Wall clock time and date at job start Tue Mar 31 2020 22:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42892 * 113.99804 * 2 1 4 4 C 1.53004 * 109.47134 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47207 * 179.97438 * 4 3 2 6 6 N 1.46507 * 109.47305 * 180.02562 * 5 4 3 7 7 C 1.34260 * 125.75447 * 125.00053 * 6 5 4 8 8 C 1.38046 * 107.41709 * 180.02562 * 7 6 5 9 9 C 1.47419 * 126.41691 * 179.97438 * 8 7 6 10 10 O 1.21609 * 120.00047 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00415 * 180.02562 * 9 8 7 12 12 C 1.46495 * 120.00230 * 180.02562 * 11 9 8 13 13 H 1.09004 * 109.47062 * 324.99175 * 12 11 9 14 14 C 1.52999 * 109.47657 * 84.99077 * 12 11 9 15 15 C 1.53002 * 109.47317 * 204.99663 * 12 11 9 16 16 C 1.53003 * 109.47269 * 64.99221 * 15 12 11 17 17 H 1.09000 * 109.46953 * 305.00936 * 16 15 12 18 18 C 1.52996 * 109.47332 * 185.00423 * 16 15 12 19 19 N 1.46505 * 109.46807 * 65.00478 * 16 15 12 20 20 C 1.36931 * 119.99788 * 205.00000 * 19 16 15 21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 16 22 22 C 1.38817 * 119.99680 * 179.72358 * 20 19 16 23 23 N 1.31614 * 119.99888 * 0.27479 * 22 20 19 24 24 Si 1.86803 * 119.99862 * 180.27671 * 22 20 19 25 25 H 1.48508 * 109.46872 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47141 * 119.99997 * 24 22 20 27 27 H 1.48498 * 109.47018 * 240.00044 * 24 22 20 28 28 C 1.41291 * 107.16986 * 0.22641 * 8 7 6 29 29 N 1.30453 * 108.02033 * 359.61529 * 28 8 7 30 30 H 1.08999 * 109.47474 * 60.00201 * 1 2 3 31 31 H 1.09006 * 109.47230 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47090 * 299.99875 * 1 2 3 33 33 H 1.09002 * 109.47639 * 60.00071 * 3 2 1 34 34 H 1.08997 * 109.47363 * 299.99868 * 3 2 1 35 35 H 1.09004 * 109.46913 * 60.00117 * 4 3 2 36 36 H 1.08997 * 109.47003 * 300.00230 * 4 3 2 37 37 H 1.09002 * 109.47446 * 60.00286 * 5 4 3 38 38 H 1.08997 * 109.47483 * 300.00127 * 5 4 3 39 39 H 1.07997 * 126.29401 * 359.97438 * 7 6 5 40 40 H 0.97000 * 119.99724 * 359.97438 * 11 9 8 41 41 H 1.08991 * 109.47415 * 300.00577 * 14 12 11 42 42 H 1.09005 * 109.46583 * 60.00443 * 14 12 11 43 43 H 1.09001 * 109.47265 * 179.97438 * 14 12 11 44 44 H 1.09000 * 109.46766 * 304.99737 * 15 12 11 45 45 H 1.08992 * 109.47398 * 184.99831 * 15 12 11 46 46 H 1.08998 * 109.47019 * 59.99816 * 18 16 15 47 47 H 1.08998 * 109.47099 * 180.02562 * 18 16 15 48 48 H 1.09002 * 109.46807 * 300.00318 * 18 16 15 49 49 H 0.97000 * 119.99792 * 24.99795 * 19 16 15 50 50 H 0.97005 * 119.99715 * 179.97438 * 23 22 20 51 51 H 1.08000 * 125.99150 * 179.74556 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1577 2.5823 0.0000 6 7 5.6182 2.4667 0.0000 7 6 6.4495 3.0274 -0.8928 8 6 7.7361 2.6754 -0.5372 9 6 8.9747 3.0659 -1.2348 10 8 8.9186 3.7662 -2.2274 11 7 10.1693 2.6460 -0.7730 12 6 11.4002 3.0346 -1.4659 13 1 11.2139 3.0813 -2.5389 14 6 11.8547 4.4077 -0.9670 15 6 12.4928 2.0017 -1.1826 16 6 12.0929 0.6562 -1.7914 17 1 11.1117 0.3650 -1.4166 18 6 13.1232 -0.4059 -1.4026 19 7 12.0422 0.7763 -3.2507 20 6 11.2508 -0.0701 -3.9802 21 1 10.6636 -0.8260 -3.4800 22 6 11.1984 0.0475 -5.3624 23 7 11.9136 0.9690 -5.9720 24 14 10.1128 -1.1021 -6.3571 25 1 9.4169 -2.0416 -5.4413 26 1 9.1085 -0.3076 -7.1088 27 1 10.9506 -1.8715 -7.3117 28 6 7.6431 1.8658 0.6170 29 7 6.3818 1.7528 0.9302 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8463 -0.8900 35 1 3.8574 0.6436 -0.8892 36 1 3.8567 0.6439 0.8908 37 1 3.8358 3.1238 0.8895 38 1 3.8364 3.1227 -0.8904 39 1 6.1641 3.6405 -1.7349 40 1 10.2140 2.0872 0.0185 41 1 11.0764 5.1435 -1.1688 42 1 12.0410 4.3609 0.1060 43 1 12.7708 4.6965 -1.4822 44 1 12.6170 1.8904 -0.1054 45 1 13.4317 2.3356 -1.6240 46 1 13.1609 -0.4953 -0.3170 47 1 12.8385 -1.3644 -1.8368 48 1 14.1044 -0.1147 -1.7775 49 1 12.5693 1.4555 -3.6999 50 1 11.8772 1.0509 -6.9379 51 1 8.4713 1.4204 1.1482 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135888126.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:14 Heat of formation + Delta-G solvation = -33.669860 kcal Electronic energy + Delta-G solvation = -29346.758607 eV Core-core repulsion = 25281.940543 eV Total energy + Delta-G solvation = -4064.818064 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -42.36437 -40.36863 -38.99702 -38.17280 -35.97068 -35.82714 -33.97065 -32.54162 -31.99626 -30.81154 -30.31702 -28.03167 -27.53715 -26.24655 -25.63681 -24.18775 -23.27328 -22.14831 -21.61818 -21.15049 -20.96416 -19.31760 -18.89324 -17.45024 -17.25228 -17.13814 -16.86782 -16.56517 -16.45809 -15.84089 -15.64939 -15.60809 -15.48081 -15.20671 -14.87614 -14.74607 -14.47478 -14.16174 -13.79660 -13.55801 -13.34315 -13.29419 -13.25109 -13.09790 -12.92311 -12.78043 -12.76178 -12.62585 -12.31074 -12.17335 -12.13571 -12.10595 -11.85392 -11.76404 -11.51446 -11.36383 -10.90202 -10.77947 -10.65920 -10.58007 -9.99640 -9.57804 -8.90985 -7.89603 -5.14097 0.55066 1.20521 1.34706 1.42617 1.44393 1.52781 2.44657 2.57809 2.61626 2.74695 3.44826 3.49526 3.78940 3.83359 3.89932 3.99102 4.04758 4.09414 4.16892 4.21037 4.24882 4.33784 4.42529 4.47294 4.47907 4.53118 4.54734 4.61270 4.73057 4.80539 4.84544 4.84978 4.89854 4.94624 5.00290 5.07092 5.10142 5.15061 5.30971 5.39944 5.45235 5.49239 5.56023 5.67973 5.77786 5.84500 6.20498 6.34166 6.51013 6.80855 7.39682 7.50247 8.20837 8.40322 9.34482 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.009005 B = 0.002782 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3108.598609 B =10062.818600 C =11967.273234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.424 6.424 3 C 0.065 3.935 4 C -0.126 4.126 5 C 0.130 3.870 6 N -0.357 5.357 7 C 0.127 3.873 8 C -0.311 4.311 9 C 0.588 3.412 10 O -0.599 6.599 11 N -0.700 5.700 12 C 0.148 3.852 13 H 0.045 0.955 14 C -0.150 4.150 15 C -0.117 4.117 16 C 0.163 3.837 17 H 0.043 0.957 18 C -0.156 4.156 19 N -0.730 5.730 20 C -0.220 4.220 21 H 0.067 0.933 22 C -0.080 4.080 23 N -0.968 5.968 24 Si 0.959 3.041 25 H -0.269 1.269 26 H -0.300 1.300 27 H -0.292 1.292 28 C 0.088 3.912 29 N -0.314 5.314 30 H 0.052 0.948 31 H 0.090 0.910 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.113 0.887 38 H 0.130 0.870 39 H 0.200 0.800 40 H 0.410 0.590 41 H 0.037 0.963 42 H 0.081 0.919 43 H 0.068 0.932 44 H 0.107 0.893 45 H 0.075 0.925 46 H 0.077 0.923 47 H 0.028 0.972 48 H 0.042 0.958 49 H 0.370 0.630 50 H 0.247 0.753 51 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.158 5.159 20.474 27.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.344 6.344 3 C -0.012 4.012 4 C -0.165 4.165 5 C 0.010 3.990 6 N -0.136 5.136 7 C -0.025 4.025 8 C -0.326 4.326 9 C 0.377 3.623 10 O -0.481 6.481 11 N -0.351 5.351 12 C 0.044 3.956 13 H 0.064 0.936 14 C -0.208 4.208 15 C -0.155 4.155 16 C 0.055 3.945 17 H 0.061 0.939 18 C -0.216 4.216 19 N -0.371 5.371 20 C -0.352 4.352 21 H 0.085 0.915 22 C -0.272 4.272 23 N -0.620 5.620 24 Si 0.790 3.210 25 H -0.194 1.194 26 H -0.228 1.228 27 H -0.219 1.219 28 C -0.099 4.099 29 N -0.134 5.134 30 H 0.071 0.929 31 H 0.109 0.891 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.131 0.869 38 H 0.148 0.852 39 H 0.217 0.783 40 H 0.246 0.754 41 H 0.056 0.944 42 H 0.100 0.900 43 H 0.087 0.913 44 H 0.126 0.874 45 H 0.094 0.906 46 H 0.096 0.904 47 H 0.047 0.953 48 H 0.061 0.939 49 H 0.202 0.798 50 H 0.056 0.944 51 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -18.218 4.830 20.616 27.933 hybrid contribution 0.202 -0.168 -1.765 1.785 sum -18.016 4.662 18.851 26.489 Atomic orbital electron populations 1.22922 0.79171 1.03725 1.01153 1.87850 1.21763 1.29089 1.95699 1.22456 0.91755 0.84706 1.02239 1.21649 0.94814 0.96612 1.03393 1.22004 0.71883 0.98079 1.06999 1.48706 1.07816 1.37230 1.19833 1.23249 0.89404 0.95598 0.94294 1.20291 0.93380 1.14539 1.04415 1.17599 0.83586 0.78662 0.82439 1.90754 1.87912 1.41303 1.28136 1.45581 1.04922 1.53159 1.31441 1.20803 0.83776 0.94646 0.96408 0.93619 1.22076 1.00906 0.95378 1.02485 1.22072 0.97411 0.93506 1.02549 1.20537 0.96737 0.94086 0.83177 0.93916 1.22303 0.99431 0.99026 1.00798 1.42599 1.53077 1.39461 1.01926 1.19514 1.17216 1.09232 0.89276 0.91456 1.25410 1.02642 1.01195 0.97922 1.69805 1.46507 1.37773 1.07956 0.85258 0.78304 0.78463 0.78973 1.19377 1.22799 1.21918 1.24450 0.95441 0.95641 0.94416 1.77081 1.03863 1.18012 1.14468 0.92938 0.89120 0.92651 0.90959 0.91222 0.92420 0.91250 0.86900 0.85207 0.78322 0.75388 0.94414 0.89964 0.91277 0.87427 0.90594 0.90409 0.95318 0.93925 0.79831 0.94444 0.76729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.42 -7.41 10.70 -148.98 -1.59 -9.00 16 3 C 0.07 0.76 5.94 71.98 0.43 1.19 16 4 C -0.13 -1.92 5.76 30.59 0.18 -1.75 16 5 C 0.13 1.56 6.49 86.38 0.56 2.12 16 6 N -0.36 -7.41 3.65 -346.29 -1.26 -8.67 16 7 C 0.13 3.09 11.25 84.28 0.95 4.03 16 8 C -0.31 -8.78 6.13 -20.15 -0.12 -8.91 16 9 C 0.59 20.67 7.78 86.66 0.67 21.35 16 10 O -0.60 -27.01 16.56 -4.06 -0.07 -27.08 16 11 N -0.70 -20.63 4.44 -445.81 -1.98 -22.61 16 12 C 0.15 4.85 2.52 44.99 0.11 4.97 16 13 H 0.05 2.08 7.05 -2.38 -0.02 2.06 16 14 C -0.15 -4.04 9.48 71.98 0.68 -3.36 16 15 C -0.12 -3.35 4.29 30.60 0.13 -3.22 16 16 C 0.16 6.03 2.84 44.99 0.13 6.16 16 17 H 0.04 1.62 7.56 -2.39 -0.02 1.61 16 18 C -0.16 -5.15 9.49 71.98 0.68 -4.46 16 19 N -0.73 -36.88 4.49 -322.93 -1.45 -38.33 16 20 C -0.22 -12.59 9.93 84.04 0.83 -11.76 16 21 H 0.07 3.78 7.83 -2.91 -0.02 3.76 16 22 C -0.08 -4.81 5.50 84.86 0.47 -4.34 16 23 N -0.97 -62.00 13.06 21.65 0.28 -61.72 16 24 Si 0.96 48.98 29.55 68.60 2.03 51.01 16 25 H -0.27 -12.98 7.11 99.48 0.71 -12.28 16 26 H -0.30 -15.56 7.11 99.48 0.71 -14.85 16 27 H -0.29 -14.71 7.11 99.48 0.71 -14.00 16 28 C 0.09 2.03 11.50 85.65 0.99 3.01 16 29 N -0.31 -7.53 12.33 -56.27 -0.69 -8.23 16 30 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 36 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.13 0.84 8.06 -2.39 -0.02 0.82 16 39 H 0.20 4.16 8.06 -2.91 -0.02 4.14 16 40 H 0.41 8.86 7.56 -92.71 -0.70 8.16 16 41 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 43 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 45 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 46 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 47 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 48 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.37 20.38 7.80 -92.71 -0.72 19.66 16 50 H 0.25 15.40 8.31 -92.70 -0.77 14.63 16 51 H 0.22 3.34 7.50 -2.91 -0.02 3.32 16 Total: -1.00 -84.58 426.01 2.69 -81.89 By element: Atomic # 1 Polarization: 36.70 SS G_CDS: -0.51 Total: 36.19 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: 7.94 Total: 6.54 kcal Atomic # 7 Polarization: -134.45 SS G_CDS: -5.10 Total: -139.55 kcal Atomic # 8 Polarization: -34.42 SS G_CDS: -1.66 Total: -36.08 kcal Atomic # 14 Polarization: 48.98 SS G_CDS: 2.03 Total: 51.01 kcal Total: -84.58 2.69 -81.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135888126.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.224 kcal (2) G-P(sol) polarization free energy of solvation -84.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds