Wall clock time and date at job start Tue Mar 31 2020 22:26:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09001 * 109.47166 * 2 1
4 4 C 1.52992 * 109.47448 * 120.00767 * 2 1 3
5 5 C 1.52997 * 109.47482 * 184.99813 * 4 2 1
6 6 C 1.53000 * 109.47060 * 180.02562 * 5 4 2
7 7 C 1.53001 * 109.46886 * 180.02562 * 6 5 4
8 8 N 1.46500 * 109.47299 * 179.97438 * 7 6 5
9 9 C 1.36936 * 120.00253 * 179.97438 * 8 7 6
10 10 H 1.07998 * 119.99879 * 0.02562 * 9 8 7
11 11 C 1.38813 * 120.00059 * 179.97438 * 9 8 7
12 12 N 1.31620 * 119.99776 * 0.02562 * 11 9 8
13 13 Si 1.86795 * 120.00106 * 180.02562 * 11 9 8
14 14 H 1.48498 * 109.47283 * 60.00046 * 13 11 9
15 15 H 1.48496 * 109.47115 * 180.02562 * 13 11 9
16 16 H 1.48501 * 109.46983 * 300.00420 * 13 11 9
17 17 N 1.46502 * 109.46969 * 240.00729 * 2 1 3
18 18 C 1.34773 * 120.00306 * 84.99801 * 17 2 1
19 19 O 1.21292 * 119.99815 * 0.02562 * 18 17 2
20 20 C 1.50694 * 120.00409 * 179.97438 * 18 17 2
21 21 O 1.42902 * 109.47725 * 179.97438 * 20 18 17
22 22 C 1.42892 * 114.00427 * 179.97438 * 21 20 18
23 23 C 1.50703 * 109.47507 * 180.02562 * 22 21 20
24 24 N 1.30500 * 125.65044 * 269.70057 * 23 22 21
25 25 C 1.34131 * 109.25652 * 179.88817 * 24 23 22
26 26 C 1.34670 * 108.02148 * 0.36633 * 25 24 23
27 27 N 1.35040 * 125.64787 * 89.99650 * 23 22 21
28 28 C 1.46504 * 126.40149 * 359.94942 * 27 23 22
29 29 H 1.09004 * 109.47224 * 59.99257 * 1 2 3
30 30 H 1.09000 * 109.47346 * 179.97438 * 1 2 3
31 31 H 1.09007 * 109.46964 * 299.99762 * 1 2 3
32 32 H 1.09002 * 109.47103 * 64.99566 * 4 2 1
33 33 H 1.08998 * 109.46862 * 305.00378 * 4 2 1
34 34 H 1.09002 * 109.47153 * 59.99783 * 5 4 2
35 35 H 1.09001 * 109.46832 * 299.99974 * 5 4 2
36 36 H 1.09001 * 109.47194 * 299.99650 * 6 5 4
37 37 H 1.08992 * 109.47399 * 59.99823 * 6 5 4
38 38 H 1.09001 * 109.47109 * 299.99380 * 7 6 5
39 39 H 1.09002 * 109.47508 * 59.99571 * 7 6 5
40 40 H 0.97003 * 119.99983 * 359.97438 * 8 7 6
41 41 H 0.97005 * 119.99630 * 179.97438 * 12 11 9
42 42 H 0.97003 * 120.00235 * 265.00555 * 17 2 1
43 43 H 1.08997 * 109.47334 * 300.00478 * 20 18 17
44 44 H 1.09008 * 109.47061 * 60.00564 * 20 18 17
45 45 H 1.09004 * 109.47391 * 300.00054 * 22 21 20
46 46 H 1.08998 * 109.47411 * 60.00706 * 22 21 20
47 47 H 1.07998 * 125.98887 * 180.10921 * 25 24 23
48 48 H 1.07997 * 126.59607 * 179.74766 * 26 25 24
49 49 H 1.09005 * 109.46930 * 89.99507 * 28 27 23
50 50 H 1.09004 * 109.47114 * 209.99688 * 28 27 23
51 51 H 1.08994 * 109.46610 * 329.99970 * 28 27 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7214 1.2491
5 6 3.5648 -0.6135 1.3135
6 6 4.0749 -1.3354 2.5623
7 6 5.5996 -1.2270 2.6270
8 7 6.0881 -1.9177 3.8231
9 6 7.4301 -1.9541 4.0927
10 1 8.1285 -1.4733 3.4239
11 6 7.8928 -2.6082 5.2263
12 7 7.0416 -3.1938 6.0417
13 14 9.7234 -2.6573 5.5945
14 1 10.2353 -1.2715 5.7460
15 1 9.9553 -3.4113 6.8526
16 1 10.4352 -3.3285 4.4773
17 7 2.0183 -0.6905 -1.1963
18 6 2.1470 -0.0181 -2.3572
19 8 1.8589 1.1589 -2.4114
20 6 2.6498 -0.7281 -3.5876
21 8 2.6972 0.1900 -4.6816
22 6 3.1637 -0.3854 -5.9035
23 6 3.1733 0.6664 -6.9827
24 7 2.1844 0.9367 -7.7902
25 6 2.5465 1.9295 -8.6162
26 6 3.8106 2.2825 -8.3143
27 7 4.2087 1.4815 -7.2781
28 6 5.5140 1.5047 -6.6133
29 1 -0.3634 0.5140 -0.8899
30 1 -0.3634 -1.0276 -0.0005
31 1 -0.3633 0.5138 0.8901
32 1 1.7516 -1.7716 1.2053
33 1 1.6054 -0.2620 2.1368
34 1 3.8532 0.4368 1.3572
35 1 3.9994 -1.0729 0.4257
36 1 3.6403 -0.8764 3.4503
37 1 3.7865 -2.3856 2.5181
38 1 6.0346 -1.6858 1.7391
39 1 5.8877 -0.1766 2.6714
40 1 5.4607 -2.3493 4.4241
41 1 7.3650 -3.6512 6.8337
42 1 2.2489 -1.6317 -1.1529
43 1 3.6491 -1.1200 -3.3981
44 1 1.9775 -1.5504 -3.8328
45 1 4.1740 -0.7694 -5.7620
46 1 2.5027 -1.2011 -6.1967
47 1 1.9335 2.3662 -9.3907
48 1 4.3976 3.0497 -8.7972
49 1 6.1918 0.8173 -7.1197
50 1 5.9238 2.5140 -6.6525
51 1 5.3975 1.1998 -5.5734
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001171437251.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:26:35
Heat of formation + Delta-G solvation = -20.626911 kcal
Electronic energy + Delta-G solvation = -28089.061716 eV
Core-core repulsion = 24024.809237 eV
Total energy + Delta-G solvation = -4064.252479 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-42.44850 -40.15887 -38.16418 -36.82954 -35.25978 -34.40763 -33.30349 -31.91873
-31.24608 -30.35065 -28.28268 -27.46846 -27.43914 -26.03822 -24.22520 -22.33668
-21.78421 -21.23158 -20.80110 -20.65705 -20.37225 -17.93003 -17.39571 -17.15001
-16.98015 -16.70551 -16.33505 -15.73650 -15.17985 -15.02641 -14.92576 -14.72622
-14.29300 -14.00493 -13.91253 -13.56614 -13.47634 -13.34518 -13.16139 -13.11250
-13.01957 -12.96510 -12.52910 -12.35115 -12.21577 -11.78460 -11.47850 -11.28246
-11.01272 -10.81222 -10.72978 -10.45594 -10.35815 -10.32802 -10.26947 -10.03467
-10.00324 -9.96917 -9.67853 -9.26996 -8.86784 -8.84641 -6.91742 -5.76649
-3.05137 1.47492 2.29496 2.39175 2.48167 2.87430 3.43109 3.47216
3.48593 3.60322 4.14197 4.23540 4.32915 4.42974 4.53678 4.62015
4.64531 4.66836 4.70205 4.73846 4.85374 4.90523 4.95940 4.96448
5.07785 5.24558 5.36047 5.39226 5.44327 5.53598 5.59885 5.67786
5.76747 5.85088 5.88198 5.94900 6.09227 6.19160 6.28301 6.33100
6.36911 6.37150 6.44343 6.47577 6.72457 6.87594 6.91633 7.26150
7.68822 7.71294 8.00829 8.42723 9.53342 10.12669 10.47195 11.46313
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.011547 B = 0.001705 C = 0.001518
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2424.377771 B =16421.172373 C =18442.095452
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.143 3.857
3 H 0.089 0.911
4 C -0.127 4.127
5 C -0.114 4.114
6 C -0.126 4.126
7 C 0.152 3.848
8 N -0.735 5.735
9 C -0.241 4.241
10 H 0.069 0.931
11 C -0.015 4.015
12 N -0.934 5.934
13 Si 0.908 3.092
14 H -0.286 1.286
15 H -0.291 1.291
16 H -0.286 1.286
17 N -0.721 5.721
18 C 0.515 3.485
19 O -0.519 6.519
20 C 0.043 3.957
21 O -0.357 6.357
22 C 0.149 3.851
23 C 0.202 3.798
24 N -0.471 5.471
25 C -0.028 4.028
26 C -0.050 4.050
27 N -0.449 5.449
28 C 0.067 3.933
29 H 0.059 0.941
30 H 0.057 0.943
31 H 0.067 0.933
32 H 0.069 0.931
33 H 0.080 0.920
34 H 0.061 0.939
35 H 0.059 0.941
36 H 0.061 0.939
37 H 0.060 0.940
38 H 0.015 0.985
39 H 0.016 0.984
40 H 0.383 0.617
41 H 0.255 0.745
42 H 0.401 0.599
43 H 0.084 0.916
44 H 0.085 0.915
45 H 0.068 0.932
46 H 0.086 0.914
47 H 0.173 0.827
48 H 0.177 0.823
49 H 0.079 0.921
50 H 0.089 0.911
51 H 0.091 0.909
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.468 5.940 -27.559 30.073
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.222 4.222
2 C 0.039 3.961
3 H 0.107 0.893
4 C -0.165 4.165
5 C -0.152 4.152
6 C -0.164 4.164
7 C 0.025 3.975
8 N -0.379 5.379
9 C -0.372 4.372
10 H 0.087 0.913
11 C -0.211 4.211
12 N -0.583 5.583
13 Si 0.739 3.261
14 H -0.213 1.213
15 H -0.216 1.216
16 H -0.213 1.213
17 N -0.375 5.375
18 C 0.299 3.701
19 O -0.393 6.393
20 C -0.037 4.037
21 O -0.274 6.274
22 C 0.070 3.930
23 C -0.060 4.060
24 N -0.191 5.191
25 C -0.177 4.177
26 C -0.183 4.183
27 N -0.132 5.132
28 C -0.075 4.075
29 H 0.078 0.922
30 H 0.076 0.924
31 H 0.086 0.914
32 H 0.087 0.913
33 H 0.099 0.901
34 H 0.080 0.920
35 H 0.078 0.922
36 H 0.080 0.920
37 H 0.079 0.921
38 H 0.033 0.967
39 H 0.034 0.966
40 H 0.217 0.783
41 H 0.065 0.935
42 H 0.236 0.764
43 H 0.102 0.898
44 H 0.102 0.898
45 H 0.086 0.914
46 H 0.104 0.896
47 H 0.190 0.810
48 H 0.195 0.805
49 H 0.098 0.902
50 H 0.108 0.892
51 H 0.110 0.890
Dipole moment (debyes) X Y Z Total
from point charges -11.158 6.630 -27.489 30.399
hybrid contribution 1.901 -0.428 0.408 1.991
sum -9.257 6.202 -27.081 29.284
Atomic orbital electron populations
1.22184 0.95290 1.02141 1.02603 1.21053 0.93804 0.97720 0.83530
0.89304 1.21943 0.96858 1.00977 0.96695 1.21520 0.93965 1.01103
0.98604 1.21729 0.97235 1.00270 0.97141 1.20646 0.91019 0.95308
0.90540 1.42379 1.05313 1.64971 1.25208 1.19209 0.83940 1.28523
1.05509 0.91302 1.24748 0.97722 1.00948 0.97676 1.69654 1.32855
1.40683 1.15120 0.86253 0.85103 0.77474 0.77275 1.21280 1.21646
1.21306 1.45986 1.67910 1.14175 1.09430 1.20135 0.78285 0.87516
0.84129 1.90754 1.48353 1.15680 1.84544 1.22258 1.02126 0.92646
0.86702 1.88095 1.87194 1.35174 1.16928 1.20512 0.99877 0.91405
0.81173 1.22573 0.84794 0.98342 1.00263 1.70209 1.26609 1.15725
1.06601 1.22349 0.94502 0.98418 1.02469 1.22800 0.98836 1.01133
0.95550 1.45287 1.13389 1.27766 1.26787 1.22141 0.81878 1.04588
0.98911 0.92219 0.92416 0.91437 0.91259 0.90112 0.91987 0.92185
0.92031 0.92106 0.96695 0.96608 0.78340 0.93486 0.76442 0.89812
0.89756 0.91363 0.89567 0.81005 0.80545 0.90217 0.89196 0.89026
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.44 9.48 37.16 0.35 -1.09 16
2 C 0.14 1.35 2.57 -67.93 -0.17 1.18 16
3 H 0.09 1.03 7.58 -51.93 -0.39 0.64 16
4 C -0.13 -1.17 4.75 -26.74 -0.13 -1.30 16
5 C -0.11 -1.33 5.10 -26.73 -0.14 -1.47 16
6 C -0.13 -1.93 5.33 -26.73 -0.14 -2.08 16
7 C 0.15 3.07 6.26 -4.04 -0.03 3.05 16
8 N -0.73 -18.94 5.60 -59.91 -0.34 -19.28 16
9 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16
10 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16
11 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16
12 N -0.93 -28.41 13.06 55.49 0.72 -27.69 16
13 Si 0.91 22.46 29.55 -169.99 -5.02 17.43 16
14 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16
15 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16
16 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16
17 N -0.72 -6.09 4.53 -53.81 -0.24 -6.33 16
18 C 0.51 5.54 7.87 -10.99 -0.09 5.46 16
19 O -0.52 -8.17 16.16 -14.36 -0.23 -8.40 16
20 C 0.04 0.32 6.42 36.00 0.23 0.55 16
21 O -0.36 -3.83 9.86 -55.14 -0.54 -4.37 16
22 C 0.15 1.18 6.03 36.01 0.22 1.39 16
23 C 0.20 2.11 7.53 -155.42 -1.17 0.94 16
24 N -0.47 -5.81 11.25 -10.82 -0.12 -5.94 16
25 C -0.03 -0.27 11.87 -17.81 -0.21 -0.49 16
26 C -0.05 -0.39 11.58 -16.56 -0.19 -0.58 16
27 N -0.45 -3.76 3.15 -121.27 -0.38 -4.14 16
28 C 0.07 0.31 10.79 59.85 0.65 0.96 16
29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16
31 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16
32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16
33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16
34 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16
35 H 0.06 0.66 7.75 -51.93 -0.40 0.26 16
36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16
37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16
38 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16
39 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16
40 H 0.38 10.31 7.67 -40.82 -0.31 10.00 16
41 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16
42 H 0.40 2.32 8.60 -40.82 -0.35 1.97 16
43 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16
44 H 0.08 0.42 8.14 -51.92 -0.42 -0.01 16
45 H 0.07 0.33 7.70 -51.93 -0.40 -0.07 16
46 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16
47 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16
48 H 0.18 0.74 8.06 -52.49 -0.42 0.32 16
49 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16
50 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16
51 H 0.09 0.44 7.66 -51.93 -0.40 0.04 16
LS Contribution 426.91 15.07 6.43 6.43
Total: -1.00 -39.01 426.91 -9.78 -48.79
By element:
Atomic # 1 Polarization: 13.47 SS G_CDS: -8.99 Total: 4.48 kcal
Atomic # 6 Polarization: 0.07 SS G_CDS: -1.07 Total: -1.00 kcal
Atomic # 7 Polarization: -63.01 SS G_CDS: -0.36 Total: -63.37 kcal
Atomic # 8 Polarization: -11.99 SS G_CDS: -0.78 Total: -12.77 kcal
Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal
Total LS contribution 6.43 Total: 6.43 kcal
Total: -39.01 -9.78 -48.79 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001171437251.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 28.161 kcal
(2) G-P(sol) polarization free energy of solvation -39.005 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.844 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.783 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.788 kcal
(6) G-S(sol) free energy of system = (1) + (5) -20.627 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.98 seconds