Wall clock time and date at job start Tue Mar 31 2020 22:26:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.08997 * 109.47219 * 2 1
4 4 C 1.52996 * 109.47413 * 239.99428 * 2 1 3
5 5 C 1.52997 * 109.47131 * 174.99889 * 4 2 1
6 6 C 1.53006 * 109.47127 * 180.02562 * 5 4 2
7 7 C 1.52997 * 109.47127 * 180.02562 * 6 5 4
8 8 N 1.46496 * 109.46953 * 179.97438 * 7 6 5
9 9 C 1.36942 * 120.00106 * 179.97438 * 8 7 6
10 10 H 1.08004 * 119.99638 * 0.02562 * 9 8 7
11 11 C 1.38805 * 120.00269 * 179.97438 * 9 8 7
12 12 N 1.31615 * 120.00146 * 0.02562 * 11 9 8
13 13 Si 1.86799 * 120.00181 * 180.02562 * 11 9 8
14 14 H 1.48501 * 109.47144 * 0.02562 * 13 11 9
15 15 H 1.48500 * 109.47391 * 120.00172 * 13 11 9
16 16 H 1.48500 * 109.47521 * 240.00541 * 13 11 9
17 17 N 1.46502 * 109.46680 * 119.99620 * 2 1 3
18 18 C 1.34781 * 120.00059 * 274.99983 * 17 2 1
19 19 O 1.21277 * 119.99934 * 0.02562 * 18 17 2
20 20 C 1.50699 * 119.99755 * 180.02562 * 18 17 2
21 21 O 1.42908 * 109.46859 * 180.02562 * 20 18 17
22 22 C 1.42892 * 114.00036 * 180.02562 * 21 20 18
23 23 C 1.50699 * 109.47308 * 180.02562 * 22 21 20
24 24 N 1.30499 * 125.65382 * 90.02111 * 23 22 21
25 25 C 1.34127 * 109.25917 * 180.02562 * 24 23 22
26 26 C 1.34663 * 108.01954 * 0.02562 * 25 24 23
27 27 N 1.35048 * 125.64799 * 269.72146 * 23 22 21
28 28 C 1.46499 * 126.39893 * 359.97438 * 27 23 22
29 29 H 1.08992 * 109.47133 * 299.99981 * 1 2 3
30 30 H 1.08998 * 109.47095 * 60.00889 * 1 2 3
31 31 H 1.09010 * 109.47120 * 180.02562 * 1 2 3
32 32 H 1.09001 * 109.46993 * 54.99758 * 4 2 1
33 33 H 1.09004 * 109.47298 * 295.00173 * 4 2 1
34 34 H 1.09001 * 109.46832 * 60.00325 * 5 4 2
35 35 H 1.08993 * 109.47194 * 299.99846 * 5 4 2
36 36 H 1.09001 * 109.46801 * 300.00272 * 6 5 4
37 37 H 1.09001 * 109.46998 * 59.99868 * 6 5 4
38 38 H 1.08996 * 109.46952 * 300.00302 * 7 6 5
39 39 H 1.09001 * 109.46832 * 60.00321 * 7 6 5
40 40 H 0.96999 * 120.00356 * 0.02562 * 8 7 6
41 41 H 0.97000 * 120.00516 * 179.97438 * 12 11 9
42 42 H 0.96999 * 119.99931 * 95.00625 * 17 2 1
43 43 H 1.08993 * 109.47546 * 299.99667 * 20 18 17
44 44 H 1.09000 * 109.47454 * 60.00643 * 20 18 17
45 45 H 1.08999 * 109.47068 * 300.00053 * 22 21 20
46 46 H 1.09000 * 109.47177 * 59.99935 * 22 21 20
47 47 H 1.07998 * 125.98713 * 180.02562 * 25 24 23
48 48 H 1.07998 * 126.59040 * 180.02562 * 26 25 24
49 49 H 1.08996 * 109.47212 * 90.00236 * 28 27 23
50 50 H 1.09002 * 109.47166 * 210.00321 * 28 27 23
51 51 H 1.09001 * 109.47001 * 330.00602 * 28 27 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0401 -0.7213 -1.2491
5 6 3.5649 -0.6133 -1.3135
6 6 4.0749 -1.3342 -2.5631
7 6 5.5998 -1.2267 -2.6271
8 7 6.0881 -1.9174 -3.8232
9 6 7.4302 -1.9538 -4.0929
10 1 8.1287 -1.4736 -3.4235
11 6 7.8930 -2.6087 -5.2258
12 7 7.0419 -3.1943 -6.0413
13 14 9.7238 -2.6589 -5.5933
14 1 10.4623 -1.9317 -4.5298
15 1 10.1816 -4.0709 -5.6362
16 1 9.9832 -2.0144 -6.9058
17 7 2.0183 -0.6906 1.1963
18 6 2.1469 -0.0181 2.3572
19 8 1.8581 1.1585 2.4117
20 6 2.6497 -0.7284 3.5876
21 8 2.6971 0.1898 4.6817
22 6 3.1635 -0.3857 5.9036
23 6 3.1720 0.6658 6.9831
24 7 2.1808 0.9387 7.7869
25 6 2.5432 1.9290 8.6158
26 6 3.8067 2.2836 8.3138
27 7 4.2085 1.4780 7.2826
28 6 5.5169 1.4965 6.6239
29 1 -0.3633 0.5138 0.8899
30 1 -0.3633 0.5137 -0.8900
31 1 -0.3634 -1.0278 0.0005
32 1 1.6054 -0.2619 -2.1369
33 1 1.7517 -1.7716 -1.2054
34 1 3.9994 -1.0728 -0.4257
35 1 3.8532 0.4369 -1.3573
36 1 3.7865 -2.3844 -2.5197
37 1 3.6403 -0.8744 -3.4506
38 1 5.8885 -0.1765 -2.6701
39 1 6.0340 -1.6869 -1.7395
40 1 5.4608 -2.3484 -4.4245
41 1 7.3652 -3.6516 -6.8332
42 1 2.2490 -1.6317 1.1527
43 1 1.9775 -1.5506 3.8327
44 1 3.6491 -1.1201 3.3981
45 1 2.5025 -1.2014 6.1966
46 1 4.1738 -0.7697 5.7620
47 1 1.9293 2.3654 9.3897
48 1 4.3926 3.0518 8.7964
49 1 5.4926 2.1947 5.7872
50 1 6.2786 1.8110 7.3375
51 1 5.7531 0.4977 6.2568
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001171437250.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:26:31
Heat of formation + Delta-G solvation = -47.329293 kcal
Electronic energy + Delta-G solvation = -28087.600943 eV
Core-core repulsion = 24022.190561 eV
Total energy + Delta-G solvation = -4065.410381 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 1.05 seconds
Orbital eigenvalues (eV)
-43.06164 -40.96423 -38.84016 -37.86858 -36.77729 -34.97909 -34.77199 -33.11869
-32.14783 -31.60303 -28.94286 -28.77660 -27.92244 -26.63863 -25.89996 -23.75953
-22.39677 -22.20406 -21.96797 -21.53382 -20.99760 -19.12177 -18.56665 -18.04597
-17.77881 -17.33265 -17.06236 -16.68033 -16.37723 -16.11332 -15.81733 -15.64944
-15.37089 -15.28498 -14.93802 -14.67881 -14.51908 -14.17239 -14.13854 -14.02212
-13.81819 -13.50836 -13.31571 -13.06867 -13.02496 -12.89890 -12.85455 -12.78936
-12.45340 -12.25769 -12.10677 -11.88192 -11.80343 -11.47246 -11.38641 -11.04962
-10.94498 -10.85002 -10.83219 -10.61286 -10.07913 -9.47833 -9.00831 -7.96542
-5.25645 0.86857 1.47011 1.48006 1.58160 1.60629 1.72553 1.91401
2.17982 2.55337 3.02362 3.37142 3.54899 3.61901 3.76778 3.86396
3.92315 4.04334 4.07627 4.14924 4.17237 4.24576 4.28171 4.35489
4.37395 4.39984 4.44004 4.54527 4.61797 4.66114 4.67183 4.76943
4.79410 4.89135 4.94104 5.00047 5.03666 5.13619 5.27126 5.28089
5.32710 5.45922 5.46922 5.54755 5.59162 5.77434 5.91407 6.16675
6.26595 6.59589 7.06320 7.28004 7.32303 8.09462 8.32377 9.27249
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.011544 B = 0.001705 C = 0.001518
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2424.824082 B =16423.153737 C =18445.327128
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.158 4.158
2 C 0.145 3.855
3 H 0.063 0.937
4 C -0.115 4.115
5 C -0.105 4.105
6 C -0.113 4.113
7 C 0.148 3.852
8 N -0.749 5.749
9 C -0.249 4.249
10 H 0.074 0.926
11 C -0.076 4.076
12 N -0.969 5.969
13 Si 0.975 3.025
14 H -0.266 1.266
15 H -0.291 1.291
16 H -0.293 1.293
17 N -0.707 5.707
18 C 0.509 3.491
19 O -0.579 6.579
20 C 0.044 3.956
21 O -0.394 6.394
22 C 0.149 3.851
23 C 0.176 3.824
24 N -0.518 5.518
25 C -0.061 4.061
26 C -0.042 4.042
27 N -0.451 5.451
28 C 0.062 3.938
29 H 0.038 0.962
30 H 0.074 0.926
31 H 0.073 0.927
32 H 0.084 0.916
33 H 0.088 0.912
34 H 0.071 0.929
35 H 0.052 0.948
36 H 0.065 0.935
37 H 0.055 0.945
38 H 0.011 0.989
39 H 0.021 0.979
40 H 0.374 0.626
41 H 0.252 0.748
42 H 0.418 0.582
43 H 0.114 0.886
44 H 0.117 0.883
45 H 0.094 0.906
46 H 0.101 0.899
47 H 0.186 0.814
48 H 0.212 0.788
49 H 0.077 0.923
50 H 0.113 0.887
51 H 0.103 0.897
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.234 5.086 28.584 30.466
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.217 4.217
2 C 0.041 3.959
3 H 0.082 0.918
4 C -0.153 4.153
5 C -0.143 4.143
6 C -0.151 4.151
7 C 0.021 3.979
8 N -0.392 5.392
9 C -0.381 4.381
10 H 0.092 0.908
11 C -0.268 4.268
12 N -0.620 5.620
13 Si 0.804 3.196
14 H -0.191 1.191
15 H -0.218 1.218
16 H -0.220 1.220
17 N -0.362 5.362
18 C 0.296 3.704
19 O -0.458 6.458
20 C -0.035 4.035
21 O -0.312 6.312
22 C 0.071 3.929
23 C -0.085 4.085
24 N -0.239 5.239
25 C -0.209 4.209
26 C -0.176 4.176
27 N -0.134 5.134
28 C -0.079 4.079
29 H 0.057 0.943
30 H 0.093 0.907
31 H 0.092 0.908
32 H 0.102 0.898
33 H 0.106 0.894
34 H 0.089 0.911
35 H 0.071 0.929
36 H 0.083 0.917
37 H 0.073 0.927
38 H 0.029 0.971
39 H 0.039 0.961
40 H 0.206 0.794
41 H 0.061 0.939
42 H 0.255 0.745
43 H 0.132 0.868
44 H 0.135 0.865
45 H 0.112 0.888
46 H 0.118 0.882
47 H 0.203 0.797
48 H 0.229 0.771
49 H 0.096 0.904
50 H 0.132 0.868
51 H 0.121 0.879
Dipole moment (debyes) X Y Z Total
from point charges -9.904 5.761 28.551 30.764
hybrid contribution 1.504 -0.131 -0.680 1.656
sum -8.400 5.630 27.870 29.648
Atomic orbital electron populations
1.22124 0.94589 1.02972 1.01967 1.20932 0.94294 0.96642 0.84038
0.91842 1.21836 0.94809 1.02098 0.96576 1.21426 0.95699 1.00061
0.97083 1.21605 0.93730 1.01029 0.98700 1.20866 0.94259 0.94203
0.88534 1.42642 1.04502 1.65375 1.26671 1.19708 0.85371 1.27608
1.05440 0.90774 1.25595 1.02195 1.01223 0.97831 1.69818 1.34622
1.41959 1.15593 0.85053 0.79925 0.77084 0.77569 1.19074 1.21759
1.21998 1.45895 1.66840 1.14827 1.08609 1.20822 0.77258 0.86941
0.85402 1.90723 1.51140 1.18385 1.85525 1.22430 1.04466 0.92133
0.84490 1.88041 1.87808 1.37109 1.18266 1.20702 1.01755 0.90680
0.79730 1.23067 0.85104 0.99521 1.00846 1.70135 1.28326 1.17370
1.08043 1.22779 0.96033 0.98847 1.03200 1.23365 0.98522 1.00721
0.95006 1.45569 1.13962 1.26931 1.26904 1.22396 0.80619 1.05614
0.99279 0.94309 0.90673 0.90773 0.89775 0.89380 0.91063 0.92902
0.91666 0.92671 0.97070 0.96119 0.79441 0.93931 0.74492 0.86847
0.86511 0.88848 0.88156 0.79684 0.77125 0.90425 0.86834 0.87865
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.61 9.48 71.98 0.68 -1.93 16
2 C 0.15 2.58 2.57 44.99 0.12 2.70 16
3 H 0.06 1.49 7.58 -2.39 -0.02 1.47 16
4 C -0.12 -1.87 4.75 30.59 0.15 -1.72 16
5 C -0.10 -2.24 5.10 30.60 0.16 -2.08 16
6 C -0.11 -3.29 5.33 30.60 0.16 -3.13 16
7 C 0.15 5.80 6.26 86.38 0.54 6.34 16
8 N -0.75 -38.43 5.60 -343.47 -1.92 -40.36 16
9 C -0.25 -14.08 9.99 84.03 0.84 -13.24 16
10 H 0.07 4.03 7.83 -2.91 -0.02 4.00 16
11 C -0.08 -4.39 5.50 84.86 0.47 -3.93 16
12 N -0.97 -59.27 13.06 21.65 0.28 -58.99 16
13 Si 0.97 45.89 29.55 68.60 2.03 47.92 16
14 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16
15 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16
16 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16
17 N -0.71 -10.71 4.53 -442.53 -2.00 -12.71 16
18 C 0.51 10.59 7.87 87.66 0.69 11.28 16
19 O -0.58 -18.82 16.16 16.02 0.26 -18.56 16
20 C 0.04 0.57 6.42 71.24 0.46 1.03 16
21 O -0.39 -8.22 9.86 -129.94 -1.28 -9.50 16
22 C 0.15 2.18 6.24 71.24 0.44 2.62 16
23 C 0.18 3.65 7.53 138.13 1.04 4.69 16
24 N -0.52 -13.16 11.25 -188.13 -2.12 -15.27 16
25 C -0.06 -1.19 11.87 83.52 0.99 -0.20 16
26 C -0.04 -0.61 11.58 83.08 0.96 0.35 16
27 N -0.45 -7.06 3.15 -537.61 -1.69 -8.75 16
28 C 0.06 0.45 10.97 127.77 1.40 1.85 16
29 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16
30 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16
31 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16
32 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16
33 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16
34 H 0.07 1.38 7.75 -2.39 -0.02 1.36 16
35 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16
36 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16
37 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16
38 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16
39 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16
40 H 0.37 20.22 7.67 -92.71 -0.71 19.51 16
41 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16
42 H 0.42 3.55 8.60 -92.71 -0.80 2.75 16
43 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16
44 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16
45 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16
46 H 0.10 0.71 7.06 -2.39 -0.02 0.69 16
47 H 0.19 2.69 8.06 -2.91 -0.02 2.67 16
48 H 0.21 1.30 8.06 -2.91 -0.02 1.28 16
49 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16
50 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16
51 H 0.10 0.41 7.04 -2.39 -0.02 0.39 16
Total: -1.00 -87.64 426.05 2.06 -85.58
By element:
Atomic # 1 Polarization: 26.57 SS G_CDS: -0.59 Total: 25.98 kcal
Atomic # 6 Polarization: -4.44 SS G_CDS: 9.10 Total: 4.65 kcal
Atomic # 7 Polarization: -128.62 SS G_CDS: -7.46 Total: -136.08 kcal
Atomic # 8 Polarization: -27.04 SS G_CDS: -1.02 Total: -28.06 kcal
Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal
Total: -87.64 2.06 -85.58 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001171437250.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 38.253 kcal
(2) G-P(sol) polarization free energy of solvation -87.638 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.385 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.056 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.583 kcal
(6) G-S(sol) free energy of system = (1) + (5) -47.329 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.06 seconds