Wall clock time and date at job start Tue Mar 31 2020 22:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47219 * 2 1 4 4 C 1.52996 * 109.47413 * 239.99428 * 2 1 3 5 5 C 1.52997 * 109.47131 * 174.99889 * 4 2 1 6 6 C 1.53006 * 109.47127 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47127 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.46953 * 179.97438 * 7 6 5 9 9 C 1.36942 * 120.00106 * 179.97438 * 8 7 6 10 10 H 1.08004 * 119.99638 * 0.02562 * 9 8 7 11 11 C 1.38805 * 120.00269 * 179.97438 * 9 8 7 12 12 N 1.31615 * 120.00146 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00181 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47144 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47391 * 120.00172 * 13 11 9 16 16 H 1.48500 * 109.47521 * 240.00541 * 13 11 9 17 17 N 1.46502 * 109.46680 * 119.99620 * 2 1 3 18 18 C 1.34781 * 120.00059 * 274.99983 * 17 2 1 19 19 O 1.21277 * 119.99934 * 0.02562 * 18 17 2 20 20 C 1.50699 * 119.99755 * 180.02562 * 18 17 2 21 21 O 1.42908 * 109.46859 * 180.02562 * 20 18 17 22 22 C 1.42892 * 114.00036 * 180.02562 * 21 20 18 23 23 C 1.50699 * 109.47308 * 180.02562 * 22 21 20 24 24 N 1.30499 * 125.65382 * 90.02111 * 23 22 21 25 25 C 1.34127 * 109.25917 * 180.02562 * 24 23 22 26 26 C 1.34663 * 108.01954 * 0.02562 * 25 24 23 27 27 N 1.35048 * 125.64799 * 269.72146 * 23 22 21 28 28 C 1.46499 * 126.39893 * 359.97438 * 27 23 22 29 29 H 1.08992 * 109.47133 * 299.99981 * 1 2 3 30 30 H 1.08998 * 109.47095 * 60.00889 * 1 2 3 31 31 H 1.09010 * 109.47120 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46993 * 54.99758 * 4 2 1 33 33 H 1.09004 * 109.47298 * 295.00173 * 4 2 1 34 34 H 1.09001 * 109.46832 * 60.00325 * 5 4 2 35 35 H 1.08993 * 109.47194 * 299.99846 * 5 4 2 36 36 H 1.09001 * 109.46801 * 300.00272 * 6 5 4 37 37 H 1.09001 * 109.46998 * 59.99868 * 6 5 4 38 38 H 1.08996 * 109.46952 * 300.00302 * 7 6 5 39 39 H 1.09001 * 109.46832 * 60.00321 * 7 6 5 40 40 H 0.96999 * 120.00356 * 0.02562 * 8 7 6 41 41 H 0.97000 * 120.00516 * 179.97438 * 12 11 9 42 42 H 0.96999 * 119.99931 * 95.00625 * 17 2 1 43 43 H 1.08993 * 109.47546 * 299.99667 * 20 18 17 44 44 H 1.09000 * 109.47454 * 60.00643 * 20 18 17 45 45 H 1.08999 * 109.47068 * 300.00053 * 22 21 20 46 46 H 1.09000 * 109.47177 * 59.99935 * 22 21 20 47 47 H 1.07998 * 125.98713 * 180.02562 * 25 24 23 48 48 H 1.07998 * 126.59040 * 180.02562 * 26 25 24 49 49 H 1.08996 * 109.47212 * 90.00236 * 28 27 23 50 50 H 1.09002 * 109.47166 * 210.00321 * 28 27 23 51 51 H 1.09001 * 109.47001 * 330.00602 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5649 -0.6133 -1.3135 6 6 4.0749 -1.3342 -2.5631 7 6 5.5998 -1.2267 -2.6271 8 7 6.0881 -1.9174 -3.8232 9 6 7.4302 -1.9538 -4.0929 10 1 8.1287 -1.4736 -3.4235 11 6 7.8930 -2.6087 -5.2258 12 7 7.0419 -3.1943 -6.0413 13 14 9.7238 -2.6589 -5.5933 14 1 10.4623 -1.9317 -4.5298 15 1 10.1816 -4.0709 -5.6362 16 1 9.9832 -2.0144 -6.9058 17 7 2.0183 -0.6906 1.1963 18 6 2.1469 -0.0181 2.3572 19 8 1.8581 1.1585 2.4117 20 6 2.6497 -0.7284 3.5876 21 8 2.6971 0.1898 4.6817 22 6 3.1635 -0.3857 5.9036 23 6 3.1720 0.6658 6.9831 24 7 2.1808 0.9387 7.7869 25 6 2.5432 1.9290 8.6158 26 6 3.8067 2.2836 8.3138 27 7 4.2085 1.4780 7.2826 28 6 5.5169 1.4965 6.6239 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3634 -1.0278 0.0005 32 1 1.6054 -0.2619 -2.1369 33 1 1.7517 -1.7716 -1.2054 34 1 3.9994 -1.0728 -0.4257 35 1 3.8532 0.4369 -1.3573 36 1 3.7865 -2.3844 -2.5197 37 1 3.6403 -0.8744 -3.4506 38 1 5.8885 -0.1765 -2.6701 39 1 6.0340 -1.6869 -1.7395 40 1 5.4608 -2.3484 -4.4245 41 1 7.3652 -3.6516 -6.8332 42 1 2.2490 -1.6317 1.1527 43 1 1.9775 -1.5506 3.8327 44 1 3.6491 -1.1201 3.3981 45 1 2.5025 -1.2014 6.1966 46 1 4.1738 -0.7697 5.7620 47 1 1.9293 2.3654 9.3897 48 1 4.3926 3.0518 8.7964 49 1 5.4926 2.1947 5.7872 50 1 6.2786 1.8110 7.3375 51 1 5.7531 0.4977 6.2568 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171437250.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:31 Heat of formation + Delta-G solvation = -47.329293 kcal Electronic energy + Delta-G solvation = -28087.600943 eV Core-core repulsion = 24022.190561 eV Total energy + Delta-G solvation = -4065.410381 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.06164 -40.96423 -38.84016 -37.86858 -36.77729 -34.97909 -34.77199 -33.11869 -32.14783 -31.60303 -28.94286 -28.77660 -27.92244 -26.63863 -25.89996 -23.75953 -22.39677 -22.20406 -21.96797 -21.53382 -20.99760 -19.12177 -18.56665 -18.04597 -17.77881 -17.33265 -17.06236 -16.68033 -16.37723 -16.11332 -15.81733 -15.64944 -15.37089 -15.28498 -14.93802 -14.67881 -14.51908 -14.17239 -14.13854 -14.02212 -13.81819 -13.50836 -13.31571 -13.06867 -13.02496 -12.89890 -12.85455 -12.78936 -12.45340 -12.25769 -12.10677 -11.88192 -11.80343 -11.47246 -11.38641 -11.04962 -10.94498 -10.85002 -10.83219 -10.61286 -10.07913 -9.47833 -9.00831 -7.96542 -5.25645 0.86857 1.47011 1.48006 1.58160 1.60629 1.72553 1.91401 2.17982 2.55337 3.02362 3.37142 3.54899 3.61901 3.76778 3.86396 3.92315 4.04334 4.07627 4.14924 4.17237 4.24576 4.28171 4.35489 4.37395 4.39984 4.44004 4.54527 4.61797 4.66114 4.67183 4.76943 4.79410 4.89135 4.94104 5.00047 5.03666 5.13619 5.27126 5.28089 5.32710 5.45922 5.46922 5.54755 5.59162 5.77434 5.91407 6.16675 6.26595 6.59589 7.06320 7.28004 7.32303 8.09462 8.32377 9.27249 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011544 B = 0.001705 C = 0.001518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.824082 B =16423.153737 C =18445.327128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.145 3.855 3 H 0.063 0.937 4 C -0.115 4.115 5 C -0.105 4.105 6 C -0.113 4.113 7 C 0.148 3.852 8 N -0.749 5.749 9 C -0.249 4.249 10 H 0.074 0.926 11 C -0.076 4.076 12 N -0.969 5.969 13 Si 0.975 3.025 14 H -0.266 1.266 15 H -0.291 1.291 16 H -0.293 1.293 17 N -0.707 5.707 18 C 0.509 3.491 19 O -0.579 6.579 20 C 0.044 3.956 21 O -0.394 6.394 22 C 0.149 3.851 23 C 0.176 3.824 24 N -0.518 5.518 25 C -0.061 4.061 26 C -0.042 4.042 27 N -0.451 5.451 28 C 0.062 3.938 29 H 0.038 0.962 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.052 0.948 36 H 0.065 0.935 37 H 0.055 0.945 38 H 0.011 0.989 39 H 0.021 0.979 40 H 0.374 0.626 41 H 0.252 0.748 42 H 0.418 0.582 43 H 0.114 0.886 44 H 0.117 0.883 45 H 0.094 0.906 46 H 0.101 0.899 47 H 0.186 0.814 48 H 0.212 0.788 49 H 0.077 0.923 50 H 0.113 0.887 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.234 5.086 28.584 30.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.041 3.959 3 H 0.082 0.918 4 C -0.153 4.153 5 C -0.143 4.143 6 C -0.151 4.151 7 C 0.021 3.979 8 N -0.392 5.392 9 C -0.381 4.381 10 H 0.092 0.908 11 C -0.268 4.268 12 N -0.620 5.620 13 Si 0.804 3.196 14 H -0.191 1.191 15 H -0.218 1.218 16 H -0.220 1.220 17 N -0.362 5.362 18 C 0.296 3.704 19 O -0.458 6.458 20 C -0.035 4.035 21 O -0.312 6.312 22 C 0.071 3.929 23 C -0.085 4.085 24 N -0.239 5.239 25 C -0.209 4.209 26 C -0.176 4.176 27 N -0.134 5.134 28 C -0.079 4.079 29 H 0.057 0.943 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.029 0.971 39 H 0.039 0.961 40 H 0.206 0.794 41 H 0.061 0.939 42 H 0.255 0.745 43 H 0.132 0.868 44 H 0.135 0.865 45 H 0.112 0.888 46 H 0.118 0.882 47 H 0.203 0.797 48 H 0.229 0.771 49 H 0.096 0.904 50 H 0.132 0.868 51 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -9.904 5.761 28.551 30.764 hybrid contribution 1.504 -0.131 -0.680 1.656 sum -8.400 5.630 27.870 29.648 Atomic orbital electron populations 1.22124 0.94589 1.02972 1.01967 1.20932 0.94294 0.96642 0.84038 0.91842 1.21836 0.94809 1.02098 0.96576 1.21426 0.95699 1.00061 0.97083 1.21605 0.93730 1.01029 0.98700 1.20866 0.94259 0.94203 0.88534 1.42642 1.04502 1.65375 1.26671 1.19708 0.85371 1.27608 1.05440 0.90774 1.25595 1.02195 1.01223 0.97831 1.69818 1.34622 1.41959 1.15593 0.85053 0.79925 0.77084 0.77569 1.19074 1.21759 1.21998 1.45895 1.66840 1.14827 1.08609 1.20822 0.77258 0.86941 0.85402 1.90723 1.51140 1.18385 1.85525 1.22430 1.04466 0.92133 0.84490 1.88041 1.87808 1.37109 1.18266 1.20702 1.01755 0.90680 0.79730 1.23067 0.85104 0.99521 1.00846 1.70135 1.28326 1.17370 1.08043 1.22779 0.96033 0.98847 1.03200 1.23365 0.98522 1.00721 0.95006 1.45569 1.13962 1.26931 1.26904 1.22396 0.80619 1.05614 0.99279 0.94309 0.90673 0.90773 0.89775 0.89380 0.91063 0.92902 0.91666 0.92671 0.97070 0.96119 0.79441 0.93931 0.74492 0.86847 0.86511 0.88848 0.88156 0.79684 0.77125 0.90425 0.86834 0.87865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 9.48 71.98 0.68 -1.93 16 2 C 0.15 2.58 2.57 44.99 0.12 2.70 16 3 H 0.06 1.49 7.58 -2.39 -0.02 1.47 16 4 C -0.12 -1.87 4.75 30.59 0.15 -1.72 16 5 C -0.10 -2.24 5.10 30.60 0.16 -2.08 16 6 C -0.11 -3.29 5.33 30.60 0.16 -3.13 16 7 C 0.15 5.80 6.26 86.38 0.54 6.34 16 8 N -0.75 -38.43 5.60 -343.47 -1.92 -40.36 16 9 C -0.25 -14.08 9.99 84.03 0.84 -13.24 16 10 H 0.07 4.03 7.83 -2.91 -0.02 4.00 16 11 C -0.08 -4.39 5.50 84.86 0.47 -3.93 16 12 N -0.97 -59.27 13.06 21.65 0.28 -58.99 16 13 Si 0.97 45.89 29.55 68.60 2.03 47.92 16 14 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 15 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 16 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 17 N -0.71 -10.71 4.53 -442.53 -2.00 -12.71 16 18 C 0.51 10.59 7.87 87.66 0.69 11.28 16 19 O -0.58 -18.82 16.16 16.02 0.26 -18.56 16 20 C 0.04 0.57 6.42 71.24 0.46 1.03 16 21 O -0.39 -8.22 9.86 -129.94 -1.28 -9.50 16 22 C 0.15 2.18 6.24 71.24 0.44 2.62 16 23 C 0.18 3.65 7.53 138.13 1.04 4.69 16 24 N -0.52 -13.16 11.25 -188.13 -2.12 -15.27 16 25 C -0.06 -1.19 11.87 83.52 0.99 -0.20 16 26 C -0.04 -0.61 11.58 83.08 0.96 0.35 16 27 N -0.45 -7.06 3.15 -537.61 -1.69 -8.75 16 28 C 0.06 0.45 10.97 127.77 1.40 1.85 16 29 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 34 H 0.07 1.38 7.75 -2.39 -0.02 1.36 16 35 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.37 20.22 7.67 -92.71 -0.71 19.51 16 41 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 42 H 0.42 3.55 8.60 -92.71 -0.80 2.75 16 43 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.10 0.71 7.06 -2.39 -0.02 0.69 16 47 H 0.19 2.69 8.06 -2.91 -0.02 2.67 16 48 H 0.21 1.30 8.06 -2.91 -0.02 1.28 16 49 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 50 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 51 H 0.10 0.41 7.04 -2.39 -0.02 0.39 16 Total: -1.00 -87.64 426.05 2.06 -85.58 By element: Atomic # 1 Polarization: 26.57 SS G_CDS: -0.59 Total: 25.98 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: 9.10 Total: 4.65 kcal Atomic # 7 Polarization: -128.62 SS G_CDS: -7.46 Total: -136.08 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -1.02 Total: -28.06 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -87.64 2.06 -85.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171437250.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.253 kcal (2) G-P(sol) polarization free energy of solvation -87.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds