Wall clock time and date at job start Tue Mar 31 2020 22:26:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.08997 * 109.47219 * 2 1
4 4 C 1.52996 * 109.47413 * 239.99428 * 2 1 3
5 5 C 1.52997 * 109.47131 * 174.99889 * 4 2 1
6 6 C 1.53006 * 109.47127 * 180.02562 * 5 4 2
7 7 C 1.52997 * 109.47127 * 180.02562 * 6 5 4
8 8 N 1.46496 * 109.46953 * 179.97438 * 7 6 5
9 9 C 1.36942 * 120.00106 * 179.97438 * 8 7 6
10 10 H 1.08004 * 119.99638 * 0.02562 * 9 8 7
11 11 C 1.38805 * 120.00269 * 179.97438 * 9 8 7
12 12 N 1.31615 * 120.00146 * 0.02562 * 11 9 8
13 13 Si 1.86799 * 120.00181 * 180.02562 * 11 9 8
14 14 H 1.48501 * 109.47144 * 0.02562 * 13 11 9
15 15 H 1.48500 * 109.47391 * 120.00172 * 13 11 9
16 16 H 1.48500 * 109.47521 * 240.00541 * 13 11 9
17 17 N 1.46502 * 109.46680 * 119.99620 * 2 1 3
18 18 C 1.34781 * 120.00059 * 274.99983 * 17 2 1
19 19 O 1.21277 * 119.99934 * 0.02562 * 18 17 2
20 20 C 1.50699 * 119.99755 * 180.02562 * 18 17 2
21 21 O 1.42908 * 109.46859 * 180.02562 * 20 18 17
22 22 C 1.42892 * 114.00036 * 180.02562 * 21 20 18
23 23 C 1.50699 * 109.47308 * 180.02562 * 22 21 20
24 24 N 1.30499 * 125.65382 * 90.02111 * 23 22 21
25 25 C 1.34127 * 109.25917 * 180.02562 * 24 23 22
26 26 C 1.34663 * 108.01954 * 0.02562 * 25 24 23
27 27 N 1.35048 * 125.64799 * 269.72146 * 23 22 21
28 28 C 1.46499 * 126.39893 * 359.97438 * 27 23 22
29 29 H 1.08992 * 109.47133 * 299.99981 * 1 2 3
30 30 H 1.08998 * 109.47095 * 60.00889 * 1 2 3
31 31 H 1.09010 * 109.47120 * 180.02562 * 1 2 3
32 32 H 1.09001 * 109.46993 * 54.99758 * 4 2 1
33 33 H 1.09004 * 109.47298 * 295.00173 * 4 2 1
34 34 H 1.09001 * 109.46832 * 60.00325 * 5 4 2
35 35 H 1.08993 * 109.47194 * 299.99846 * 5 4 2
36 36 H 1.09001 * 109.46801 * 300.00272 * 6 5 4
37 37 H 1.09001 * 109.46998 * 59.99868 * 6 5 4
38 38 H 1.08996 * 109.46952 * 300.00302 * 7 6 5
39 39 H 1.09001 * 109.46832 * 60.00321 * 7 6 5
40 40 H 0.96999 * 120.00356 * 0.02562 * 8 7 6
41 41 H 0.97000 * 120.00516 * 179.97438 * 12 11 9
42 42 H 0.96999 * 119.99931 * 95.00625 * 17 2 1
43 43 H 1.08993 * 109.47546 * 299.99667 * 20 18 17
44 44 H 1.09000 * 109.47454 * 60.00643 * 20 18 17
45 45 H 1.08999 * 109.47068 * 300.00053 * 22 21 20
46 46 H 1.09000 * 109.47177 * 59.99935 * 22 21 20
47 47 H 1.07998 * 125.98713 * 180.02562 * 25 24 23
48 48 H 1.07998 * 126.59040 * 180.02562 * 26 25 24
49 49 H 1.08996 * 109.47212 * 90.00236 * 28 27 23
50 50 H 1.09002 * 109.47166 * 210.00321 * 28 27 23
51 51 H 1.09001 * 109.47001 * 330.00602 * 28 27 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0401 -0.7213 -1.2491
5 6 3.5649 -0.6133 -1.3135
6 6 4.0749 -1.3342 -2.5631
7 6 5.5998 -1.2267 -2.6271
8 7 6.0881 -1.9174 -3.8232
9 6 7.4302 -1.9538 -4.0929
10 1 8.1287 -1.4736 -3.4235
11 6 7.8930 -2.6087 -5.2258
12 7 7.0419 -3.1943 -6.0413
13 14 9.7238 -2.6589 -5.5933
14 1 10.4623 -1.9317 -4.5298
15 1 10.1816 -4.0709 -5.6362
16 1 9.9832 -2.0144 -6.9058
17 7 2.0183 -0.6906 1.1963
18 6 2.1469 -0.0181 2.3572
19 8 1.8581 1.1585 2.4117
20 6 2.6497 -0.7284 3.5876
21 8 2.6971 0.1898 4.6817
22 6 3.1635 -0.3857 5.9036
23 6 3.1720 0.6658 6.9831
24 7 2.1808 0.9387 7.7869
25 6 2.5432 1.9290 8.6158
26 6 3.8067 2.2836 8.3138
27 7 4.2085 1.4780 7.2826
28 6 5.5169 1.4965 6.6239
29 1 -0.3633 0.5138 0.8899
30 1 -0.3633 0.5137 -0.8900
31 1 -0.3634 -1.0278 0.0005
32 1 1.6054 -0.2619 -2.1369
33 1 1.7517 -1.7716 -1.2054
34 1 3.9994 -1.0728 -0.4257
35 1 3.8532 0.4369 -1.3573
36 1 3.7865 -2.3844 -2.5197
37 1 3.6403 -0.8744 -3.4506
38 1 5.8885 -0.1765 -2.6701
39 1 6.0340 -1.6869 -1.7395
40 1 5.4608 -2.3484 -4.4245
41 1 7.3652 -3.6516 -6.8332
42 1 2.2490 -1.6317 1.1527
43 1 1.9775 -1.5506 3.8327
44 1 3.6491 -1.1201 3.3981
45 1 2.5025 -1.2014 6.1966
46 1 4.1738 -0.7697 5.7620
47 1 1.9293 2.3654 9.3897
48 1 4.3926 3.0518 8.7964
49 1 5.4926 2.1947 5.7872
50 1 6.2786 1.8110 7.3375
51 1 5.7531 0.4977 6.2568
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001171437250.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:26:32
Heat of formation + Delta-G solvation = -20.448113 kcal
Electronic energy + Delta-G solvation = -28086.435287 eV
Core-core repulsion = 24022.190561 eV
Total energy + Delta-G solvation = -4064.244726 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 0.95 seconds
Orbital eigenvalues (eV)
-42.45059 -40.15782 -38.15960 -36.82967 -35.26253 -34.41327 -33.30545 -31.91946
-31.25012 -30.35268 -28.28158 -27.46926 -27.43694 -26.04984 -24.22953 -22.34001
-21.78551 -21.23113 -20.80036 -20.65759 -20.36844 -17.92886 -17.41225 -17.14974
-16.98210 -16.71091 -16.32518 -15.72770 -15.19175 -15.01390 -14.93241 -14.73152
-14.29472 -14.01340 -13.91211 -13.56486 -13.47737 -13.34230 -13.17359 -13.14355
-13.00861 -12.96635 -12.52140 -12.34967 -12.20661 -11.78760 -11.47805 -11.28535
-11.01736 -10.84234 -10.73275 -10.42740 -10.35470 -10.33145 -10.26302 -10.01265
-9.98642 -9.96210 -9.68990 -9.26858 -8.88062 -8.84871 -6.91915 -5.77273
-3.05717 1.47925 2.29364 2.39467 2.48227 2.87534 3.41985 3.47393
3.49836 3.60391 4.13605 4.23712 4.28270 4.42635 4.52857 4.58091
4.64710 4.69430 4.70449 4.75840 4.86170 4.90588 4.96501 4.96922
5.07170 5.24569 5.36182 5.39256 5.44370 5.53440 5.59862 5.67739
5.76711 5.84973 5.88225 5.94921 6.09244 6.19200 6.28195 6.33208
6.36646 6.37069 6.44233 6.47868 6.72294 6.87437 6.91449 7.26359
7.69499 7.71314 8.01056 8.42106 9.52917 10.12239 10.46689 11.45859
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.011544 B = 0.001705 C = 0.001518
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2424.824082 B =16423.153737 C =18445.327128
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.143 3.857
3 H 0.089 0.911
4 C -0.127 4.127
5 C -0.114 4.114
6 C -0.126 4.126
7 C 0.152 3.848
8 N -0.735 5.735
9 C -0.239 4.239
10 H 0.070 0.930
11 C -0.016 4.016
12 N -0.934 5.934
13 Si 0.907 3.093
14 H -0.281 1.281
15 H -0.291 1.291
16 H -0.291 1.291
17 N -0.721 5.721
18 C 0.515 3.485
19 O -0.519 6.519
20 C 0.043 3.957
21 O -0.356 6.356
22 C 0.149 3.851
23 C 0.202 3.798
24 N -0.471 5.471
25 C -0.028 4.028
26 C -0.050 4.050
27 N -0.449 5.449
28 C 0.069 3.931
29 H 0.059 0.941
30 H 0.067 0.933
31 H 0.057 0.943
32 H 0.080 0.920
33 H 0.069 0.931
34 H 0.059 0.941
35 H 0.061 0.939
36 H 0.060 0.940
37 H 0.061 0.939
38 H 0.016 0.984
39 H 0.015 0.985
40 H 0.383 0.617
41 H 0.254 0.746
42 H 0.401 0.599
43 H 0.084 0.916
44 H 0.084 0.916
45 H 0.086 0.914
46 H 0.068 0.932
47 H 0.173 0.827
48 H 0.177 0.823
49 H 0.083 0.917
50 H 0.088 0.912
51 H 0.087 0.913
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.443 5.932 27.697 30.189
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.222 4.222
2 C 0.039 3.961
3 H 0.107 0.893
4 C -0.165 4.165
5 C -0.152 4.152
6 C -0.164 4.164
7 C 0.025 3.975
8 N -0.379 5.379
9 C -0.370 4.370
10 H 0.088 0.912
11 C -0.212 4.212
12 N -0.583 5.583
13 Si 0.738 3.262
14 H -0.206 1.206
15 H -0.219 1.219
16 H -0.218 1.218
17 N -0.375 5.375
18 C 0.300 3.700
19 O -0.393 6.393
20 C -0.037 4.037
21 O -0.273 6.273
22 C 0.071 3.929
23 C -0.060 4.060
24 N -0.191 5.191
25 C -0.177 4.177
26 C -0.183 4.183
27 N -0.132 5.132
28 C -0.074 4.074
29 H 0.078 0.922
30 H 0.086 0.914
31 H 0.076 0.924
32 H 0.099 0.901
33 H 0.087 0.913
34 H 0.078 0.922
35 H 0.080 0.920
36 H 0.079 0.921
37 H 0.080 0.920
38 H 0.034 0.966
39 H 0.033 0.967
40 H 0.217 0.783
41 H 0.064 0.936
42 H 0.236 0.764
43 H 0.102 0.898
44 H 0.102 0.898
45 H 0.104 0.896
46 H 0.086 0.914
47 H 0.190 0.810
48 H 0.195 0.805
49 H 0.101 0.899
50 H 0.107 0.893
51 H 0.106 0.894
Dipole moment (debyes) X Y Z Total
from point charges -11.129 6.632 27.644 30.529
hybrid contribution 1.889 -0.442 -0.441 1.989
sum -9.241 6.190 27.203 29.389
Atomic orbital electron populations
1.22183 0.95292 1.02141 1.02601 1.21053 0.93804 0.97718 0.83532
0.89308 1.21944 0.96855 1.00977 0.96695 1.21520 0.93969 1.01110
0.98595 1.21732 0.97230 1.00280 0.97137 1.20645 0.91022 0.95310
0.90539 1.42396 1.05335 1.64970 1.25195 1.19302 0.83935 1.28315
1.05473 0.91186 1.24747 0.97727 1.00964 0.97712 1.69669 1.32687
1.40809 1.15128 0.86113 0.85073 0.77208 0.77783 1.20587 1.21866
1.21839 1.45988 1.67922 1.14174 1.09433 1.20133 0.78281 0.87509
0.84126 1.90749 1.48327 1.15706 1.84536 1.22257 1.02115 0.92644
0.86712 1.88098 1.87163 1.35153 1.16911 1.20503 0.99832 0.91406
0.81199 1.22565 0.84715 0.98443 1.00283 1.70208 1.26568 1.15793
1.06569 1.22346 0.94566 0.98429 1.02390 1.22795 0.98891 1.00935
0.95707 1.45287 1.13226 1.27642 1.27061 1.22127 0.81728 1.04633
0.98899 0.92219 0.91439 0.92419 0.90113 0.91259 0.92178 0.91991
0.92110 0.92025 0.96593 0.96686 0.78344 0.93581 0.76446 0.89766
0.89822 0.89597 0.91409 0.80999 0.80542 0.89850 0.89321 0.89395
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.45 9.48 37.16 0.35 -1.09 16
2 C 0.14 1.36 2.57 -67.93 -0.17 1.18 16
3 H 0.09 1.03 7.58 -51.93 -0.39 0.64 16
4 C -0.13 -1.17 4.75 -26.73 -0.13 -1.30 16
5 C -0.11 -1.33 5.10 -26.73 -0.14 -1.47 16
6 C -0.13 -1.93 5.33 -26.73 -0.14 -2.08 16
7 C 0.15 3.07 6.26 -4.05 -0.03 3.04 16
8 N -0.74 -18.94 5.60 -59.91 -0.34 -19.27 16
9 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16
10 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16
11 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16
12 N -0.93 -28.42 13.06 55.49 0.72 -27.70 16
13 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16
14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16
15 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16
16 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16
17 N -0.72 -6.11 4.53 -53.81 -0.24 -6.35 16
18 C 0.51 5.57 7.87 -10.98 -0.09 5.48 16
19 O -0.52 -8.19 16.16 -14.35 -0.23 -8.42 16
20 C 0.04 0.32 6.42 36.01 0.23 0.55 16
21 O -0.36 -3.84 9.86 -55.14 -0.54 -4.39 16
22 C 0.15 1.18 6.24 36.01 0.22 1.40 16
23 C 0.20 2.11 7.53 -155.41 -1.17 0.94 16
24 N -0.47 -5.81 11.25 -10.82 -0.12 -5.94 16
25 C -0.03 -0.27 11.87 -17.81 -0.21 -0.49 16
26 C -0.05 -0.39 11.58 -16.56 -0.19 -0.58 16
27 N -0.45 -3.75 3.15 -121.28 -0.38 -4.13 16
28 C 0.07 0.32 10.97 59.85 0.66 0.97 16
29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16
31 H 0.06 0.45 8.14 -51.92 -0.42 0.02 16
32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16
33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16
34 H 0.06 0.66 7.75 -51.93 -0.40 0.26 16
35 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16
36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16
37 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16
38 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16
39 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16
40 H 0.38 10.31 7.67 -40.82 -0.31 9.99 16
41 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16
42 H 0.40 2.33 8.60 -40.82 -0.35 1.98 16
43 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16
44 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16
45 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16
46 H 0.07 0.33 7.06 -51.93 -0.37 -0.04 16
47 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16
48 H 0.18 0.74 8.06 -52.49 -0.42 0.32 16
49 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16
50 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16
51 H 0.09 0.28 7.04 -51.93 -0.37 -0.08 16
LS Contribution 426.05 15.07 6.42 6.42
Total: -1.00 -39.12 426.05 -9.71 -48.83
By element:
Atomic # 1 Polarization: 13.36 SS G_CDS: -8.93 Total: 4.43 kcal
Atomic # 6 Polarization: 0.12 SS G_CDS: -1.05 Total: -0.93 kcal
Atomic # 7 Polarization: -63.03 SS G_CDS: -0.36 Total: -63.39 kcal
Atomic # 8 Polarization: -12.03 SS G_CDS: -0.78 Total: -12.80 kcal
Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal
Total LS contribution 6.42 Total: 6.42 kcal
Total: -39.12 -9.71 -48.83 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001171437250.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 28.379 kcal
(2) G-P(sol) polarization free energy of solvation -39.117 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.737 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.711 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.828 kcal
(6) G-S(sol) free energy of system = (1) + (5) -20.448 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.95 seconds