085 4.085 14 C 0.027 3.973 15 C -0.544 4.544 16 H 0.053 0.947 17 C 0.004 3.996 18 N -0.928 5.928 19 Si 0.959 3.041 20 H -0.276 1.276 21 H -0.279 1.279 22 H -0.266 1.266 23 N -0.477 5.477 24 C 0.060 3.940 25 C 0.017 3.983 26 C 0.092 3.908 27 H 0.079 0.921 28 C -0.140 4.140 29 O -0.382 6.382 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.097 0.903 33 H 0.062 0.938 34 H 0.085 0.915 35 H 0.056 0.944 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.053 0.947 40 H 0.039 0.961 41 H -0.003 1.003 42 H 0.008 0.992 43 H 0.264 0.736 44 H 0.108 0.892 45 H 0.110 0.890 46 H 0.101 0.899 47 H 0.113 0.887 48 H 0.048 0.952 49 H 0.059 0.941 50 H 0.073 0.927 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.038 -21.724 11.680 31.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.326 6.326 3 C -0.006 4.006 4 C 0.045 3.955 5 H 0.096 0.904 6 C -0.078 4.078 7 N -0.167 5.167 8 C -0.006 4.006 9 N -0.200 5.200 10 N -0.164 5.164 11 C -0.072 4.072 12 C -0.062 4.062 13 C -0.124 4.124 14 C -0.010 4.010 15 C -0.582 4.582 16 H 0.072 0.928 17 C -0.194 4.194 18 N -0.568 5.568 19 Si 0.784 3.216 20 H -0.202 1.202 21 H -0.205 1.205 22 H -0.190 1.190 23 N -0.171 5.171 24 C -0.081 4.081 25 C -0.109 4.109 26 C 0.034 3.966 27 H 0.097 0.903 28 C -0.197 4.197 29 O -0.302 6.302 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.115 0.885 33 H 0.080 0.920 34 H 0.103 0.897 35 H 0.074 0.926 36 H 0.116 0.884 37 H 0.111 0.889 38 H 0.122 0.878 39 H 0.072 0.928 40 H 0.058 0.942 41 H 0.015 0.985 42 H 0.027 0.973 43 H 0.073 0.927 44 H 0.126 0.874 45 H 0.129 0.871 46 H 0.119 0.881 47 H 0.131 0.869 48 H 0.067 0.933 49 H 0.078 0.922 50 H 0.092 0.908 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -19.864 -21.214 11.302 31.182 hybrid contribution 1.173 0.467 -0.479 1.350 sum -18.691 -20.747 10.823 29.949 Atomic orbital electron populations 1.22941 0.79232 1.03934 1.00938 1.87870 1.21542 1.27608 1.95628 1.22462 0.90299 0.85472 1.02326 1.22076 0.93674 0.91382 0.88338 0.90371 1.22573 0.83231 0.97848 1.04188 1.58938 1.09668 1.12996 1.35142 1.22687 0.82161 0.92274 1.03474 1.74433 1.25533 0.95356 1.24657 1.73913 0.97838 1.24289 1.20366 1.25097 0.98012 0.81442 1.02616 1.20143 0.87811 0.99199 0.99037 1.21350 0.97340 0.99940 0.93747 1.18987 0.92029 0.94440 0.95554 1.21655 1.07608 1.33801 0.95172 0.92823 1.25870 0.96995 0.95008 1.01532 1.70059 1.16592 1.35902 1.34244 0.85545 0.77453 0.78743 0.79899 1.20191 1.20468 1.19014 1.46204 1.06891 1.08929 1.55124 1.22581 0.88293 0.91942 1.05309 1.23320 1.03424 0.96803 0.87378 1.22329 0.80319 0.93144 1.00836 0.90306 1.21762 1.03224 1.01356 0.93373 1.88073 1.22416 1.81089 1.38575 0.93336 0.92858 0.88459 0.92021 0.89700 0.92590 0.88440 0.88880 0.87766 0.92815 0.94249 0.98507 0.97346 0.92742 0.87415 0.87148 0.88069 0.86853 0.93349 0.92174 0.90843 0.88468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.53 16 2 O -0.41 -7.34 10.67 -144.47 -1.54 -8.88 16 3 C 0.07 1.12 5.61 71.98 0.40 1.52 16 4 C 0.10 1.84 3.09 30.63 0.09 1.94 16 5 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 6 C 0.05 1.01 4.30 86.31 0.37 1.38 16 7 N -0.44 -9.60 4.77 -705.07 -3.37 -12.97 16 8 C 0.35 9.95 7.23 260.11 1.88 11.83 16 9 N -0.36 -12.57 11.31 -58.00 -0.66 -13.23 16 10 N -0.33 -12.51 12.18 -49.53 -0.60 -13.12 16 11 C 0.20 6.48 7.32 137.64 1.01 7.49 16 12 C -0.02 -0.72 5.43 29.85 0.16 -0.56 16 13 C -0.08 -3.40 5.14 30.60 0.16 -3.25 16 14 C 0.03 1.36 4.97 29.85 0.15 1.51 16 15 C -0.54 -30.56 9.11 25.60 0.23 -30.33 16 16 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 17 C 0.00 0.23 5.46 84.65 0.46 0.70 16 18 N -0.93 -55.08 13.29 21.45 0.28 -54.79 16 19 Si 0.96 43.95 29.54 68.60 2.03 45.98 16 20 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 21 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 22 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 23 N -0.48 -12.52 3.21 -538.17 -1.73 -14.25 16 24 C 0.06 0.95 9.19 127.77 1.17 2.12 16 25 C 0.02 0.28 4.73 86.31 0.41 0.69 16 26 C 0.09 1.30 3.43 30.63 0.10 1.40 16 27 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 28 C -0.14 -1.36 9.57 71.98 0.69 -0.67 16 29 O -0.38 -7.30 10.08 -144.47 -1.46 -8.76 16 30 H 0.05 0.47 8.14 -2.38 -0.02 0.45 16 31 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 34 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.10 2.12 8.05 -2.39 -0.02 2.10 16 37 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 38 H 0.10 2.80 7.92 -2.39 -0.02 2.78 16 39 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 42 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 43 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 44 H 0.11 1.11 7.82 -2.39 -0.02 1.09 16 45 H 0.11 1.36 7.59 -2.39 -0.02 1.34 16 46 H 0.10 1.69 7.88 -2.39 -0.02 1.67 16 47 H 0.11 1.32 5.33 -2.39 -0.01 1.31 16 48 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 49 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 50 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 51 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 Total: -1.00 -75.39 410.99 2.40 -72.99 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: 0.89 Total: 9.73 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: 8.54 Total: -2.70 kcal Atomic # 7 Polarization: -102.28 SS G_CDS: -6.07 Total: -108.35 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -3.00 Total: -17.64 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -75.39 2.40 -72.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121303774.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.946 kcal (2) G-P(sol) polarization free energy of solvation -75.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds