Wall clock time and date at job start Tue Mar 31 2020 22:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47219 * 2 1 4 4 C 1.52996 * 109.47413 * 239.99428 * 2 1 3 5 5 C 1.52997 * 109.47131 * 174.99889 * 4 2 1 6 6 C 1.53006 * 109.47127 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47127 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.46953 * 179.97438 * 7 6 5 9 9 C 1.36942 * 120.00106 * 179.97438 * 8 7 6 10 10 H 1.08004 * 119.99638 * 0.02562 * 9 8 7 11 11 C 1.38805 * 120.00269 * 179.97438 * 9 8 7 12 12 N 1.31615 * 120.00146 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00181 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47144 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47391 * 120.00172 * 13 11 9 16 16 H 1.48500 * 109.47521 * 240.00541 * 13 11 9 17 17 N 1.46502 * 109.46680 * 119.99620 * 2 1 3 18 18 C 1.34781 * 120.00059 * 274.99983 * 17 2 1 19 19 O 1.21277 * 119.99934 * 0.02562 * 18 17 2 20 20 C 1.50699 * 119.99755 * 180.02562 * 18 17 2 21 21 O 1.42908 * 109.46859 * 180.02562 * 20 18 17 22 22 C 1.42892 * 114.00036 * 180.02562 * 21 20 18 23 23 C 1.50699 * 109.47308 * 180.02562 * 22 21 20 24 24 N 1.30499 * 125.65382 * 90.02111 * 23 22 21 25 25 C 1.34127 * 109.25917 * 180.02562 * 24 23 22 26 26 C 1.34663 * 108.01954 * 0.02562 * 25 24 23 27 27 N 1.35048 * 125.64799 * 269.72146 * 23 22 21 28 28 C 1.46499 * 126.39893 * 359.97438 * 27 23 22 29 29 H 1.08992 * 109.47133 * 299.99981 * 1 2 3 30 30 H 1.08998 * 109.47095 * 60.00889 * 1 2 3 31 31 H 1.09010 * 109.47120 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46993 * 54.99758 * 4 2 1 33 33 H 1.09004 * 109.47298 * 295.00173 * 4 2 1 34 34 H 1.09001 * 109.46832 * 60.00325 * 5 4 2 35 35 H 1.08993 * 109.47194 * 299.99846 * 5 4 2 36 36 H 1.09001 * 109.46801 * 300.00272 * 6 5 4 37 37 H 1.09001 * 109.46998 * 59.99868 * 6 5 4 38 38 H 1.08996 * 109.46952 * 300.00302 * 7 6 5 39 39 H 1.09001 * 109.46832 * 60.00321 * 7 6 5 40 40 H 0.96999 * 120.00356 * 0.02562 * 8 7 6 41 41 H 0.97000 * 120.00516 * 179.97438 * 12 11 9 42 42 H 0.96999 * 119.99931 * 95.00625 * 17 2 1 43 43 H 1.08993 * 109.47546 * 299.99667 * 20 18 17 44 44 H 1.09000 * 109.47454 * 60.00643 * 20 18 17 45 45 H 1.08999 * 109.47068 * 300.00053 * 22 21 20 46 46 H 1.09000 * 109.47177 * 59.99935 * 22 21 20 47 47 H 1.07998 * 125.98713 * 180.02562 * 25 24 23 48 48 H 1.07998 * 126.59040 * 180.02562 * 26 25 24 49 49 H 1.08996 * 109.47212 * 90.00236 * 28 27 23 50 50 H 1.09002 * 109.47166 * 210.00321 * 28 27 23 51 51 H 1.09001 * 109.47001 * 330.00602 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5649 -0.6133 -1.3135 6 6 4.0749 -1.3342 -2.5631 7 6 5.5998 -1.2267 -2.6271 8 7 6.0881 -1.9174 -3.8232 9 6 7.4302 -1.9538 -4.0929 10 1 8.1287 -1.4736 -3.4235 11 6 7.8930 -2.6087 -5.2258 12 7 7.0419 -3.1943 -6.0413 13 14 9.7238 -2.6589 -5.5933 14 1 10.4623 -1.9317 -4.5298 15 1 10.1816 -4.0709 -5.6362 16 1 9.9832 -2.0144 -6.9058 17 7 2.0183 -0.6906 1.1963 18 6 2.1469 -0.0181 2.3572 19 8 1.8581 1.1585 2.4117 20 6 2.6497 -0.7284 3.5876 21 8 2.6971 0.1898 4.6817 22 6 3.1635 -0.3857 5.9036 23 6 3.1720 0.6658 6.9831 24 7 2.1808 0.9387 7.7869 25 6 2.5432 1.9290 8.6158 26 6 3.8067 2.2836 8.3138 27 7 4.2085 1.4780 7.2826 28 6 5.5169 1.4965 6.6239 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3634 -1.0278 0.0005 32 1 1.6054 -0.2619 -2.1369 33 1 1.7517 -1.7716 -1.2054 34 1 3.9994 -1.0728 -0.4257 35 1 3.8532 0.4369 -1.3573 36 1 3.7865 -2.3844 -2.5197 37 1 3.6403 -0.8744 -3.4506 38 1 5.8885 -0.1765 -2.6701 39 1 6.0340 -1.6869 -1.7395 40 1 5.4608 -2.3484 -4.4245 41 1 7.3652 -3.6516 -6.8332 42 1 2.2490 -1.6317 1.1527 43 1 1.9775 -1.5506 3.8327 44 1 3.6491 -1.1201 3.3981 45 1 2.5025 -1.2014 6.1966 46 1 4.1738 -0.7697 5.7620 47 1 1.9293 2.3654 9.3897 48 1 4.3926 3.0518 8.7964 49 1 5.4926 2.1947 5.7872 50 1 6.2786 1.8110 7.3375 51 1 5.7531 0.4977 6.2568 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171437250.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:32 Heat of formation + Delta-G solvation = -20.448113 kcal Electronic energy + Delta-G solvation = -28086.435287 eV Core-core repulsion = 24022.190561 eV Total energy + Delta-G solvation = -4064.244726 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.45059 -40.15782 -38.15960 -36.82967 -35.26253 -34.41327 -33.30545 -31.91946 -31.25012 -30.35268 -28.28158 -27.46926 -27.43694 -26.04984 -24.22953 -22.34001 -21.78551 -21.23113 -20.80036 -20.65759 -20.36844 -17.92886 -17.41225 -17.14974 -16.98210 -16.71091 -16.32518 -15.72770 -15.19175 -15.01390 -14.93241 -14.73152 -14.29472 -14.01340 -13.91211 -13.56486 -13.47737 -13.34230 -13.17359 -13.14355 -13.00861 -12.96635 -12.52140 -12.34967 -12.20661 -11.78760 -11.47805 -11.28535 -11.01736 -10.84234 -10.73275 -10.42740 -10.35470 -10.33145 -10.26302 -10.01265 -9.98642 -9.96210 -9.68990 -9.26858 -8.88062 -8.84871 -6.91915 -5.77273 -3.05717 1.47925 2.29364 2.39467 2.48227 2.87534 3.41985 3.47393 3.49836 3.60391 4.13605 4.23712 4.28270 4.42635 4.52857 4.58091 4.64710 4.69430 4.70449 4.75840 4.86170 4.90588 4.96501 4.96922 5.07170 5.24569 5.36182 5.39256 5.44370 5.53440 5.59862 5.67739 5.76711 5.84973 5.88225 5.94921 6.09244 6.19200 6.28195 6.33208 6.36646 6.37069 6.44233 6.47868 6.72294 6.87437 6.91449 7.26359 7.69499 7.71314 8.01056 8.42106 9.52917 10.12239 10.46689 11.45859 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011544 B = 0.001705 C = 0.001518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.824082 B =16423.153737 C =18445.327128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.143 3.857 3 H 0.089 0.911 4 C -0.127 4.127 5 C -0.114 4.114 6 C -0.126 4.126 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.239 4.239 10 H 0.070 0.930 11 C -0.016 4.016 12 N -0.934 5.934 13 Si 0.907 3.093 14 H -0.281 1.281 15 H -0.291 1.291 16 H -0.291 1.291 17 N -0.721 5.721 18 C 0.515 3.485 19 O -0.519 6.519 20 C 0.043 3.957 21 O -0.356 6.356 22 C 0.149 3.851 23 C 0.202 3.798 24 N -0.471 5.471 25 C -0.028 4.028 26 C -0.050 4.050 27 N -0.449 5.449 28 C 0.069 3.931 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.016 0.984 39 H 0.015 0.985 40 H 0.383 0.617 41 H 0.254 0.746 42 H 0.401 0.599 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.068 0.932 47 H 0.173 0.827 48 H 0.177 0.823 49 H 0.083 0.917 50 H 0.088 0.912 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.443 5.932 27.697 30.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.039 3.961 3 H 0.107 0.893 4 C -0.165 4.165 5 C -0.152 4.152 6 C -0.164 4.164 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.370 4.370 10 H 0.088 0.912 11 C -0.212 4.212 12 N -0.583 5.583 13 Si 0.738 3.262 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.218 1.218 17 N -0.375 5.375 18 C 0.300 3.700 19 O -0.393 6.393 20 C -0.037 4.037 21 O -0.273 6.273 22 C 0.071 3.929 23 C -0.060 4.060 24 N -0.191 5.191 25 C -0.177 4.177 26 C -0.183 4.183 27 N -0.132 5.132 28 C -0.074 4.074 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.034 0.966 39 H 0.033 0.967 40 H 0.217 0.783 41 H 0.064 0.936 42 H 0.236 0.764 43 H 0.102 0.898 44 H 0.102 0.898 45 H 0.104 0.896 46 H 0.086 0.914 47 H 0.190 0.810 48 H 0.195 0.805 49 H 0.101 0.899 50 H 0.107 0.893 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.129 6.632 27.644 30.529 hybrid contribution 1.889 -0.442 -0.441 1.989 sum -9.241 6.190 27.203 29.389 Atomic orbital electron populations 1.22183 0.95292 1.02141 1.02601 1.21053 0.93804 0.97718 0.83532 0.89308 1.21944 0.96855 1.00977 0.96695 1.21520 0.93969 1.01110 0.98595 1.21732 0.97230 1.00280 0.97137 1.20645 0.91022 0.95310 0.90539 1.42396 1.05335 1.64970 1.25195 1.19302 0.83935 1.28315 1.05473 0.91186 1.24747 0.97727 1.00964 0.97712 1.69669 1.32687 1.40809 1.15128 0.86113 0.85073 0.77208 0.77783 1.20587 1.21866 1.21839 1.45988 1.67922 1.14174 1.09433 1.20133 0.78281 0.87509 0.84126 1.90749 1.48327 1.15706 1.84536 1.22257 1.02115 0.92644 0.86712 1.88098 1.87163 1.35153 1.16911 1.20503 0.99832 0.91406 0.81199 1.22565 0.84715 0.98443 1.00283 1.70208 1.26568 1.15793 1.06569 1.22346 0.94566 0.98429 1.02390 1.22795 0.98891 1.00935 0.95707 1.45287 1.13226 1.27642 1.27061 1.22127 0.81728 1.04633 0.98899 0.92219 0.91439 0.92419 0.90113 0.91259 0.92178 0.91991 0.92110 0.92025 0.96593 0.96686 0.78344 0.93581 0.76446 0.89766 0.89822 0.89597 0.91409 0.80999 0.80542 0.89850 0.89321 0.89395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 9.48 37.16 0.35 -1.09 16 2 C 0.14 1.36 2.57 -67.93 -0.17 1.18 16 3 H 0.09 1.03 7.58 -51.93 -0.39 0.64 16 4 C -0.13 -1.17 4.75 -26.73 -0.13 -1.30 16 5 C -0.11 -1.33 5.10 -26.73 -0.14 -1.47 16 6 C -0.13 -1.93 5.33 -26.73 -0.14 -2.08 16 7 C 0.15 3.07 6.26 -4.05 -0.03 3.04 16 8 N -0.74 -18.94 5.60 -59.91 -0.34 -19.27 16 9 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 10 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 11 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 12 N -0.93 -28.42 13.06 55.49 0.72 -27.70 16 13 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 16 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 17 N -0.72 -6.11 4.53 -53.81 -0.24 -6.35 16 18 C 0.51 5.57 7.87 -10.98 -0.09 5.48 16 19 O -0.52 -8.19 16.16 -14.35 -0.23 -8.42 16 20 C 0.04 0.32 6.42 36.01 0.23 0.55 16 21 O -0.36 -3.84 9.86 -55.14 -0.54 -4.39 16 22 C 0.15 1.18 6.24 36.01 0.22 1.40 16 23 C 0.20 2.11 7.53 -155.41 -1.17 0.94 16 24 N -0.47 -5.81 11.25 -10.82 -0.12 -5.94 16 25 C -0.03 -0.27 11.87 -17.81 -0.21 -0.49 16 26 C -0.05 -0.39 11.58 -16.56 -0.19 -0.58 16 27 N -0.45 -3.75 3.15 -121.28 -0.38 -4.13 16 28 C 0.07 0.32 10.97 59.85 0.66 0.97 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.45 8.14 -51.92 -0.42 0.02 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.66 7.75 -51.93 -0.40 0.26 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 40 H 0.38 10.31 7.67 -40.82 -0.31 9.99 16 41 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.40 2.33 8.60 -40.82 -0.35 1.98 16 43 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.07 0.33 7.06 -51.93 -0.37 -0.04 16 47 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16 48 H 0.18 0.74 8.06 -52.49 -0.42 0.32 16 49 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 50 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 51 H 0.09 0.28 7.04 -51.93 -0.37 -0.08 16 LS Contribution 426.05 15.07 6.42 6.42 Total: -1.00 -39.12 426.05 -9.71 -48.83 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -8.93 Total: 4.43 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -1.05 Total: -0.93 kcal Atomic # 7 Polarization: -63.03 SS G_CDS: -0.36 Total: -63.39 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: -0.78 Total: -12.80 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 6.42 Total: 6.42 kcal Total: -39.12 -9.71 -48.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171437250.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.379 kcal (2) G-P(sol) polarization free energy of solvation -39.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds